K Number
K113731
Date Cleared
2012-09-10

(266 days)

Product Code
Regulation Number
862.2310
Reference & Predicate Devices
Predicate For
N/A
AI/MLSaMDIVD (In Vitro Diagnostic)TherapeuticDiagnosticis PCCP AuthorizedThirdpartyExpeditedreview
Intended Use

The eSensor® Respiratory Viral Panel (RVP) is a qualitative nucleic acid multiplex in vitro diagnostic test intended for use on the eSensor XT-8™ system for the simultaneous detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals exhibiting signs and symptoms of respiratory infection.

The following virus types and subtypes are identified using the eSensor RVP: Influenza A, Influenza A H1 Seasonal Subtype, Influenza A H3 Seasonal Subtype; Influenza A 2009 H1N1 subtype, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza Virus 3, Human Metapneumovirus, Human Rhinovirus, Adenovirus species B/E, and Adenovirus species C.

The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and epidemiological information.

Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other patient management decisions. Positive results do not rule out bacterial infection, or co-infection with other viruses. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence and radiography) and clinical presentation must be taken into consideration in the final diagnosis of respiratory viral infection.

Performance characteristics for Influenza A were established during the 2010/2011 influenza season when Influenza A 2009 H1N1 and H3N2 were the predominant Influenza A viruses in circulation. When other Influenza A viruses emerge, performance characteristics may vary.

If infection with a novel Influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.

For prescription use only.

Device Description

The eSensor RVP is a multiplex microarray-based genotyping test system. It is based on the principles of competitive DNA hybridization using a sandwich assay format, wherein a singlestranded target binds concurrently to sequence-specific solution-phase signal probe and solidphase electrode-bound capture probe. The test employs reverse transcription polymerase chain reaction amplification, exonuclease digestion and hybridization of target DNA/RNA. In the process, the double-stranded PCR amplicons are digested with exonuclease to generate singlestranded DNA suitable for hybridization. Hybridization occurs in the eSensor XT-8 Cartridge (described below) where the single-stranded target DNA is mixed with a hybridization solution containing labeled signal probes.

During hybridization, the single-stranded target DNA binds to a complementary, single-stranded capture probe immobilized on the working electrode surface. Single-stranded signal probes (labeled with electrochemically active ferrocenes) bind to the target adjacent to the capture probe. When inserted into the eSensor XT-8 instrument (described below), simultaneous hybridization of target to signal probes and capture probe is detected by alternating current voltammetry (ACV). Each pair of working electrodes on the array contains a different capture probe, and sequential analysis of each electrode allows detection of multiple viral targets.

The eSensor XT-8 cartridge device consists of a printed circuit board (PCB) with a multi-layer laminate and a plastic cover that forms a hybridization chamber. The cartridge is fitted with a pump and check valves that circulate the hybridization when inserted into the eSensor XT-8 instrument. The PCB chip consists of an array of 72 gold-plated working electrodes, a silver reference electrode, and two gold-plated auxiliary electrodes. Each working electrode has a connector contact pad on the opposite side of the chip for electrical connection to the eSensor XT-8 instrument. Each electrode is modified with a multi-component; self-assembled monolayer that includes oligonucleotide capture probes specific for each polymorphic site on the test panel and insulator molecules. The cartridge also contains an electrically erasable programmable readonly memory component (EEPROM) that stores information related to the cartridge (e.g., assay identifier, cartridge lot number, and expiration date).

The eSensor XT-8 instrument was previously cleared for IVD use by the FDA under K073720 and K090901.

The eSensor XT-8 is a clinical multiplex instrument that has a modular design consisting of a base module and one, two, or three cartridge-processing towers containing 8, 16, or 24 cartridge slots, respectively. The cartridge slots operate independently of each other. Any number of cartridges can be loaded at one time, and the remaining slots are available for use while the instrument is running.

The base module controls each processing tower, provides power, and stores and analyzes data. The instrument is designed to be operated solely with the touch screen interface. Entering patient accession numbers and reagent lot numbers can be performed by the bar code scanner or the touch screen.

Each processing tower consists of eight cartridge modules, each containing a cartridge connector, a precision-controlled heater, an air pump, and electronics. The air pumps drive the pump and valve system in the cartridge, eliminating fluid contact between the instrument and the cartridge. The pneumatic pumping enables recirculation of the hybridization solution allowing the target DNA and the signal probes to hybridize with the complementary capture probes on the electrodes. The pump in the cartridge is connected to a pneumatic source from the eSensor XT-8 instrument and provides unidirectional pumping of the hybridization mixture through the channel during hybridization. Using this process to circulate the hybridization solution minimizes the unstirred boundary laver at the electrode surface and continuously replenishes the volume above the electrode that has been depleted of complementary targets and signal probes.

The XT-8 instrument provides electrochemical detection of bound signal probes by ACV and subsequent data analysis and test report generating functions. All hybridization, ACV scanning and analysis parameters are defined by a scanning protocol loaded into the XT-8 Software, and then specified for use by the EEPROM on each cartridge.

Principle of eSensor Technology: eSensor technology uses a solid-phase electrochemical method for determining the presence of one or more of a defined panel of virus target sequences. Purified DNA/RNA is isolated from the patient specimen according to defined laboratory procedures and the extracted nucleic acid is reverse transcribed and/or amplified using virus specific primers with an RT-PCR enzyme mix. The amplified DNA is converted to single-stranded DNA via exonuclease digestion and is then combined with a signal buffer containing ferrocenelabeled signal probes that are specific for the different viral targets. The mixture of amplified sample and signal buffer is loaded onto a cartridge containing single-stranded oligonucleotide capture probes bound to gold-plated electrodes. The cartridge is inserted into the XT-8 instrument where the single-stranded targets hybridize to the complementary sequences of the capture probes and signal probes, as shown in Figure 1. The presence of each target is determined by voltammetry, which generates specific electrical signals from the ferrocene-labeled signal probe.

The eSensor RVP provides a qualitative result based upon the presence (Positive) or absence (Target Not Detected) of the viruses contained in the panel along with the internal MS2 control. Positive and negative results are determined based on the electrical signals generated being either above or below specified signal boundaries, respectively.

AI/ML Overview

I will provide a summary of the acceptance criteria and study information for the eSensor® Respiratory Viral Panel (RVP) based on the provided text.


eSensor® Respiratory Viral Panel (RVP) Acceptance Criteria and Study Details

1. Table of Acceptance Criteria and Reported Device Performance

The acceptance criteria for the eSensor RVP are embedded within the "Sensitivity" (Positive Percent Agreement - PPA) and "Specificity" (Negative Percent Agreement - NPA) results of the clinical performance study. The reported performance for each viral target is presented below, representing the device meeting these implicit criteria.

Virus (Analyte)Acceptance Criteria (Implicit)Reported Device Performance (Prospective Clinical Specimens) (95% CI)Reported Device Performance (Retrospective Clinical Specimens) (95% CI)
Influenza AHigh sensitivity and specificity for detection.PPA: 96.4% (91.7% - 98.8%), NPA: 94.8% (93.1% - 96.1%)N/A (H1 subtype specifically reported retrospectively)
Influenza A H1High sensitivity and specificity for detection.Sensitivity: N/A (0/0 cases), Specificity: 100.0% (99.6% - 100.0%) (for prospective samples not detecting H1)PPA: 96.7% (82.8% - 99.9%), NPA: 100.0% (98.7% - 100.0%)
Influenza A H3High sensitivity and specificity for detection.PPA: 100.0% (95.1% - 100.0%), NPA: 97.4% (96.2% - 98.3%)N/A
Influenza A 2009 H1N1High sensitivity and specificity for detection.PPA: 100.0% (92.7% - 100.0%), NPA: 98.5% (97.5% - 99.1%)N/A
Influenza BHigh sensitivity and specificity for detection.PPA: 92.8% (83.9% - 97.6%), NPA: 98.1% (97.1% - 98.9%)N/A
Parainfluenza Virus 1High sensitivity and specificity for detection.PPA: 100.0% (39.8% - 100.0%), NPA: 99.9% (99.5% - 100.0%)PPA: 100.0% (86.3% - 100.0%), NPA: 98.0% (95.6% - 99.3%)
Parainfluenza Virus 2High sensitivity and specificity for detection.PPA: 83.3% (35.9% - 99.6%), NPA: 99.8% (99.3% - 100.0%)PPA: 100.0% (86.8% - 100.0%), NPA: 96.6% (93.8% - 98.4%)
Parainfluenza Virus 3High sensitivity and specificity for detection.PPA: 94.1% (85.6% - 98.4%), NPA: 97.7% (96.6% - 98.6%)N/A
Human Metapneumovirus (hMPV)High positive and negative percent agreement when compared to validated comparator methods.PPA: 100.0% (93.5% - 100.0%), NPA: 99.8% (99.3% - 100.0%)N/A
Human Rhinovirus (HRV)High positive and negative percent agreement when compared to validated comparator methods.PPA: 89.2% (83.0% - 93.7%), NPA: 96.1% (94.6% - 97.3%)N/A
Respiratory Syncytial Virus AHigh sensitivity and specificity for detection.PPA: 100.0% (94.7% - 100.0%), NPA: 94.7% (93.1% - 96.0%)N/A
Respiratory Syncytial Virus BHigh sensitivity and specificity for detection.PPA: 100.0% (87.7% - 100.0%), NPA: 95.9% (94.5% - 97.0%)N/A
Adenovirus B/EHigh sensitivity and specificity for detection.PPA: 100.0% (75.3% - 100.0%), NPA: 99.1% (98.3% - 99.5%)PPA: 100.0% (86.3% - 100.0%), NPA: 98.3% (96.1% - 99.4%)
Adenovirus CHigh sensitivity and specificity for detection (with a note on potential cross-reactivity due to genetic similarity with other Adenovirus spp.)PPA: 100.0% (54.1% - 100.0%), NPA: 96.6% (95.3% - 97.5%) (Note: also mentions 16/35 RVP False Positives confirmed true)PPA: 100.0% (80.6% - 100.0%), NPA: 88.8% (84.8% - 91.9%) (Note: also mentions 16/35 RVP False Positives confirmed true)

2. Sample Sizes Used for the Test Set and Data Provenance

  • Prospective Clinical Study:
    • Total Samples Collected: 1182 nasopharyngeal (NP) swab specimens.
    • Evaluable Samples: 1037 specimens. (145 excluded due to not tested within 5 days of collection, operator/easyMAG errors, or not retested/sequenced).
    • Data Provenance: Prospective collection from January 2011 during the 2010/2011 influenza season. Collected at three North American clinical laboratories (Cleveland, Ohio; Providence, RI; and Albuquerque, NM).
  • Retrospective Clinical Study:
    • Total Samples Collected: 343 banked samples.
    • Evaluable Samples: 320 banked samples (for 5 viral targets: Influenza A H1, PIV1, PIV2, ADV B/E, ADV C).
    • Data Provenance: Frozen banked samples previously characterized as positive for certain analytes. Collected from various sites across the United States or from the Centers for Disease Control and Prevention (CDC).

3. Number of Experts Used to Establish the Ground Truth for the Test Set and Their Qualifications

The document does not explicitly state the number or specific qualifications (e.g., "radiologist with 10 years of experience") of experts involved in establishing the ground truth. However, it indicates the following methods were used:

  • For most viral targets (Flu A, Flu B, RSV, PIV1, PIV2, PIV3, Adenovirus): "established gold standard reference method of viral culture followed by DFA identification testing."
  • For subtyping (Influenza A H3, Influenza A 2009 H1N1, RSVA, RSVB, ADVB/E, ADVC): "independently developed qRT-PCR assay or qPCR assay followed by bidirectional sequencing."
  • For HRV and hMPV: "two independently developed and validated qRT-PCR assays followed by bidirectional sequencing."
  • For discrepancy resolution: Bidirectional sequencing was used to investigate discrepant results for many analytes (e.g., 35/47 RVP False Positive Influenza A samples were confirmed positive by sequencing, 22/25 RVP False Positive Influenza A H3 samples confirmed positive by sequencing, etc.). This implies expert interpretation of sequencing data.

While specific expert details are not provided, the ground truth relies on established laboratory "gold standard" methods and advanced molecular techniques (RT-PCR/qPCR and bidirectional sequencing), which are inherently performed and interpreted by trained laboratory professionals.

4. Adjudication Method (e.g., 2+1, 3+1, none) for the Test Set

The primary method for establishing ground truth was comparison to established reference methods (viral culture + DFA or multiple PCR/sequencing methods). For cases where the RVP result disagreed with the initial comparator method (often leading to "False Positive" or "False Negative" categories in the 2x2 tables), bidirectional sequencing was used as a tertiary method for "confirmation." This suggests a form of adjudication, where sequencing serves as a higher-level tie-breaker or confirmatory test rather than a simple 2+1 or 3+1 consensus among human readers.

5. If a Multi-Reader Multi-Case (MRMC) Comparative Effectiveness Study Was Done

No, a Multi-Reader Multi-Case (MRMC) comparative effectiveness study was not done. The study focuses on the standalone performance of the eSensor RVP diagnostic device compared to laboratory-based reference methods, not on how human readers improve with or without AI assistance. The device is a "qualitative nucleic acid multiplex in vitro diagnostic test," and its output is automated.

6. If a Standalone (i.e., algorithm only without human-in-the-loop performance) Was Done

Yes, a standalone performance study was conducted. The clinical performance data presented (sensitivity/PPA and specificity/NPA) are measures of the eSensor RVP as a standalone diagnostic device, comparing its automated qualitative results against reference laboratory methods. The device is described as having "Automated test interpretation and report generation."

7. The Type of Ground Truth Used

The ground truth for the test set was established using a combination of:

  • Laboratory Reference Methods:
    • Viral Culture followed by DFA identification: For Influenza A, Influenza B, RSV, Parainfluenza Viruses (PIV1, PIV2, PIV3), and Adenovirus.
    • Composite (Multi-Test) Reference Method: For Human Metapneumovirus and Human Rhinovirus, consisting of "two independently developed and validated qRT-PCR assays followed by bidirectional sequencing."
    • qRT-PCR/qPCR followed by Bidirectional Sequencing: Used for subtyping Influenza A and RSV, and for determining subtypes of Adenovirus. Also used as a confirmatory method for resolving discrepancies identified between the eSensor RVP and initial reference methods.
  • Publicly Available Databases: Bidirectional sequencing results were compared to sequences in the National Center for Biotechnology Information (NCBI) GenBank database.

8. The Sample Size for the Training Set

The document primarily describes validation studies and does not explicitly state the sample size of a distinct training set used for the development or initial optimization of the eSensor RVP itself. The clinical performance data are derived from independent test sets (prospective and retrospective clinical samples). Device development would involve internal validation and optimization, but specific training set sizes are not provided in this regulatory summary.

9. How the Ground Truth for the Training Set Was Established

Since a specific "training set" with established ground truth is not detailed, the methods described for establishing ground truth for the test sets (viral culture, DFA, qRT-PCR/qPCR, bidirectional sequencing, and comparison to NCBI GenBank for sequence matching) would logically be the same types of methods implied for any internal development or training efforts during the device's creation.

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K113731

.

510(k) Summary

510(k) Summary
Submitter Name:GenMark Diagnostics
Address:5964 La Place CourtCarlsbad, CA 92008
Contact:Joel CentenoVice President, Quality, Regulatory, and Clinical Affairs
Phone:1 (760) 448-4304
Fax:1 (760) 683-6821
E-mail:joel.centeno@genmarkdx.com
Date Prepared:December 16, 2011
Device Trade Name:eSensor® Respiratory Viral Panel (RVP)
Device Common Name:Respiratory Viral Panel Multiplex Nucleic Acid Assay System
Measurand:Viral RNA/DNA of the following targets:
TargetAbrv.TargetAbrv.
Influenza AFlu AHuman RhinovirusHRV
Influenza A H1Flu A H1Human MetapneumovirushMPV
Influenza A H3Flu A H3Adenovirus B/EADV B/E
Influenza A 2009 H1N12009 H1N1Adenovirus CADV C
Influenza BFlu BParainfluenza Virus 1PIV 1
Respiratory Syncytial Virus ARSV AParainfluenza Virus 2PIV 2
Respiratory Syncytial Virus BRSV BParainfluenza Virus 3PIV 3
Sample Type:Nasopharyngeal Swab (NPS)
Technology:Polymerase Chain Reaction (PCR)
Device Panel:OIVD Division of Immunology and Microbiology
Classification Name:Respiratory Viral Panel Multiplex Nucleic Acid Assay, 866.3980Instrumentation for clinical multiplex test systems, 862.2570
Classification Code:OCC: Respiratory viral panel multiplex nucleic acid assayOEM: Human Metapneumovirus (hMPV) RNA assay systemOEP: Influenza A virus subtype differentiation nucleic acid assayOOU: Parainfluenza Multiplex Nucleic Acid AssayNSU: Instrumentation for clinical multiplex test systems
Predicate Device(s):Luminex® xTag™ RVP, 510(k) Number K081483Classification Code: OCC, OEM, OEPRegulation No. 866.3980eSensor® Warfarin Sensitivity Test, 510(k) No. K073720Classification Code (applicable): NSU Instrumentation forClinical Multiplex Test Systems

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Intended Use:

The eSensor® Respiratory Viral Panel (RVP) is a qualitative nucleic acid multiplex in vitro diagnostic test intended for use on the eSensor XT-8™ system for the simultaneous detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals exhibiting signs and symptoms of respiratory infection.

The following virus types and subtypes are identified using the eSensor RVP: Influenza A, Influenza A H1 Seasonal Subtype, Influenza A H3 Seasonal Subtype; Influenza A 2009 H1N1 subtype, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza Virus 3, Human Metapneumovirus, Human Rhinovirus, Adenovirus species B/E, and Adenovirus species C.

The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and epidemiological information.

Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other patient management decisions. Positive results do not rule out bacterial infection, or co-infection with other viruses. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence and radiography) and clinical presentation must be taken into consideration in the final diagnosis of respiratory viral infection.

Performance characteristics for Influenza A were established during the 2010/2011 influenza season when Influenza A 2009 H1N1 and H3N2 were the predominant Influenza A viruses in circulation. When other Influenza A viruses emerge, performance characteristics may vary.

If infection with a novel Influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.

For prescription use only.

Indication for Use: Same as Intended Use

Device Description:

The eSensor RVP is a multiplex microarray-based genotyping test system. It is based on the principles of competitive DNA hybridization using a sandwich assay format, wherein a singlestranded target binds concurrently to sequence-specific solution-phase signal probe and solidphase electrode-bound capture probe. The test employs reverse transcription polymerase chain reaction amplification, exonuclease digestion and hybridization of target DNA/RNA. In the process, the double-stranded PCR amplicons are digested with exonuclease to generate singlestranded DNA suitable for hybridization. Hybridization occurs in the eSensor XT-8 Cartridge (described below) where the single-stranded target DNA is mixed with a hybridization solution containing labeled signal probes.

During hybridization, the single-stranded target DNA binds to a complementary, single-stranded capture probe immobilized on the working electrode surface. Single-stranded signal probes (labeled with electrochemically active ferrocenes) bind to the target adjacent to the capture probe. When inserted into the eSensor XT-8 instrument (described below), simultaneous hybridization of

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target to signal probes and capture probe is detected by alternating current voltammetry (ACV). Each pair of working electrodes on the array contains a different capture probe, and sequential analysis of each electrode allows detection of multiple viral targets.

BoxComponentPackaging & QuantityStorage
eSensor*Respiratory ViralPanel CartridgeseSensor® RVP Cartridges6 foil bags with 8 cartridgeseach in each cartridge pack10-25 °C
eSensor® Respiratory Viral PanelProduct Insert1 copyDry place(retain for reference)
eSensor*Respiratory ViralPanel AmplificationReagentsRVP Enzyme Mix2 vials with 40 µL each-15 to -30 °C
RVP PCR Mix2 vials with 1000 µL each(in a designated pre-PCR location)
MS2 Internal Control2 vials with 300 µL each
eSensor*Respiratory ViralPanel DetectionReagentsRVP Signal Buffer2 vials with 2200 µL each
Exonuclease2 vials with 145 µL each.-15 to -30 °C(in a designated post-PCR location)
Buffer-12 vials with 350 µL each
Buffer-22 vials with 700 µL each

Table 1: Reagents supplied with the kit:

The Assay Cartridge (eSensor XT-8 Cartridge)

The eSensor XT-8 cartridge device consists of a printed circuit board (PCB) with a multi-layer laminate and a plastic cover that forms a hybridization chamber. The cartridge is fitted with a pump and check valves that circulate the hybridization when inserted into the eSensor XT-8 instrument. The PCB chip consists of an array of 72 gold-plated working electrodes, a silver reference electrode, and two gold-plated auxiliary electrodes. Each working electrode has a connector contact pad on the opposite side of the chip for electrical connection to the eSensor XT-8 instrument. Each electrode is modified with a multi-component; self-assembled monolayer that includes oligonucleotide capture probes specific for each polymorphic site on the test panel and insulator molecules. The cartridge also contains an electrically erasable programmable readonly memory component (EEPROM) that stores information related to the cartridge (e.g., assay identifier, cartridge lot number, and expiration date).

The eSensor XT-8 Instrument

The eSensor XT-8 instrument was previously cleared for IVD use by the FDA under K073720 and K090901.

The eSensor XT-8 is a clinical multiplex instrument that has a modular design consisting of a base module and one, two, or three cartridge-processing towers containing 8, 16, or 24 cartridge slots, respectively. The cartridge slots operate independently of each other. Any number of cartridges can be loaded at one time, and the remaining slots are available for use while the instrument is running.

The base module controls each processing tower, provides power, and stores and analyzes data. The instrument is designed to be operated solely with the touch screen interface. Entering patient accession numbers and reagent lot numbers can be performed by the bar code scanner or the touch screen.

Each processing tower consists of eight cartridge modules, each containing a cartridge connector, a precision-controlled heater, an air pump, and electronics. The air pumps drive the pump and valve system in the cartridge, eliminating fluid contact between the instrument and the cartridge. The pneumatic pumping enables recirculation of the hybridization solution allowing the target DNA and the signal probes to hybridize with the complementary capture probes on the electrodes. The pump in the cartridge is connected to a pneumatic source from the eSensor XT-8 instrument and provides unidirectional pumping of the hybridization mixture through the channel

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during hybridization. Using this process to circulate the hybridization solution minimizes the unstirred boundary laver at the electrode surface and continuously replenishes the volume above the electrode that has been depleted of complementary targets and signal probes.

The XT-8 instrument provides electrochemical detection of bound signal probes by ACV and subsequent data analysis and test report generating functions. All hybridization, ACV scanning and analysis parameters are defined by a scanning protocol loaded into the XT-8 Software, and then specified for use by the EEPROM on each cartridge.

Principle of eSensor Technology: eSensor technology uses a solid-phase electrochemical method for determining the presence of one or more of a defined panel of virus target sequences. Purified DNA/RNA is isolated from the patient specimen according to defined laboratory procedures and the extracted nucleic acid is reverse transcribed and/or amplified using virus specific primers with an RT-PCR enzyme mix. The amplified DNA is converted to single-stranded DNA via exonuclease digestion and is then combined with a signal buffer containing ferrocenelabeled signal probes that are specific for the different viral targets. The mixture of amplified sample and signal buffer is loaded onto a cartridge containing single-stranded oligonucleotide capture probes bound to gold-plated electrodes. The cartridge is inserted into the XT-8 instrument where the single-stranded targets hybridize to the complementary sequences of the capture probes and signal probes, as shown in Figure 1. The presence of each target is determined by voltammetry, which generates specific electrical signals from the ferrocene-labeled signal probe.

The eSensor RVP provides a qualitative result based upon the presence (Positive) or absence (Target Not Detected) of the viruses contained in the panel along with the internal MS2 control. Positive and negative results are determined based on the electrical signals generated being either above or below specified signal boundaries, respectively.

Image /page/3/Picture/4 description: The image shows a schematic of a DNA biosensor. The biosensor consists of a gold electrode with a self-assembled monolayer on top. A capture probe is attached to the monolayer, which binds to the target DNA. A signal probe is then used to detect the presence of the target DNA. The 5' and 3' ends of the DNA strands are labeled.

Figure 1: Hybridization complex formed at the surface of each electrode. Different, target specific, capture probes are covalently attached to the gold electrodes in the eSensor microarray. The amplified viral target DNA hybridizes to the capture probe and to a complementary ferrocene label signal probe. The ferrocene label is detected at the electrode surface using voltammetry.

Substantial Equivalence Discussion: The eSensor Respiratory Viral Panel (RVP) uses the similar fundamental scientific technologies and has the same intended use as that of the predicate device, the Luminex® xTag® RVP and eSensor XT-8 Instrument. The eSensor XT-8 Instrument described in K078720 (eSensor Warfarin Sensitivity Test) is the identical instrument with a unique Assay Analysis Module (AAM) necessary to support the RVP IVD.

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ElementTable 2: Substantial Equivalence Predicate Comparison:
GenMark eSensor RVPLuminex xTag RVP
Subject DeviceK081483
Intended UseThe eSensor® Respiratory Viral Panel (RVP) is a qualitative nucleic acid multiplex in vitro diagnostic test intended for use on the eSensor XT-8TM system for the simultaneous detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals exhibiting signs and symptoms of respiratory infection.The xTAG RVP (Respiratory Viral Panel) is a qualitative nucleic acid multiplex test intended for the simultaneous detection and identification of multiple respiratory virus nucleic acids in nasopharyngeal swabs from individuals suspected of respiratory tract infections.
The following virus types and subtypes are identified using the eSensor RVP: Influenza A, Influenza A H1 Seasonal Subtype, Influenza A H3 Seasonal Subtype, Influenza A 2009 H1N1 subtype, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza Virus 3, Human Metapneumovirus, Human Rhinovirus, Adenovirus species B/E, and Adenovirus species C.The following virus types and subtypes are identified using RVP: Influenza A, Influenza A subtype H1, Influenza A subtype H3, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza 1, Parainfluenza 2, and Parainfluenza 3 virus, Human Metapneumovirus, Rhinovirus, and Adenovirus.
The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and epidemiological information.The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and laboratory findings. It is recommended that specimens found to be negative after examination using RVP be confirmed by cell culture. Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other management decisions.
Negative results do not preclude respiratory viral infection and should not be used as thePositive results do not rule out bacterial infection or co-infection with other organisms. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g., bacterial and viral culture, immunofluorescence, and radiography) and clinical presentation must be taken into consideration in order to obtain the final
ElementGenMark eSensor RVPLuminex xTag RVP
Subject DeviceK081483
sole basis for diagnosis, treatment or otherpatient management decisions. Positiveresults do not rule out bacterial infection, orco-infection with other viruses. The agentdetected may not be the definite cause ofdisease. The use of additional laboratorytesting (e.g. bacterial and viral culture,immunofluorescence and radiography) andclinical presentation must be taken intoconsideration in the final diagnosis ofrespiratory viral infection.diagnosis of respiratory infection.
Performance characteristics for Influenza Awere established during the 2010/2011influenza season when Influenza A 2009H1N1 and H3N2 were the predominantInfluenza A viruses in circulation. Whenother Influenza A viruses emerge,performance characteristics may vary.Due to seasonal prevalence, performancecharacteristics for Influenza A/H1 were establishedprimarily with retrospective specimens.
If infection with a novel Influenza A virus issuspected based on current clinical andepidemiological screening criteriarecommended by public health authorities,specimens should be collected withappropriate infection control precautions fornovel virulent influenza viruses and sent tostate or local health departments for testing.Viral culture should not be attempted inthese cases unless a BSL 3+ facility isavailable to receive and culture specimens.The RVP assay cannot adequately detectAdenovirus species C, or serotypes 7a and 41.The RVP primers for detection of rhinovirus cross-react with enterovirus. A rhinovirus reactive resultshould be confirmed by an alternate method (e.g.cell culture).
For prescription use only.Performance characteristics for Influenza A Viruswere established when Influenza A/H3 and A/H1were the predominant Influenza A viruses incirculation. When other Influenza A viruses areemerging, performance characteristics may vary. Ifinfections with a novel Influenza A virus issuspected based on current clinical andepidemiological screening criteria recommended bypublic health authorities, specimens should becollected with appropriate infection controlprecautions for novel virulent Influenza viruses andsent to a state or local health department fortesting. Viral culture should not be attempted inthese cases unless a BSL 3+ facility is available toreceive and culture specimens.
6
ElementGenMark eSensor RVPLuminex xTag RVP
Subject DeviceK081483
Organisms DetectedInfluenza A, Influenza A H1 SeasonalSubtype, Influenza A H3 Seasonal Subtype,Influenza A 2009 H1N1 strain, Influenza B,Respiratory Syncytial Virus subtype A,Respiratory Syncytial Virus subtype B,Parainfluenza 1, Parainfluenza 2,Parainfluenza 3, Human Metapneumovirus,Human Rhinovirus, Adenovirus B/E andAdenovirus CInfluenza A, Influenza A subtype H1, Influenza Asubtype H3, Influenza B, Respiratory SyncytialVirus subtype A, Respiratory Syncytial Virussubtype B, Parainfluenza 1, Parainfluenza 2, andParainfluenza 3 virus, Human Metapneumovirus,Rhinovirus, and Adenovirus
Specimen typeSameNasopharyngeal swabs (NPS)
Sample preparationSameUp front sample processing is required to extractnucleic acid
Assay technologySamePCR-based system for detecting viral nucleic acidsin clinical specimens targeting unique regions ofvirus RNA/DNA
DetectiontechnologySolid phase electrochemicalSpectrofluorometry
Instrument1. Same2. eSensor XT-81. EasyMag® extraction system2. Luminex® 100/200™ instrument
SoftwareApplication software and embeddedfirmware (controls hardware functions) onXT-8 in addition to Assay Analysis Module(AAM) for RVP-IVDIS or XPONENT software; xTAG Data AnalysisSoftware RVP (US)
Time to resultsApproximately 6 hoursApproximately 8 hours
ResultsSameQualitative
Test interpretationAutomated test interpretation and reportgeneration. User can access the raw signalsgenerated by the assay.Semi-automated test interpretation. User mustreview all "no call" results to determine cause andretesting strategy.
ControlsSameInternal control added to each sample. Externalcontrol processed with each batch of samples.

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NON-CLINICAL PERFORMANCE DATA

Limit of Detection

Limit of Detection (LoD)

The Limit of Detection (LoD) was identified and verified for each viral target of the eSensor RVP using samples prepared from regrown and re-titered viral reference strains as detailed in Table 3. Initial estimations involved serially diluting each viral strain in M5 media. The dilutions prepared from each target were extracted in triplicate and the assay was performed once for each extract. Verification of the LoD was performed by meeting 95% detection or in at least 19 of the 20 extraction replicates on the selected dilution of each culture. Once the LoD was verified for each viral target in M5. verification of the LoD was also performed with the M4 media. Each viral target was diluted in M4 media down to the LoD concentration. The LoD dilution of each culture was extracted 20 times and the eSensor RVP assay was performed on each extract. The final results summary with the verified LoD concentration in TCID55/mL for both M5 and M4 media is shown in Table 3.

Viral TargetStrainStartingTCID50/mLLoD SpikedConc.(TCID50/mL)%Positive
Flu AH1N1Brisbane/59/074.17 x 1054.17 x 10-1100%
Flu A H1H1N1Brisbane/59/074.17 x 1054.17 x 10-197.5%
Flu AH3N21.58 x 1081.58 x 103100%
Flu A H3H3N21.58 x 1081.58 x 103100%
Flu A 2009H1N1NY/20091.05 x 1061.05 x 10-195%
Flu BFlorida/02/063.16 x 1063.16 x 10-1100%
hMPVB24.17 x 1054.17 x 100100%
HRV31.58 x 1041.58 x 10-397.5%
PIV1C352.81 x 1042.81 x 10-2100%
PIV2Greer2.81 x 1062.81 x 100100%
PIV3C 2432.81 x 1072.81 x 101100%
RSV AA22.81 x 1052.81 x 10097.5%
RSV B93201.58 x 1051.58 x 100100%
ADV B/EType 41.58 x 1061.58 x 101100%
ADV CType 18.89 x 1078.89 x 101100%

Table 3: LoD Results Summary

Analytical Reactivity (Inclusivity)

Analytical Inclusivity Testing

The performance of the eSensor RVP with multiple viral target strains representing temporal and geographic diversity for each claimed viral target was evaluated. Each viral target strain was diluted in M5 transport media to a titer of 3X LoD for the corresponding viral target and extracted in triplicate using the bioMerieux NucliSENS easyMAG System. Following extraction, each

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replicate was tested once using the eSensor RVP. In the case that a viral target strain is not detected at 3X LoD, 1000-fold serial dilutions were made from the viral stock and then each dilution was extracted in triplicate and tested using the eSensor RVP.

In cases where unexpected False Negative results were obtained, in silico analysis was performed. Table 4 shows the results.

TargetStrainConcentrationDetected(TCID50/ml)LoD MultipleDetected
Flu A H1A/NewCaledonia/20/19994.210x
A/Brisbane/59/071.263x
FM/1/47H11.263x
A/Denver/1/571.263x
A/SolomonIslands/3/20061.263x
A/Taiwan/42/061.263x
A/NWS/331260Flu A- 3x;H1- 3000x*
A/PR/8/341.26Flu A- 3x;H1- not detected*
A/Mal/302/546372Flu A- 3xH1- 15172x*
A/Fort Monmouth/1/1947(H1N1)5.5Flu A- 3xH1-13x*
A/Aichi/2/68 H3N247433x
Flu A H3A/Brisbane/10/0747433x
A/Victoria/3/7547433x
A/Port Chalmers/1/7347433x
A/Wisconsin/67/0547433x
A/Hong Kong/8/6847433x
A/Perth/16/200947433x
Alice (vaccine)A/England/42/7247433x
MRC-2 RecombinantStrain47433x
A/Nanchang/933/9547433x
Flu A 2009H1N1A/NY/02/20090.33x
A/New Jersey/8/760.33x
A/California/7/20090.33x
Table 4: Analytical Reactivity (Inclusivity) Results
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TargetStrainConcentrationDetected(TCID50/ml)LoD MultipleDetected
A/Swine NY/01/20090.33x
A/Swine NY/03/20090.33x
A/Mexico/4108/090.33x
A/Virginia/ATCC1/20090.33x
A/Virginia/ATCC2/20090.6Flu A- 3x2009 H1N1- 6x**
A/Virginia/ATCC3/20092.7Flu A- 3x2009 H1N1-27x**
A/Iowa/15/30100Flu A- 3x;2009 H1N1-1000x**
B/Florida/02/06(Yamagata)13x
B/Malaysia/2506/0413x
Flu B(Victorialineage exceptwhere noted)B/Lee/4013x
B/Allen/4513x
B/GL/1739/5413x
B/Taiwan/2/6213x
B/Hong Kong/5/7213x
B/Maryland/1/5913x
RSV AA28.43x
Long8.43x
93204.83x
RSV BWV/14617/854.83x
Wash/18537/624.83x
PIV1C350.0843x
Type 10.0843x
PIV2Greer8.43x
Type 28.43x
PIV3C-243843x
Type 3843x
hMPVIA3-2002 G, A112.63x
IA14-2003 G, A212.63x
Peru2-2002 G, B112.63x
TargetStrainConcentrationDetected(TCID50/ml)LoD MultipleDetected
1A0.9450x#
A20.9569x#
A70.0053x
A160.0053x
HRV A18Detected##N/A
A340.0053x
A570.0053x
A770.0053x
277G0.2100x#
B30.180x
B140.0214x
B170.4253x
HRV BB420.0053x
FO2-25470.289x#
B830.2127x
84Detected##N/A
HRV CC$Detected##N/A
Type 30.33x
Type 7A0.33x
ADV BType 11 (lot 306523)0.33x
De Wit Type 140.33x
Ch.79 Type 160.33x
Type 21 (lot 307610)0.33x
Compton Type 340.33x
Holden Type 350.33x
Wan Type 500.33x
Type 12673x
Type 25336x
ADV CType 55336x
Type 65336x
ADV EType 4473x

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in silico analysis revealed little homology between the strain sequence and the H1
primer sequences. The degree of mis-match to the H1 subtype primer sequences
resulted subtyping result.

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  • ** In silico analysis revealed little homology between the strain sequence and the 2009 H1N1 primer sequences. The degree of mis-match to the 2009 H1N1 subtype primer sequences resulted in decreased reactivity to these influenza strains for the 2009 H1N1 subtyping result.
    • HRV strain 3, used for LoD determination, had a TCIDs /ml of 0.0016. HRV strains 1A, FO2-2547, 277G were detected at a higher LoD multiple to the reference strain, respectively with their corresponding TCIDsoml values of 0.9, 0.2, and 0.2. In silico analysis revealed mis-matches between the capture probe sequence and the HRV strains (2, 3 and 1 mis-match(es) respectively).

** No concentration available since it was an extracted RNA sample. § Only one test done for HRV C due to limited sample availability

Supplemental Analytical Inclusivity Testing of Other Influenza Subtypes

Additional analytical inclusivity testing was carried out with either live isolates or purified genomic RNA of Influenza A strains.

SubtypeHostStrainTesting Conc.RVP Result
Flu A H1N2HumanA/NWS/34 (HA) x A/Rockefeller Institute/5/57 (NA),(H1N2), Reassortant NWS-F, RNA0.74 ngFlu A H1
Flu A H2N2AvianA/Japan/305/57, RNA1.625 ngFlu A
Flu A H5N3A/Korea/426/68 (HA, NA) x A/Puerto Rico/8/34, RNA3.12 ngFlu A
Flu A H5N3AvianA/duck/Singapore/645/97, Wild Type1.26 TCID50/mlFlu A
Flu A H10N7A/chicken/Germany/N/491.26 TCID50/mlFlu A

Table 5: Additional Analytical Reactivity (Inclusivity) Results

Simulated Reactivity Information for Influenza Strains of Human, Swine, and Avian Origin

For any strains that were not available for testing with the eSensor RVP, such as Flu A H5 and Flu A H7 strains in silico analysis was performed. The eSensor RVP primers for Flu A, Flu A H1, Flu A 2009 H1N1 and Flu A H3 were aligned to the GenBank® sequences of the reactivity strains. Exclusivity was predicted based on the number and location of mismatches between assay primers and available strain sequences.

Simulated reactivity of the eSensor RVP with influenza strains was generated using a bioinformatics approach. Assay primer sequences, signal probes and capture probes were aligned with GenBank sequences corresponding to the appropriate gene targets and reactivity were predicated based on the number and location of mismatches in the targeted region shown in Table 6.

Table 6: Supplemental Reactivity of eSensor RVP Influenza A with
Human. Swine, and Avian Influenza Strains
SubtypeHostStrainGenBankIDSimulatedRVPReactivityResult
H2N2HumanA/Albany/20/1957(H2N2)CY022014Flu A
A/chicken/New York/13828-3/1995(H2N2)CY014822Flu A
AvianA/Japan/305/1957(H2N2)CY014977Flu A
A/Korea/426/1968(H2N2)CY031596Flu A
H4N6AvianA/blue-winged teal/Minnesota/Sg-00043/2007(H4N6)CY063978Flu A
H5N1A/peregrine falcon/Aomori/7/2011AB629716Flu A
SubtypeHostStrainGenBankIDSimulatedRVPReactivityResult
H5N1AvianA/chicken/West Bengal/239022/2010CY061305Flu A
A/chicken/West Bengal/193936/2009GU272009Flu A
A/chicken/Hunan/1/2009HM172150Flu A
A/chicken/Hunan/8/2008GU182162Flu A
A/chicken/West Bengal/106181/2008GU083632Flu A
A/chicken/Primorsky/85/2008FJ654298Flu A
A/chicken/West Bengal/82613/2008GU083648Flu A
A/duck/France/080036/2008CY046185Flu A
A/duck/Vietnam/G12/2008AB593450Flu A
A/chicken/Thailand/PC-340/2008EU620664Flu A
A/great egret/Hong Kong/807/2008CY036240Flu A
A/rook/Rostov-on-Don/26/2007(H5N1)EU814504Flu A
A/turkey/VA/505477-18/2007(H5N1)GU186510Flu A
A/chicken/Bangladesh/1151-10/2010(H5N1)HQ156766Flu A
A/Bangladesh/3233/2011CY088772Flu A
HumanA/Cambodia/R0405050/2007(H5N1)HQ200572Flu A
A/Cambodia/S1211394/2008HQ200597Flu A
A/Hong Kong/486/97(H5N1)AF255368Flu A
SwineA/swine/East Java/UT6010/2007(H5N1)HM440124Flu A
H5N2A/duck/Pennsylvania/10218/1984(H5N2)AB286120Flu A
A/American black duck/Illinois/08OS2688/2008CY079453Flu A
A/American green-winged teal/California/HKWF609/2007CY033447Flu A
A/Canada goose/New York/475813-2/2007GQ923358Flu A
AvianA/blue-winged teal/Saskatchewan/22542/2007CY047705Flu A
A/chicken/Taiwan/A703-1/2008AB507267Flu A
A/duck/France/080032/2008CY046177Flu A
A/duck/New York/481172/2007GQ117202Flu A
A/gadwall/Altai/1202/2007CY049759Flu A
H5N3A/mallard/Louisiana/476670-4/2007GQ923390Flu A
A/waterfowl/Colorado/476466-2/2007GQ923374Flu A
AvianA/duck/Singapore/F119/3/1997(H5N3)GU052803Flu A
H6N1AvianA/duck/PA/486/1969(H6N1)EU743287Flu A
H6N2H7N2A/mallard/Czech Republic/15902-17K/2009(H6N2)HQ244433Flu A
AvianA/chicken/Hebei/1/2002AY724263Flu A
A/chicken/PA/149092-1/02AY241609Flu A
A/chicken/NJ/294508-12/2004EU743254Flu A
A/chicken/New York/23165-6/2005CY031077Flu A
SubtypeHostStrainGenBank IDSimulated RVP Reactivity Result
A/muscovy duck/New York/87493-3/2005CY034791Flu A
A/mallard/Netherlands/29/2006CY043833Flu A
A/northern shoveler/California/JN1447/2007CY076873Flu A
H7N2HumanA/New York/107/2003(H7N2)EU587373Flu A
H7N3A/Canada/rv504/2004(H7N3)CY015007Flu A
A/American green-winged teal/Mississippi/09OS046/2009CY079309Flu A
AvianA/chicken/Germany/R28/03AJ619676Flu A
A/chicken/Netherlands/1/03AY340091Flu A
H7N7A/mallard/California/HKWF1971/2007CY033383Flu A
A/mallard/Korea/GH171/2007FJ959087Flu A
A/mute swan/Hungary/5973/2007GQ240816Flu A
A/northern shoveler/Mississippi/ 09OS643/2009CY079413Flu A
HumanA/Netherlands/219/03(H7N7)AY340089
H9N2A/Hong Kong/1073/99(H9N2)AJ278647
AvianA/turkey/Wisconsin/1/1966(H9N2)CY014664Flu A
H11N9A/duck/Memphis/546/1974(H11N9)GQ257441Flu A
SwineA/swine/Wisconsin/1/1971 (H1N1)CY022414Flu A
H1N1A/swine/Wisconsin/1/1971 (H1N1)CY022417Flu A H1
A/California/UR06-0393/2007(H1N1)CY026540Flu A
A/California/UR06-0393/2007(H1N1)CY026539Flu A H1
HumanA/New York/297/2003(H1N2)CY002665Flu A
H1N2A/New York/297/2003(H1N2)CY002664Flu A H1
H1N1 (2009)A/Aalborg/INS133/2009(H1N1)CY063607Flu A
A/Aalborg/INS133/2009(H1N1)CY0636062009 H1N1
SwineA/swine/Hong Kong/NS857/2001 (H1N2)GQ229350Flu A
H1N2A/swine/Hong Kong/NS857/2001 (H1N2)GQ229348Flu A H1
A/swine/Sweden/1021/2009(H1N2)GQ495135Flu A
A/swine/Sweden/1021/2009(H1N2)GQ495132Flu A H1
AvianA/blue-winged teal/ALB/452/1983(H3N1)CY004635Flu A
H3N1A/blue-winged teal/ALB/452/1983(H3N1)CY005940Flu A H3
H3N2A/swine/NY/A01104005/2011(H3N2)*N/A*Flu A
SwineA/swine/NY/A01104005/2011(H3N2)*JN940422Flu A H3
A/Maine/06/2011(H3N2)JN866181Flu A
A/Maine/06/2011(H3N2)JN866186Flu A H3
A/Indiana/08/2011(H3N2)JN655558Flu A
A/Indiana/08/2011(H3N2)JN638733Flu A H3
CY044581Flu A
SubtypeHostStrainGenBank IDSimulated RVP Reactivity Result
A/American black duck/North Carolina/675-075/2004(H3N2)GU051136Flu A
GU051135Flu A H3
H3N5A/mallard/Netherlands/2/1999(H3N5)CY060264Flu A
CY060261Flu A H3
H3N6AvianA/American black duck/New Brunswick/25182/2007(H3N6)CY047697Flu A
CY047696Flu A H3
H3N7A/northern shoveler/California/HKWF1367/2007(H3N7)CY033375Flu A
CY033372Flu A H3
H3N8A/American black duck/Washington/699/1978(H3N8)GU052300Flu A
GU052299Flu A H3

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and the country of the country of the country

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  • Influenza A H3N2v (swine-origin). No sequence available but literature from CDC states that strains the conserved Matrix Protein (14) sequence from 2009 H1N1. Therefore Flu A should also be able to be detected.

Reproducibility

Multisite Reproducibility

Multisite reproducibility of the eSensor RVP was performed to evaluate the major sources of variability, such as lot-to-lot, extraction, site/instrument-to-site/instrument, day-to-day and operator/run-to-operator/run. Reproducibility testing occurred at three sites, utilizing a panel of samples containing viral material from culture derived isolates in media, simulating NPS specimen. Each of the selected panel targets was prepared at concentrations representing the following three viral load levels: Moderate Positive (100% positive, 3x LoD), Low Positive (95% positive, 1x LoD), and Negative (100% negative). Each simulated sample was divided into aliquots, blinded, and stored frozen (-70 °C) prior to testing. Each site received three lots of RVP Cartridges/Reagents, a set of samples for two operators and one XT-8 instrument. All samples were independently extracted using the bioMérieux easyMAG extraction system. Every analyte at each concentration was tested a total of 108 times (two operators at three sites, each testing three replicates on six testing days). Each lot of RVP Cartridges/Reagents was used in 36 tests per analyte/concentration. Summary results for each tested analyte are summarized below.

Flu AConcentrationSite# Positive# Negative% Agreementwith ExpectedResults95% CIMean(nA)Std Dev% CV
MOD POS(3x LoD)1.3 TCID50/mlSite 136/360/36100.0%90.3%-100%243.023.69.7
Site 236/360/36100.0%90.3%-100%246.429.712.0
Site 336/360/36100.0%90.3%-100%235.032.613.9
All Sites108/1080/108100.0%96.6%-100%241.529.012.0
LOW POS(1x LoD)0.4 TCID50/mlSite 136/360/36100.0%90.3%-100%248.328.611.5
Site 236/360/36100.0%90.3%-100%244.726.410.8
Site 336/360/36100.0%90.3%-100%232.823.210.0
All Sites108/1080/108100.0%96.6%-100%242.026.711.1

Table 7: Summary of Influenza A Calls (H3N2)

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Flu AConcentrationSite# Positive# Negative% Agreementwith ExpectedResults95% CIMean(nA)Std Dev% CV
NegativeSite 13/288285/28899.0%97.0%-99.8%1.22.4N/A
Site 21/288287/28899.7%98.1%-100%1.02.2N/A
Site 32/288286/28899.3%97.5%-99.9%1.00.9N/A
All Sites6/864858/86499.3%98.5%-99.7%1.11.9N/A

Table 8: Summary of Influenza A H3 Calls

Flu A H3ConcentrationSite# Positive# Negative% Agreementwith ExpectedResults95% CIMean(nA)Std Dev% CV
MOD POS(3x LoD)$4.7 \times 10^3$TCID50/mlSite 136/360/36100.0%90.3%-100%86.523.927.7
Site 236/360/36100.0%90.3%-100%77.426.734.5
Site 336/360/36100.0%90.3%-100%86.030.535.4
All Sites108/1080/108100.0%96.6%-100%83.327.332.7
LOW POS(1x LoD),$1.6 \times 10^3$TCID50/mlSite 136/360/36100.0%90.3%-100%81.526.132.0
Site 236/360/36100.0%90.3%-100%68.229.643.4
Site 336/360/36100.0%90.3%-100%84.921.325.1
All Sites108/1080/108100.0%96.6%-100%78.226.634.1
NegativeSite 10/288288/288100.0%98.7%-100%0.40.3N/A
Site 20/288288/288100.0%98.7%-100%0.30.3N/A
Site 31/288287/28899.7%98.1%-100%0.40.4N/A
All Sites1/864863/86499.9%99.4%-100%0.40.4N/A

Table 9: Summary of Adenovirus B/E Calls

ADV BConcentrationSite# Positive# Negative% Agreementwith ExpectedResults95% CIMean(nA)Std Dev% CV
Site 136/360/36100.0%90.3%-100%109.110.910.0
MOD POS(3x LoD)47.4 TCID50/mlSite 236/360/36100.0%90.3%-100%102.611.511.2
Site 336/360/36100.0%90.3%-100%102.214.514.1
All Sites108/1080/108100.0%96.6%-100%104.712.712.1
Site 136/360/36100.0%90.3%-100%92.711.412.3
LOW POS(1x LoD)15.8 TCID50/mlSite 236/360/36100.0%90.3%-100%89.910.912.1
Site 336/360/36100.0%90.3%-100%84.516.920.0
All Sites108/1080/108100.0%96.6%-100%89.113.715.3
Site 11/288287/28899.7%98.1%-100%1.66.0N/A
NegativeSite 20/288288/288100.0%98.7%-100%1.20.4N/A
Site 30/288288/288100.0%98.7%-100%1.20.4N/A
All Sites1/864863/86499.9%99.4%-100%1.33.5N/A

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hMPVConcentrationSite# Positive# Negative% Agreementwith ExpectedResults95% CIMean(nA)Std Dev% CV
MOD POS(3x LoD)13 TCID50/mlSite 136/360/36100.0%90.3%-100%91.226.128.6
MOD POS(3x LoD)13 TCID50/mlSite 236/360/36100.0%90.3%-100%92.537.140.1
MOD POS(3x LoD)13 TCID50/mlSite 336/360/36100.0%90.3%-100%100.422.722.6
MOD POS(3x LoD)13 TCID50/mlAll Sites108/1080/108100.0%96.6%-100%94.729.330.9
LOW POS(1x LoD)4 TCID50/mlSite 136/360/36100.0%90.3%-100%56.430.053.2
LOW POS(1x LoD)4 TCID50/mlSite 235/361/3697.2%85.5%-99.9%51.031.261.2
LOW POS(1x LoD)4 TCID50/mlSite 336/360/36100.0%90.3%-100%63.828.144.0
LOW POS(1x LoD)4 TCID50/mlAll Sites107/1081/10899.1%94.9%-100%57.130.052.5
NegativeSite 10/288288/288100.0%98.7%-100%0.10.0N/A
NegativeSite 28/288280/28897.2%94.6%-98.8%0.74.1N/A
NegativeSite 30/288288/288100.0%98.7%-100%0.10.1N/A
NegativeAll Sites8/864856/86499.1%98.2%-99.6%0.32.4N/A

Table 10: Summary of hMPV Calls

Table 11: Summary of PIV 3 Calls

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PIV3ConcentrationSite# Positive# Negative% Agreementwith ExpectedResults95% CIMean(nA)Std Dev% CV
MOD POS(3x LoD)84 TCID50/mlSite 136/360/36100.0%90.3%-100%178.127.415.4
Site 236/360/36100.0%90.3%-100%193.829.815.4
Site 336/360/36100.0%90.3%-100%160.827.417.0
All Sites108/1080/108100.0%96.6%-100%177.631.117.5
LOW POS(1x LoD)28 TCID50/mlSite 136/360/36100.0%90.3%-100%139.034.825.1
Site 236/360/36100.0%90.3%-100%162.427.917.2
Site 336/360/36100.0%90.3%-100%126.938.930.7
All Sites108/1080/108100.0%96.6%-100%142.837.025.9
NegativeSite 10/288288/288100.0%98.7%-100%0.20.1N/A
Site 20/288288/288100.0%98.7%-100%0.20.1N/A
Site 30/288288/288100.0%98.7%-100%0.20.1N/A
All Sites0/864864/864100.0%99.6%-100%0.20.1N/A

Table 12: Summary of RSV A Calls

RSV A ConcentrationSite# Positive# Negative% Agreementwith ExpectedResults95% CIMean(nA)Std Dev% CV
MOD POS(3x LoD)8.4 TCID50/mlSite 136/360/36100.0%90.3%-100%166.319.211.5
Site 236/360/36100.0%90.3%-100%156.731.720.2
Site 336/360/36100.0%90.3%-100%156.422.914.7
All Sites108/1080/108100.0%96.6%-100%159.825.315.8
LOW POS(1x LoD)2.8 TCID50/mlSite 136/360/36100.0%90.3%-100%146.622.715.5
Site 236/360/36100.0%90.3%-100%124.641.032.9
Site 335/361/3697.2%85.5%-99.9%128.233.426.1
All Sites107/1081/10899.1%94.9%-100%133.134.325.8
NegativeSite 14/288284/28898.6%96.5%-99.6%0.74.0N/A
Site 20/288288/288100.0%98.7%-100%0.20.1N/A

{17}------------------------------------------------

RSV AConcentrationSite# Positive# Negative% Agreementwith ExpectedResults95% CIMean(nA)Std Dev% CV
Site 30/288288/288100.0%98.7%-100%0.20.2N/A
All Sites4/864860/86499.5%98.8%-99.9%0.42.3N/A

Testing of Dual Infection Samples

Clinically Relevant Co-Infections

An internal co-infection study was performed to determine the capability of the eSensor RVP to detect clinically relevant dual co-infections in patient samples. Nine clinically relevant coinfections were evaluated in this study. Dual co-infections were prepared by using the representative viral cultures at two different concentrations - Virus A at 1x LoD and Virus B at 10,000x LoD, as well as Virus A at 10,000x LoD and Virus B at 1x LoD. Relevant medical literature was sourced for selection of viral mix composition of common or expected co-infections.

The table below summarizes the TCIDsoml and LoD multiple detected in each viral co-infection.

Viral Co-Infection(Virus 1/Virus 2)Virus 1 DetectedVirus 2 Detected
LoDMultipleTCID50/mlLoDMultipleTCID50/ml
H3-RSV1x LoD$1.58 x 10^3$10,000x LoD$2.81 x 10^4$
RSV-H33x LoD$8.43 x 10^0$10,000x LoD$1.58 x 10^7$
H3-FLUB1x LoD$1.58 x 10^3$10,000x LoD$3.16 x 10^3$
FLUB-H31x LoD$3.16 x 10^{-1}$10,000x LoD$1.58 x 10^7$
H1N1-HRV3x LoD$3.15 x 10^{-1}$10,000x LoD$1.58 x 10^7$
HRV-H1N11x LoD$1.58 x 10^{-3}$10,000x LoD$1.05 x 10^3$
H1N1-PIV31x LoD$1.05 x 10^{-1}$10,000x LoD$2.81 x 10^5$
PIV3-H1N11x LoD$2.81 x 10^1$10,000x LoD$1.05 x 10^3$
H1N1-RSV1x LoD$1.05 x 10^{-1}$10,000x LoD$2.81 x 10^4$
RSV-H1N13x LoD$8.43 x 10^0$10,000x LoD$1.05 x 10^3$
RSV-ADV1x LoD$2.81 x 10^0$10,000x LoD$8.89 x 10^{-2}$
ADV-RSV1x LoD$8.89 x 10^{-2}$10,000x LoD$2.81 x 10^4$
HMPV-RSV1x LoD$4.17 x 10^0$10,000x LoD$2.81 x 10^4$
RSV-HMPV1x LoD$2.81 x 10^0$10,000x LoD$4.17 x 10^4$
HMPV-ADV1x LoD$4.17 x 10^0$10,000x LoD$8.89 x 10^{-2}$
ADV-HMPV1x LoD$8.89 x 10^{-2}$10,000x LoD$4.17 x 10^4$
HRV-RSV3x LoD$4.74 x 10^{-3}$10,000x LoD$2.81 x 10^4$
RSV-HRV1x LoD$2.81 x 10^0$10,000x LoD$1.58 x 10^7$

Table 13: Dual Infection Reproducibility Summary Results

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Interference

Interfering Substances

Potentially interfering substances were selected based on the fact that they could pre-exist in the specimen (e.g. blood, nasal secretions or mucus, and throat medications used to relieve congestion, nasal dryness, irritation, or asthma and allergy symptoms) as well as those that could be introduced during specimen collection and preparation. Each potentially interfering substance was tested individually with the exception of Luffa opperculata. Galphimia glauca. Histaminum hydrochloricum, and Sulfur, which were tested together as Zicam® Allergy Relief Nasal spray and Oxymetazoline and Menthol, which were tested together as Afrin® No Drip Severe Congestion nasal spray, thereby bringing the total to 21 potentially interfering test combinations. Viral samples representative of the 14 viral targets on the eSensor RVP were obtained from commercially available cultured cell lines as indicated in Table 14. Seven viral mixes were made, each containing unique viral targets. Viral mixes were added to each potentially interfering substance resulting in a final testing concentration of 3X LoD for each analyte. Each was extracted in triplicate with each extract tested once with the eSensor RVP. Twenty-four (24) potentially interfering substances were tested in this study with 21 combinations. Additionally, nine potentially interfering microorganisms (viral and bacterial) were also tested in the same manner as described above. The microorganisms and their testing concentrations are listed in Table 14. All substances and microorganisms tested for interference were shown to be compatible with the eSensor RVP. No potentially interfering substance or microorganism was shown to inhibit the eSensor RVP at all tested concentrations .

Potentially InterferingSubstanceActiveIngredientSubstanceFormTestedConcentration
Sample MatrixControl for no interfering substanceLiquidN/A
Viral transport mediumBecton Dickinson VTMLiquidN/A
Blood (human)BloodLiquid2% v/v
Human gDNA50 ng/rxn50 ng/rxn
Throat lozenges, oral anestheticand analgesicBenzocaineDry30% w/v
Menthol*Nasal Spray1% v/v
Mucin: bovine submaxillary gland,type I-SPurified mucin proteinDry1% w/v
Phenylephrine (Neo-Synephrine)Dry1.5% v/v
Nasal spraysor dropsOxymetazoline* (also contains BenzalkoniumChloride, Menthol, Eucalyptol, Camphor, benzylalcohol and phosphate buffers)Nasal Spray1% v/v
Sodium chlorideDry0.8% w/v
Antibacterial, systemicTobramycinDry5% w/v
Antibiotic, nasal ointmentMupirocinDry2% w/v
BeclomethasoneDry1.5% w/v
DexamethasoneDry1.5% w/v
Nasal corticosteroidsFlunisolideDry1.5% w/v
TriamcinoloneDry1.5% w/v
Budesonide (Pulmicort)Dry1.5% w/v
Fluticasone (Flonase)Dry3% w/v
Nasal gelLuffa opperculata**Nasal Gel1% v/v
Sulfur**Nasal Gel1% v/v

Table 14: Potentially Interfering Substances

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Potentially InterferingSubstanceActiveIngredientSubstanceFormTestedConcentration
Homeopathic allergy relief medicineGalphimia glauca**Nasal Gel1% v/v
Homeopathic allergy relief medicineHistaminum hydrochloricum**Nasal Gel1% v/v
FluMistLive intranasal influenza virus vaccine"Liquid0.5%-1% v/v
Anti-viral drugsZanamivir (Relenza®)Dry550 ng/ml
Anti-viral drugsOseltamivir (Tamiflu")Dry142 ng/ml
VirusCytomegalovirusCulture1 x 105 PFU/ml
VirusEnterovirus 71Culture1 x 105 PFU/ml
BacteriaStreptococcus pneumoniaeCulture
BacteriaBordetella pertussisCulture
BacteriaHaemophilus influenzaCulture
BacteriaMycoplasma pneumoniaeCulture1 x 106 CFU/ml
BacteriaStaphylococcus aureusCulture
BacteriaNeisseria meningitidisCulture
BacteriaCorynebacterium diptheriaeCulture

*Tested together (Afrin No Drip Severe Congestion nasal spray)

** Tested together (Zicam Allergy Relief)

  • FluMist vaccine: Addition of FluMist Live Intranasal Influenza Vaccine to the transport media control resulted in positive calls for Flu A, Flu A 2009 H1N1 and Flu B. This was due to the live attenuated influenza virus present in the vaccine.

4 Testing of FluMist at 1% (v/v) resulting in an inhibition in the detection of hMPV . FluMist did not inhibit the detection of hMPV when tested at 0.5% (v/v).

Cross-Reactivity

Cross-Reactivity Evaluation for Viruses Detected by the eSensor RVP

Cross-reactivity of each viral target (14 viral targets) was evaluated at high concentrations with the eSensor RVP by making three serial dilutions of viral reference strains with viral transport media (Remel M5) at 10,000x, 1000x and 100x the LoD. The titer of each virus dilution and corresponding LoD values were determined and provided in the table below. Cross-reactivity was not observed with any of the RVP viral targets at the concentrations tested. Table 15 summarizes the cross-reactivity results.

Viral TargetStrainLoDConcentration(TCID50/mL)Highest TestConcentration(TCID50/mL)Highest Multipleof LoD TestedCross-ReactivityResults
Flu AH1N1 Brisbane/59/074.17 x 10-14.17 x 10310,000xNot Observed
Flu A H1H1N1 Brisbane/59/074.17 x 10-14.17 x 10310,000xNot Observed
Flu AH3N21.58 x 1031.58 x 10710,000xNot Observed
Flu A H3H3N21.58 x 1031.58 x 10710,000xNot Observed
Flu A 2009 H1N1NY/20091.05 x 10-11.05 x 10310,000xNot Observed
Flu BFlorida/02/063.16 x 10-13.16 x 10310,000xNot Observed
hMPVB24.17 x 1004.17 x 10410,000xNot Observed
HRV31.58 x 10-31.58 x 10110,000xNot Observed
PIV1C352.81 x 10-22.81 x 10210,000xNot Observed

Table 15: Within Panel Cross-Reactivity Final Results

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Viral TargetStrainLoDConcentration(TCID50/mL)Highest TestConcentration(TCID5o/mL)Highest Multipleof LoD TestedCross-ReactivityResults
PIV2Greer2.81 x 1002.81 x 10410,000xNot Observed
PIV3C 2432.81 x 1012.81 x 10510,000xNot Observed
RSV AA22.81 x 1002.81 x 10410,000xNot Observed
RSV B93201.58 x 1001.58 x 10410,000xNot Observed
ADV B/EType 78.89 x 10-21.58 x 10510,000xNot Observed
ADV B/EType 41.58 x 101
ADV CType 18.89 x 1018.89 x 10510,000xNot Observed

Cross-Reactivity with Other Respiratory Viruses Not Targeted by the eSensor RVP Cross-reactivity with 5 respiratory viruses known to circulate with Jow frequency in the general population was assessed. All viral strains were diluted in M5 transport media to a titer of 100 PFU/mL and extracted using the bioMérieux easyMAG extraction method in triplicate. Following extraction, each replicate was tested once in the RVP assay.

Table 16: Cross-Reactivity Results of Rare Respiratory Virus

OrganismSourceTest ConcentrationsCross-Reactivity Results
Parainfluenza Virus 4Zeptometrix2.92 x 105 PFU/mLNot Observed
Coronavirus OC43*Zeptometrix5.96 x 104 PFU/mLNot Observed
Coronavirus 229EZeptometrix1.36 x 105 PFU/mLNot Observed
Coronavirus NL63**Zeptometrix9.89 x 104 PFU/mLNot Observed
Coronavirus HKU1Clinical IsolateN/A§Not Observed

*OC43 had one replicate fail the IC control at high (10) concentration.

**NL63 was tested at the highest concentration available - 9.89 x 10° PFU/mL.

3 The Coronavirus HKU1 sample was a clinical isolate identified during the method comparison study. The method used was qualitative so no copy information was available.

Cross-Reactivity with 17 additional viruses that are not targets of the eSensor RVP were also assessed (Table 17.)_All viral strains were diluted in M5 transport media to a titer of 10° PFU/mL and extracted using the bioMérieux easyMAG extraction method in triplicate reactions.

Table 17: Cross-Reactivity Results of with other Viruses
- A B - A - A - A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
OrganismSourceTest ConcentrationsCross-ReactivityResults
Adenovirus 18 (A)Zeptometrix VPL-0302.37 x $10^{5}$ PFU/mLNot Observed
Adenovirus 9 (D)Zeptometrix VPL-0304.63 x $10^{5}$ PFU/mLADV C False Positive*
Adenovirus 41 (F)Zeptometrix VPL-0308.05 x $10^{5}$ PFU/mLADV C False Positive*
Enterovirus 71Zeptometrix 0810047CF2.92 x $10^{5}$ PFU/mLNot Observed
Coxsackievirus A10Zeptometrix 0810106CF1.72 x $10^{5}$ PFU/mLNot Observed
Coxsackievirus A9Zeptometrix 0810017CF2.21 x $10^{5}$ PFU/mLNot Observed
Echovirus E6Zeptometrix 0810076CF7.16 x $10^{5}$ PFU/mLNot Observed
Coxsackievirus B2ATCC VR-296.22 x $10^{6}$ PFU/mLNot Observed
Coxsackievirus B3Zeptometrix 0810074CF1.06 x $10^{5}$ PFU/mLNot Observed
Coxsackievirus B4Zeptometrix 0810075CF8.04 x $10^{6}$ PFU/mL2/3 Not Observed1 HRV Positive**

{21}------------------------------------------------

OrganismSourceTest ConcentrationsCross-ReactivityResults
Coxsackievirus B5Zeptometrix 081019CF7.16 x $10^7$ PFU/mLNot Observed
Echovirus 9Zeptometrix 081007CF1.41 x $10^5$ PFU/mLNot Observed
Echovirus 25Zeptometrix VPL-0301.93 x $10^5$ PFU/mLNot Observed
Echovirus 30Zeptometrix 0810078CF9.89 x $10^4$ PFU/mLNot Observed
Coxsackievirus A21Zeptometrix 0810018CF2.92 x $10^5$ PFU/mLNot Observed
Coxsackievirus A24ATCC VR-5837.00 x $10^5$ PFU/mLNot Observed
Enterovirus 68ATCC VR-5611.40 x $10^5$ PFU/mLNot Observed
PoliovirusATCC VR-1931.11 x $10^5$ PFU/mL,HRV False Positive
BocavirusClinical IsolateN/ANot Observed
Herpesvirus 1: Herpes SimplexZeptometrix 0810005CF1.01 x $10^5$ PFU/mLNot Observed
Herpesvirus 3: Varicella ZosterZeptometrix 081 0026CF2.35 x $10^6$ copies/mLNot Observed
Herpesvirus 4: Epstein BarrZeptometrix 0810008CF1.06 x $10^5$ PFU/mLNot Observed
Herpesvirus 5: CytomegalovirusZeptometrix 0810003CF6.68 x $10^5$ PFU/mLNot Observed
MeaslesZeptometrix1.37 x $10^5$ PFU/mLNot Observed
MumpsZeptometrix 0810079CF1.93 x $10^5$ PFU/mLNot Observed

*ADV C cross-reactive signal was also obtained from Adenovirus 9 (D) and Adenovirus 41 (F) when it was

diluted 1000 fold from the initial testing concentration. Due to the genetic similarity between Adenovirus C, D,

and F, the eSensor RVP cannot reliably differentiate them. A positive eSensor RVP Adenovirus species C result should be followed-up using an alternative method (e.g., sequence analysis) if definitive Adenovirus speciation

is needed.

One replicate of Coxsackievirus B4 at high concentration (8.04 x 10° PFU/mL ) generated a HRV positive result which was silghtly above the assay threshold. None of the other thirteen (13) enterovinus analytes tested at similar high concentrations generated a positive call for HRV.

5 Due to the genetic similarity between human rhinovirus and poliovirus, the eSensor RVP cannot reliably

differentiate them. If a polio infection is suspected, a positive eSensor RVP human rhinovirus (HRV) result

should be confirmed using an alternate method (e.g., cell culture).

Quantification of the viral RNA contained in the Herpesvirus-3 (Varicella Zoster Virus) sample was performed using realtime RT-PCR and provided in copies/mL

Cross-Reactivity with Bacteria and Fungus

Bacterial and fungal strains were tested for cross-reactivity with the eSensor RVP and were diluted in M5 transport media to a titer of 108 CFU/mL. These organisms were extracted in triplicate with the bioMérieux easyMAG system.

Following extraction, each replicate was tested once using the eSensor RVP as shown in Table 18.

OrganismSourceTest ConcentrationsCross-Reactivity Results
Acinetobacter baumaniiZeptometrix 0801597$5.2 x 10^8$ CFU/mLNot Observed
Bordetella parapertussisZeptometrix 0801461$9.8 x 10^8$ CFU/mLNot Observed
Bordetella pertussisZeptometrix 0801459$5.8 x 10^8$ CFU/mLNot Observed
Burkholderia cepaciaZeptometrix BacT-050$2.3 x 10^8$ CFU/mLNot Observed
Candida albicansZeptometrix 0801504$1.0 x 10^8$ CFU/mLNot Observed
Candida glabrataZeptometrix 0801535$9.73 x 10^8$ CFU/mLNot Observed
Chlamydophila pneumoniae DNAABI 08-942-250$1.4 x 10^7$ copies/mLNot Observed
Corynebacterium diphtheriaeZeptometrix BacT-050$3.58 x 10^8$ CFU/mLNot Observed

Table 18: Cross-Reactivity Results of with Bacteria and Fungus

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OrganismSourceTest ConcentrationsCross-ReactivityResults
Escherichia coliZeptometrix 08016241.5 x 106 CFU/mLNot Observed
Haemophilus influenzaeZeptometrix 08016802.6 x 106 CFU/mLNot Observed
Klebsiella pneumoniaeZeptometrix 08015061.07 x 106 CFU/mLNot Observed
Lactobacillus acidophilusZeptometrix 08015402.12 x 106 CFU/mLNot Observed
Lactobacillus planarumZeptometrix 08015071.75 x 106 CFU/mLNot Observed
Legionella pneumophilaZeptometrix 08016452.6 x 106 CFU/mLNot Observed
Moraxella catarrhalisZeptometrix 08015093.9 x 106 CFU/mLNot Observed
Mycobacterium tuberculosisZeptometrix 08016602.2 x 106 CFU/mLNot Observed
Mycoplasma pneumoniaeZeptometrix 08015792.47 x 106 CCU/mLNot Observed
Neisseria meningiditisZeptometrix 08015113.37 x 106 CFU/mLNot Observed
Neisseria siccaZeptometrix 08017543.37 x 106 CFU/mLNot Observed
Porphyromonas gingivalisZeptometrix BacT-0503.55x106 CFU/mLNot Observed
Proteus vulgarisZeptometrix BacT-0501.0 x 106 CFU/mLNot Observed
Pseudomonas aeruginosaZeptometrix 08015191.05 x 106 CFU/mLNot Observed
Serratia marcescensZeptometrix 08017236.1 x 106 CFU/mLNot Observed
Staphylococcus aureus (COL)Zeptometrix 08016388.4 x 106 CFU/mLNot Observed
Staphylococcus aureus (MSSA)Zeptometrix 08016751.2 x 106 CFU/mLNot Observed
Staphylococcus epidermidis (MSSE)Zeptometrix 08016892.2 x 106 CFU/mLNot Observed
Staphylococcus epidermidis (MRSE)Zeptometrix 08016516.2 x 106 CFU/mLNot Observed
Staphylococcus haemolyticusZeptometrix 08015912.16 x 106 CFU/mLNot Observed
Streptococcus agalactiaeZeptometrix 08015452.2 x 106 CFU/mLNot Observed
Streptococcus dysgalactiaeZeptometrix 08015166.46 x 106 CFU/mLNot Observed
Streptococcus mitisZeptometrix 08016952.43 x 106 CFU/mLNot Observed
Streptococcus pneumoniaeZeptometrix 08014392.8 x 106 CFU/mLNot Observed
Streptococcus pyrogenesZeptometrix 08015121.55 x 106 CFU/mLNot Observed
Streptococcus salivariusZeptometrix BacT-0506.53 x 106 CFU/mLNot Observed

Carryover/Cross-Contamination

The carryover/cross-contamination study challenged the extraction, RT-PCR, and detection portions of the assay within and between runs and operators tested over the course of five testing days. A representative strain of Parainfluenza Virus 3 was obtained as a commercially available cultured cell line. Positive Parainfluenza Virus 3 samples were prepared at a concentration of 1.00 x 10 TCIDgomL (3559x LoD) while negative samples were un-inoculated Remel M5 transport media. All samples were extracted using the bioMérieux easyMAG System. Five sets of alternating high concentration positive and negative samples were extracted and tested in a checkerboard pattern. Each set of samples contained 24 tests (12 positive and 12 negative). Total number of tests for the duration of the study was 120 samples (60 positive and 60 negative).

No carryover/cross-contamination was observed in the eSensor RVP, as 100% of the PIV 3 negative samples were reported as 'Target Not Detected'.

{23}------------------------------------------------

CLINICAL PERFORMANCE DATA

Clinical Performance

Expected Values

A prospective clinical study testing nasopharyngeal (NP) swab specimens was conducted during the 2010/11 influenza season at three North American clinical laboratories. The expected values of individual analytes based on eSensor RVP results in prospective samples are summarized in Tables 19 and 20. The expected values of mixed co-infections based on eSensor RVP results in prospective samples are summarized in Tables 21 and 22.

Virus (Analyte)Age 0-1(N = 270)Age >1-5(N = 136)Age >5-21(N = 127)Age >21-65(N = 333)Age >65(N = 171)All Ages(N = 1037)
N (%)N (%)N (%)N (%)N (%)N (%)
Influenza A (Un-Subtypable)2 (0.7)0 (0.0)2 (1.6)5 (1.5)1 (0.6)10 (1.0)
Influenza A (Total)25 (9.3)22 (16.2)17 (13.4)84 (25.2)31 (18.1)179 (17.3)
Influenza A H312 (4.8)15 (11.0)7 (5.5)43 (12.9)22 (12.9)99 (9.5)
Influenza A 2009 H1N110 (3.7)8 (5.9)6 (4.7)33 (9.9)7 (4.1)64 (6.2)
Influenza B10 (3.7)17 (12.5)33 (26.0)15 (4.5)7 (4.1)82 (7.9)
Human Metapneumovirus18 (6.7)11 (8.1)3 (2.4)15 (4.5)10 (5.9)57 (5.5)
Human Rhinovirus82 (30.4)27 (19.9)21 (16.6)26 (7.8)11 (6.4)167 (16.1)
Parainfluenza Virus 13 (1.1)0 (0.0)1 (0.8)0 (0.0)1 (0.6)5 (0.5)
Parainfluenza Virus 21 (0.4)1 (0.7)0 (0.0)3 (0.9)2 (1.2)7 (0.7)
Parainfluenza Virus 343 (15.9)15 (11.0)5 (3.9)18 (5.4)5 (2.9)86 (8.3)
Respiratory Syncytial Virus A69 (25.6)21 (15.4)8 (6.3)11(3.3)10 (5.8)119 (11.4)
Respiratory Syncytial Virus B28 (10.4)17 (12.5)4 (3.2)14 (4.2)6 (3.5)69 (6.7)
Adenovirus B/E6 (2.2)8 (5.9)3 (1.6)5 (1.8)0 (0.0)22 (2.1)
Adenovirus C21 (7.7)4 (2.9)1 (0.8)9 (2.7)6 (3.5)41 (3.9)

Table 19: Expected Value (As Determined by eSensor RVP) Summary by Age Group in the Prospective Clinical Evaluation

Table 20: Expected Value (As Determined by eSensor RVP) Summary by Site in the Prospective Clinical Evaluation

Virus (Analyte)Site 1(N = 245)Site 2(N = 533)Site 3(N = 259)All Sites(N = 1037)
N (%)N (%)N (%)N (%)
Influenza A (Un-Subtypable)0 (0.0)8 (1.5)2 (0.8)10 (1.0)
Influenza A (Total)58 (23.7)89 (16.7)32 (12.4)179 (17.3)
Influenza A H332 (13.1)54 (10.1)13 (5.0)99 (9.5)

{24}------------------------------------------------

Virus (Analyte)Site 1(N = 245)Site 2(N = 533)Site 3(N = 259)All Sites(N = 1037)
N (%)N (%)N (%)N (%)
Influenza A 2009 H1N119 (7.8)28 (5.3)17 (6.6)64 (6.2)
Influenza B4 (1.6)59 (11.1)19 (7.3)82 (7.9)
Human Metapneumovirus23 (9.4)25 (4.7)9 (3.5)57 (5.5)
Human Rhinovirus44 (18.0)99 (18.6)24 (9.3)167 (16.1)
Parainfluenza Virus 10 (0.0)4 (0.8)1 (0.4)5 (0.5)
Parainfluenza Virus 21 (0.4)6 (1.1)0 (0.0)7 (0.7)
Parainfluenza Virus 33 (1.2)68 (12.8)15 (5.8)86 (8.3)
Respiratory Syncytial Virus A17 (6.9)85 (15.9)17 (6.6)119 (11.4)
Respiratory Syncytial Virus B15 (6.1)41 (7.7)13 (5.0)69 (6.7)
Adenovirus B/E0 (0.0)14 (2.6)8 (3.1)22 (2.1)
Adenovirus C16 (6.5)19 (3.6)6 (2.3)41 (3.9)
Table 21: Expected Value (Co-infections as Determined by eSensor RVP) Summary by Age
Group in the Prospective Clinical Evaluation

and the comments of the comments of the comments of

Co-InfectionAge 0-1(N = 270)Age >1-5(N = 136)Age >5-21(N = 127)Age >21-65(N = 333)Age >65(N = 171)All Ages(N = 1037)
NNNNNN (%)
ADV B/E + Flu B000202 (0.2)
ADV B/E + HRV020002 (0.2)
ADV B/E + PIV3300003 (0.3)
ADV B/E + RSV A110002 (0.2)
ADV B/E + RSV B010001 (0.1)
ADV B/E + HMPV + HRV + RSV A + RSV B100001 (0.1)
ADV C + Flu B100001 (0.1)
ADV C + HMPV300003 (0.3)
ADV C + HRV310116 (0.6
ADV C + PIV3000101 (0.1)
ADV C + RSV A220004 (0.4)
ADV C + RSV B100113 (0.3)
ADV C + HRV + PIV3100001 (0.1)
ADV C + HRV + RSV A100001 (0.1)
Flu A + ADV B/E001001 (0.1)
Flu A + ADV C110226 (0.6)
Flu A + Flu B001102 (0.2)
Flu A + HMPV000112 (0.2)
Flu A + HRV300014 (0.4)
Flu A + PIV2000011 (0.1)
Flu A + PIV3200002 (0.2)

.

and the comments of the comments of the comments of

{25}------------------------------------------------

Co-InfectionAge 0-1(N = 270)Age >1-5(N = 136)Age >5-21(N = 127)Age >21-65(N = 333)Age >65(N = 171)All Ages(N = 1037)
NNNNNN (%)
Flu A + RSV A100001 (0.1)
Flu A + RSV B010102 (0.2)
Flu A + HRV + PIV3200002 (0.2)
Flu A + RSV A + RSV B200002 (0.2)
Flu A + ADV C + HRV + RSV A100001 (0.1)
Flu A + ADV C + HRV + PIV3100001 (0.1)
Flu B + HRV101114 (0.4)
Flu B + PIV3020013 (0.3)
Flu B + RSV A202015 (0.5)
Flu B + RSV B010001 (0.1)
Flu B + HRV + PIV2010001 (0.1)
Flu B + HRV + RSV A200002 (0.2)
HMPV + HRV410005 (0.5)
HMPV + PIV3000101 (0.1)
HMPV + RSV B000101 (0.1)
HRV + PIV1200002 (0.2)
HRV + PIV2100001 (0.1)
HRV + PIV39011011 (1.1)
HRV + RSV A11311016 (1.6)
HRV + RSV B620008 (0.8)
HRV + PIV3 + RSV A100001 (0.1)
HRV + PIV3 + RSV B010001 (0.1)
PIV3 + RSV A130206 (0.6)
PIV3 + RSV B000101 (0.1)

Table 22: Expected Value (Co-infections as Determined by eSensor RVP) Summary by Site in the Prospective Clinical Evaluation

Co-InfectionSite 1(N = 245)NSite 2(N = 533)NSite 3(N = 259)NAll Sites(N = 1037)N (%)
ADV B/E + Flu B0022 (0.2)
ADV B/E + HRV0202 (0.2)
ADV B/E + PIV30213 (0.3)
ADV B/E + RSV A0112 (0.2)
ADV B/E + RSV B0101 (0.1)
ADV B/E + HMPV + HRV + RSV A +RSV B0011 (0.1)
ADV C + Flu B0101 (0.1)
ADV C + HMPVCo-Infection1Site 1(N = 245)N2Site 2(N = 533)N0Site 3(N = 259)N3 (0.3)All Sites(N = 1037)N (%)
ADV C + HRV2316 (0.6)
ADV C + PIV30101 (0.1)
ADV C + RSV A1304 (0.4)
ADV C + RSV B3003 (0.3)
ADV C + HRV + PIV30101 (0.1)
ADV C + HRV + RSV A0101 (0.1)
Flu A + ADV B/E0101 (0.1)
Flu A + ADV C3216 (0.6)
Flu A + Flu B0112 (0.2)
Flu A + HMPV1012 (0.2)
Flu A + HRV2204 (0.4)
Flu A + PIV21001 (0.1)
Flu A + PIV30202 (0.2)
Flu A + RSV A0101 (0.1)
Flu A + RSV B0112 (0.2)
Flu A + HRV + PIV30202 (0.2)
Flu A + RSV A + RSV B0202 (0.2)
Flu A + ADV C + HRV + RSV A0101 (0.1)
Flu A + ADV C + HRV + PIV30101 (0.1)
Flu B + HRV1304 (0.4)
Flu B + PIV30213 (0.3)
Flu B + RSV A0235 (0.5)
Flu B + RSV B0101 (0.1)
Flu B + HRV + PIV20101 (0.1)
Flu B + HRV + RSV A0202 (0.2)
HMPV + HRV2215 (0.5)
HMPV + PIV30011 (0.1)
HMPV + RSV B1001 (0.1)
HRV + PIV10202 (0.2)
HRV + PIV20101 (0.1)
HRV + PIV3011011 (1.1)
HRV + RSV A312116 (1.6)
HRV + RSV B1618 (0.8)
HRV + PIV3 + RSV A0101 (0.1)
HRV + PIV3 + RSV B0101 (0.1)
PIV3 + RSV A2406 (0.6)
PIV3 + RSV B0011 (0.1)

.

.

r ·

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.

:

27

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Prospective Clinical Study

All clinical specimens in the prospective clinical study were nasopharyngeal (NP) swab specimens, prospectively collected and tested during the 2010/11 influenza season at three North American clinical laboratories. Clinical laboratories were located in Cleveland. Ohio: Providence, RI; and Albuquerque, NM. Demographic details for patient population are summarized in Table 23. Study sites enrolled subjects from diverse demographic groups; about 40% of the specimens were obtained from patients enrolled at a hospital. The remaining specimens were collected from outpatients and patients in an emergency department. A total of 1182 patient samples were collected prospectively across the three clinical sites from January 2011. Out of these patient samples, 1037 were evaluable. A total of 145 samples were excluded for the following reasons: samples not tested within 5 days of specimen collection (72/145), operator and/or easyMAG mechanical errors (62/145), samples not retested (11/145). Out of the 1037 samples collected, an even split of patients were male and female. Approximately one quarter of the samples came from children under the age of 1, and patients aged 21-65 contributed the largest share of the samples.

DemographicSite 1N = 245 (%)Site 2N = 533 (%)Site 3N = 259 (%)All SitesN = 1037 (%)
SEX
Male105 (42.9)296 (55.5)117 (45.2)518 (50.0)
Female140 (57.1)237 (44.5)142 (54.8)519 (50.0)
AGE (yrs)
0 - 146 (18.8)197 (37.0)27 (10.4)270 (26.0)
> 1 - 520 (8.2)94 (17.6)22 (8.4)136 (13.1)
> 5 - 2119 (7.8)82 (15.4)26 (10.0)127 (12.2)
> 21 - 6597 (39.6)106 (19.9)130 (50.2)333 (32.1)
> 6563 (25.7)54 (10.1)54 (20.8)171 (16.5)
SUBJECT STATUS
Outpatient7 (2.9)219 (41.1)90 (34.7)316 (30.5)
Hospitalized131 (53.5)162 (30.4)114 (44.0)407 (39.2)
Emergency Department107 (43.7)152 (28.5)55 (21.2)314 (30.3)

Table 23: General Demographic Data for Prospectively Collected Specimens (N=1037)

A total of 1037 specimens were evaluated for all 14 RVP panel viruses with the prospectively collected samples, the performance for each respiratory virus was described by the clinical sensitivity and specificity. Sensitivity for a respiratory virus is the ability of the test to obtain positive results for this respiratory virus in the samples with positive results obtained by the comparator method for the particular virus. Specificity for a respiratory virus is the ability of the test to obtain negative results for this respiratory virus in the samples with negative results obtained by the comparator method for this respiratory virus. Depending on the comparator method used for a particular virus, performance is described as sensitivity/specificity or Positive Percent Agreement (PPA)/Negative Percent Agreement (NPA).

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The performance of the RVP assay was compared to the established gold standard reference method of viral culture for most viral targets. For respiratory viruses in which culture was not available, a composite (multi-lest) reference method (a predetermined algorithm that combined the results of a few tests) was used as the comparator method. As seen in Table 24, viral culture followed by DFA identification testing was used as the comparator method for Influenza A, Influenza B, RSV, Parainfluenza Viruses (PIV1, PIV2, PIV3), and adenovirus. Since viral culture cannot determine the subtype for influenza A. RSVs, and adenoviruses, these viruses were subtyped by an independently developed qRT-PCR assay or qPCR assay followed by bidirectional sequencing to determine the subtypes (Influenza A H3, Influenza A 2009 H1N1, RSVA, RSVB, ADVB/E and ADVC). HRV and HMPV were evaluated using two independently developed and validated gRT-PCR assays followed by bidirectional sequencing.

Virus (Analyte)Comparator MethodSubtyping
Influenza A
Influenza A H1
Influenza A H3
Influenza A 2009 H1N1
RSV AViral culture followed by DFA identification1qRT-PCR + BidirectionalSequencing
RSV B
Adenovirus B/E
Adenovirus C
Influenza B
PIV 1Viral culture followed by DFA identification2N/A
PIV 2
PIV 3
Human Metapneumovirus2 qRT-PCR (2 methods) with BidirectionalSequencing3N/A
Human Rhinovirus

Validated Performance of the eSensor RVP assay detecting Influenza A, RSV or ADV respectively was

Table 24: Comparator Methods used to assess RVP performance

compared to viral culture followed by fluorescent antibody identification. "True" Influenza A, RSV or ADV positives respectively, were considered as any sample that tested positive for Influenza A, RSV or ADV respectively, by viral culture followed by DFA testing. True positive samples were subtyped using one analytically validated gRT-PCR assay with bi-directional sequence confirmation. The comparator assays were designed to amplify a different sequence from that amplified by the eSensor RVP assay(s). None of the comparator PCR assays overlapped any RVP amplicon sequence even if the same gene was targeted. "True" Influenza A H1, H3, or 2009 H1N1 positives, respectively, were considered as any sample that tested positive for Influenza A by viral culture, and had bi-directional sequencing pre-defined quality acceptance criteria that matched Influenza A/H1, A/H3, or A/2009 H1 sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih.gov), respectively, with acceptable Evalues. "True" RSV A or RSV B positively, were considered as any sample that tested positive for Influenza A by viral culture, and had bi-directional sequencing data meeting pre-defined quality acceptance criteria that matched RSV A or RSV B sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih.gov), respectively, with acceptable E-values. "True" ADV C or ADV B/E positives, respectively, were considered as any sample that tested positive for Influenza A by viral culture, and had bi-directional sequencing data meeting pre-defined quality acceptance criteria that matched ADV C or ADV B/E sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih.gov), respectively, with acceptable E-values. Performance of the eSensor RVP assay detecting Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2 and Parainfluenza Virus 3 respectively was compared to viral culture followed by fluorescent antibody identification. "True" Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2 or Parainfluenza Virus 3 positives, respectively, were considered as any sample that tested positive for Influenza Virus

  1. Parainfluenza Virus 2, or Parainfluenza Virus 3. respectively, by viral culture followed by DFA testing. 3 Performance of the eSensor RVP assay detecting Human Rhinovirus or Human Metapneumovirus, respectively, was compared to a predetermined algorithm that used composite comparator methods. The methods consist of two analytically validated PCR assays followed by bi-directional sequencing. "True" Human

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Rhinovirus or Human Metapneumovirus positively, were considered as any sample that had bidirectional sequencing data meeting pre-defined quality acceptance criteria that matched Human Rhinovirus or Human Metapneumovirus sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih. gov), respectively, with acceptable E-values.

Sensitivity or positive percent agreement (PPA) was calculated by dividing the number of true positive (TP) results by the sum of true positive and false negative (FN) results, while specificity or negative percent agreement (NPV) was calculated by dividing the number of true negative (TN) results by the sum of true negative and false positive (FP) results. A TP result was one where the positive RVP result matched the positive reference/comparator result, while a TN result was one whereby a negative RVP result matched a negative reference/comparator result. The two-sided 95% confidence interval was also calculated. The results are summarized below.

Virus (Analyte)TP/(TP+FN)SensitivitySpecificity
Percent95% CITN/(TN+FP)Percent95% CI
Influenza A¹132/137ª96.4%91.7% - 98.8%850/897ᵇ94.8%93.1% - 96.1%
Influenza A H1*0/0NANA1027/1027100.0%99.6% - 100.0%
Influenza A H374/74100.0%95.1% - 100.0%927/952ᶜ97.4%96.2% - 98.3%
Influenza A 2009 H1N149/49100.0%92.7% - 100.0%956/971ᵈ98.5%97.5% - 99.1%
Influenza B64/69ᵉ92.8%83.9% - 97.6%947/965ᶠ98.1%97.1% - 98.9%
Parainfluenza Virus 1*4/4100.0%39.8% - 100.0%1029/1030ʲ99.9%99.5% - 100.0%
Parainfluenza Virus 2*5/6ⁱ83.3%35.9% - 99.6%1026/1028ᵏ99.8%99.3% - 100.0%
Parainfluenza Virus 364/68ˡ94.1%85.6% - 98.4%944/966ᵐ97.7%96.6% - 98.6%
Respiratory Syncytial Virus A68/68100.0%94.7% - 100.0%905/956ⁿ94.7%93.1% - 96.0%
Respiratory Syncytial Virus B28/28100.0%87.7% - 100.0%955/996ᵒ95.9%94.5% - 97.0%
Adenovirus B/E*13/13100.0%75.3% - 100.0%1012/1021ᵖ99.1%98.3% - 99.5%
Adenovirus C*6/6100.0%54.1% - 100.0%993/1028q96.6%95.3% - 97.5%
Virus (Analyte)TP/(TP+FN)PPANPA
Percent95% CITN/(TN+FP)Percent95% CI
Human Metapneumovirus55/55100.0%93.5% - 100.0%979/981ʳ99.8%99.3% - 100.0%
Human Rhinovirus132/14889.2%83.0% - 93.7%853/888ˢ96.1%94.6% - 97.3%

Table 25: Performance in Prospective Clinical Specimens (N=1037)

*These viral targets were supplemented with retrospective samples as shown below.

1 Influenza A results contain 14 Flu A samples without a positive subtype and 123 samples with either Influenza A H3 or 2009 H1N1 positive results.

4 Flu A was not detected in all 5 RVP False Negative samples using independently developed and validated aPCR assays.

b Flu A viruses were confirmed positive in 35/47 RVP False Positive samples using bidirectional sequencing.

° Flu A H3 viruses were confirmed positive in 22/25 RVP False Positive samples using bidirectional sequencing.

9 Flu A 2009 H1N1 viruses were confirmed positive in 14/15 RVP False Positive samples using bidirectional sequencing.

8 Flu B was not detected in 4/5 RVP False Negative samples using bidirectional sequencing.

' Flu B was confirmed positive in 11/18 RVP False Positive samples using bidirectional sequencing.

0 hMPV was confirmed positive in 1/2 RVP False Positive samples using bidirectional sequencing.

" HRV was confirmed positive in 7/35 RVP False Positive samples using bidirectional sequencing.

| PIV 1 was not detected in this RVP False Positive sample by bidirectional sequencing.

PIV 2 was not detected in this RVP False Negative sample using independently developed and validated gPCR assays.

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  • PIV 2 virus was confirmed positive in 0/2 RVP False Positive samples by bidirectional sequencing. ' PIV 3 was not detected in 4/4 RVP False Negative samples using independently developed and validated
  • qPCR assays.
    ™ PIV 3 virus was confirmed positive in 10/22 RVP False Positive samples using bidirectional sequencing.

" RSV A were confirmed positive in 43/51 RVP False Positive samples using bidirectional sequencing.

° RSV B was confirmed positive in 35/41 RVP False Positive samples using bidirectional sequencing.

º ADV B/E was confirmed positive in 8/9 RVP False Positive samples using bidirectional sequencing.

9 ADV C was confirmed positive in 16/35 False Positive samples using bidirectional sequencing.

The eSensor RVP system detected a total of 128 mixed infections in the prospective clinical evaluation (1037 tested and analyzed specimens). This represents 18.4% of the total positive specimens (128/696). One hundred fourteen (114/128; 89.1%) were double infections, eleven (11/128, 8.6%) were triple infections, and three (3/128; 2.3%) samples with four or more RVP analytes were identified. Ninety five of the 128 samples contained one or more analytes that the reference/comparator method failed to detect.

Analyte1Analyte2Analyte3Analyte4Analyte5Total NumberofCo-infectionsNumber ofDiscrepantCo-infectionsDiscrepantAnalyte(s)
ADV B/EFlu B22ADV B (2), Flu B (1)
ADV B/EHRV20
ADV B/EPIV333ADV B (3)
ADV B/ERSV A22ADV B (1), RSV A (2)
ADV B/ERSV B11RSV B (1)
ADV B/EHMPVHRVRSV ARSV B11RSV A (1), RSV B (1)
ADV CFlu B11ADV C (1)
ADV CHMPV33ADV C (3)
ADV CHRV64ADV C (4), HRV (1)
ADV CPIV311ADV C (1)
ADV CRSV A44ADV C (3), RSV A (2)'
ADV CRSV B33ADV C (3), RSV B (2)
ADV CHRVPIV311ADV C (1)
ADV CHRVRSV A10
Flu AADV B/E11Flu A
Flu AADV C66ADV C (6)
Flu AFlu B22Flu A (2), HRV (1)
Flu AHMPV22H1N1 (1), H3 (1), HMPV (1) .
Flu AHRV42H1N1 (1), HRV (2)
Flu APIV211PIV2 (1)
Flu APIV322Flu A (1), PIV3 (2)
Flu ARSV A11RSV A (1)
Distinct Co-infection Combinations Detectedby eSensor RVPTotal NumberofCo-infectionsNumber ofDiscrepantCo-infectionsDiscrepantAnalyte(s)
Analyte1Analyte2Analyte3Analyte4Analyte5
Flu ARSV B22RSV B (2)
Flu AHRVPIV321H1N1 (1)
Flu ARSV ARSV B22RSV A (2), RSV B (2)
Flu AADV CHRVRSV A11ADV C (1), HRV (1)
Flu AADV CHRVPIV311ADV C (1), Flu A (1), PIV3 (1)
Flu BHRV42Flu B (1), HRV (1)
Flu BPIV333Flu B (2), PIV3 (2)
Flu BRSV A55Flu B (2), RSV A (5)
Flu BRSV B11RSV B (1)
Flu BHRVPIV211HRV (1), PIV2 (1)
Flu BHRVRSV A21RSV A (1)
HMPVHRV51HMPV (1)
HMPVPIV310
HMPVRSV B11RSV B (1)
HRVPIV121PIV1 (1)
HRVPIV211HRV (1)
HRVPIV3114HRV (4), PIV3 (2)
HRVRSV A169HRV (5), RSV A (6)
HRVRSV B86HRV (1), RSV B (5)
HRVPIV3RSV A11RSV A (1)
HRVPIV3RSV B11RSV B (1)
PIV3RSV A66PIV3 (4), RSV A (5)
PIV3RSV B11PIV3 (1), RSV B (1)
Total Number of Co-infections12895117/278
Total Number of Double Infections1148599/232
Total Number of Triple Infections11811/33
Total Number of Quadruple Infections225/8
Total Number of Quintuple Infections112/5

Table 26: Distinct Co-infection Combinations Detected by the eSensor RVP Assay in the Prospective Clinical Trial

31

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*A discrepant co-infection or discrepant analyte was defined as one that was detected by RVP but not the reference/comparator methods.

'117/117 discrepant analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 58/117 cases.

16/6 discrepant ADV B/E analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 5/6 cases

°24/24 discrepant ADV C analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 11/24 cases

for discrepant Flu B analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 3/6 cases

4/4 discrepant Flu A 2009 H1N1 analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 4/4 cases

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° // discrepant Flu A H3 analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 1/1 cases

'2/2 discrepant HMPV analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 1/2 cases

919/19 discrepant HRV analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 3/19 cases

"12/12 discrepant PIV3 analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 3/12 cases

'27/27 discrepant RSV A analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 17/27 cases

17/17 discrepant RSV B analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 11/17 cases

Table 27: Additional Co-Infection Combinations Detected by Reference/Comparator Methods, But Not by the eSensor RVP Assay in the Prospective Clinical Trial

Distinct Co-InfectionCombinations*TotalNumber ofCo-InfectionsNumber ofDiscrepantCo-infectionsDiscrepantAnalyte(s)
Analyte 1Analyte 2
Flu BHRV63Flu B (2), HRV (3)
Flu BRSV B11Flu B (1), RSV B (1)
HRVPIV3133HRV (3), PIV3 (3)

*This table includes only co-infections that were detected by the reference/comparator method but not by RVP; the remaining co-infections detected by the reference/comparator method are already represented in Table above.

OrganismCombinationsNumberofSamples% ofSamplesAnalyzed(N=1037)OrganismCombinationsNumberofSamples% ofSamplesAnalyzed(N=1037)
ADV B/E + Flu B20.2Flu A + HRV + PIV320.2
ADV B/E + HRV20.2Flu A + RSV A + RSV B20.2
ADV B/E + PIV330.3Flu A + ADV C + HRV + PIV310.1
ADV B/E + RSV A20.2Flu A + ADV C + HRV + RSV A10.1
ADV B/E + RSV B10.1Flu B + HRV40.4
ADV B/E + HMPV + HRV + RSV A +RSV B10.1Flu B + PIV330.3
ADV C + Flu B10.1Flu B + RSV A50.5
ADV C + HMPV30.3Flu B + RSV B10.1
ADV C + HRV60.6Flu B + HRV + PIV210.1
ADV C + PIV310.1Flu B + HRV + RSV A20.2
ADV C + RSV A40.4HMPV + HRV50.5
ADV C + RSV B30.3HMPV + PIV310.1
ADV C + HRV + PIV310.1HMPV + RSV B10.1
ADV C + HRV + RSV A10.1HRV + PIV120.2

Table 28: Mixed Infections Detected by eSensor RVP in Prospective Samples

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OrganismCombinationsNumberofSamples% ofSamplesAnalyzed(N=1037)OrganismCombinationsNumberofSamples% ofSamplesAnalyzed(N=1037)
Flu A + ADV B/E10.1HRV + PIV210.1
Flu A + ADV C60.6HRV + PIV3111.1
Flu A + Flu B20.2HRV + RSV A161.6
Flu A + HMPV20.2HRV + RSV B80.8
Flu A + HRV40.4HRV + PIV3 + RSV A10.1
Flu A + PIV210.1HRV + PIV3 + RSV B10.1
Flu A + PIV320.2PIV3 + RSV A60.6
Flu A + RSV A10.1PIV3 + RSV B10.1
Flu A + RSV B20.2Total Mixed Infections12812.3

93% (963/1037) of the evaluable prospective clinical specimens vielded valid results on the first attempt. Invalid results or no results were obtained for the remaining 74 specimens (45 of which generated results on the first run, but required retesting due to a negative control failure caused by operator error). Data generated from the retests was used in the final analysis. All 74 specimens yielded valid results after a single retest when tested according the retest recommendations.

Testing of Preselected Archived Samples

Banked samples previously characterized as positive for Influenza A H1, Parainfluenza Virus 1, Parainfluenza Virus 2, Adenovirus B/E, and Adenovirus C were used to supplement the performance studies for these analytes. These frozen banked samples were collected from various sites across the United States or from the Centers for Disease Control and Prevention (CDC). Upon arrival at GenMark, banked samples were blinded and intermixed with negative samples before being sent for testing, which was conducted by multiple sites involved in the prospective analysis of the patient samples. Testing of the banked samples was performed identically to prospectively-collected patient specimens. Results from the banked samples are presented separately from the prospectively collected specimens.

A total of 343 retrospective banked samples were collected for analysis. Out of this sample set, 11 samples were sent which didn't contain a banked viral target so these eleven samples were not tested further. Eight additional samples were excluded as they didn't contain a banked viral target as originally reported by the collection site and confirmed by comparator testing. Two samples reported errors on targets but were not retested as indicated. One sample was not sequenced. One sample had an internal control failure but was not retested as indicated. After these data were excluded, a total of 320 banked samples (including negative samples) for 5 viral targets were collected and analyzed.

With the exception of Flu A H1 samples, these banked samples were also sent to Beckman Coulter for comparator testing, and the results from the Beckman Coulter testing were compared to the results obtained by the eSensor RVP. Since the Flu A H1 samples came from the Centers for Disease Control and Prevention and were verified to be Flu A H1, these samples were not sent to Beckman Coulter for further testing. The results are summarized in Table 29.

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Positive Percent AgreementNegative Percent Agreement
VirusTP/(TP+FN)Percent95% CITN/(TN+FP)Percent95% CI
Influenza A H129/3096.7%82.8% - 99.9%290/290100%98.7% - 100.0%
Parainfluenza Virus 125/25100.0%86.3% - 100.0%289/29598.0%95.6% - 99.3%
Parainfluenza Virus 226/26100.0%86.8% - 100.0%284/29496.6%93.8% - 98.4%
Adenovirus B/E25/25100.0%86.3% - 100.0%290/29598.3%96.1% - 99.4%
Adenovirus C16/16100.0%80.6% - 100.0%270/30488.8%84.8% - 91.9%

Table 29: Performance in Retrospective Clinical Specimens (N=320)

eSensor RVP Performance in Fresh vs. Frozen Clinical Specimen

Simulated viral specimens were prepared by spiking viral transport media (Remel M5) with two different concentrations of ADV C viral culture (3x LoD and 1x LoD). To evaluate the performance of frozen specimens, 128 aliguots of ADV C (64 replicates each at 3x and 1x LoD) were prepared. Sixty four aliquots (32 at each testing concentration) were tested immediately after preparation (fresh) while 64 aliquots were tested after undergoing two freeze/thaw cycles (frozen). Positive percent agreement between RVP results from fresh versus frozen aliquots for all concentrations tested was calculated. The positive percent agreement between RVP results from fresh versus frozen aliquots was 100% (95% confidence interval 89.3% - 100%).

Prospective 2X2 Performance Tables:

Influenza A
Reference
eSensor RVPPositiveNegativeTotal
Positive13247a179
Negative5b850855
Total1378971034
Sensitivity: 96.4% (95% CI: 91.7% - 98.8%)
Specificity: 94.8% (95% CI: 93.1% - 96.1%)

Table 30: Prospective Influenza A Results

a Influenza A virus was confirmed positive in 35/47 RVP False Positive samples using bidirectional sequencing. b Influenza A virus was not detected in all 5 RVP False Negative samples using independently developed and validated qPCR assays.

Table 31: Prospective Influenza A H1 Results
------------------------------------------------------
Influenza A H1
Reference
eSensor RVPPositiveNegativeTotal
Positive000
Negative010271027
Total010271027
Sensitivity: N/A
Specificity: 100.0% (95% CI: 99.6% - 100.0%)

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Influenza A H3
eSensor RVPReference
PositiveNegativeTotal
Positive7425a99
Negative0927927
Total749521026
Sensitivity: 100.0% (95% CI: 95.1% - 100.0%)
Specificity: 97.4% (95% CI: 96.2% - 98.3%)

Table 32: Prospective Influenza A H3 Results

a Influenza A H3 virus was confirmed positive in 22/25 RVP False Positive samples using bidirectional sequencing.

Influenza A 2009 H1N1
eSensor RVPReference
PositiveNegativeTotal
Positive4915a64
Negative0956956
Total499711020
Sensitivity: 100.0% (95% CI: 92.7% - 100.0%)
Specificity: 98.5% (95% CI: 97.5% - 99.1%)

Table 33: Prospective Influenza A 2009 H1N1 Results

a Influenza A 2009 HINI virus was confirmed positive in 14/15 RVP False Positive samples using bidirectional sequencing.

Influenza B
eSensor RVPReference
PositiveNegativeTotal
Positive6418a82
Negative5b947952
Total699651034
Sensitivity: 92.8% (95% CI: 83.9% - 97.6%)
Specificity: 98.1% (95% CI: 97.1% - 98.9%)

Table 34: Prospective Influenza B Results

a Influenza B virus was confirmed positive in 11/18 RVP False Positive samples using bidirectional sequencing.

b Influenza B virus was not detected in 4/5 RVP False Negative samples using independently developed and validated qPCR assays.

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Respiratory Syncytial Virus A
eSensor RVPReference
PositiveNegativeTotal
Positive6851a119
Negative0905905
Total689561024
Sensitivity: 100.0% (95% CI: 94.7% - 100.0%)
Specificity: 94.7% (95% CI: 93.1% - 96.0%)

Table 35: Prospective RSVA Results

a Respiratory Syncytial Virus type A was confirmed positive in 43/51 RVP False Positive samples using bidirectional sequencing.

Respiratory Syncytial Virus B
eSensor RVPReferencePositiveNegativeTotal
Positive28.41a69
Negative0955955
Total289961024
Sensitivity: 100.0% (95% CI: 87.7% - 100.0%)
Specificity: 95.9% (95% CI: 94.5% - 97.0%)

Table 36: Prospective RSVB Results

a Respiratory Syncytial Virus type B was confirmed positive in 35/41 RVP False Positive samples using bidirectional sequencing.

Parainfluenza Virus 1
Reference
eSensor RVPPositiveNegativeTotal
Positive41a5
Negative010291029
Total410301034
Sensitivity: 100.0% (95% CI: 39.8% - 100.0%)
Specificity: 99.9% (95% CI: 99.5% - 100.0%)

Table 37: Prospective PIV1 Results

a PIV 1 was not detected in this RVP False Positive sample by bidirectional sequencing.

{37}------------------------------------------------

Parainfluenza Virus 2
eSensor RVPReference
PositiveNegativeTotal
Positive52a7
Negative1b10261027
Total610281034
Sensitivity: 83.3% (95% CI: 35.9% - 99.6%)
Specificity: 99.8% (95% CI: 99.3% - 100.0%)

Table 38: Prospective PIV2 Results

a Parainfluenza type 2 virus was confirmed positive in 0/2 RVP False Positive samples by bidirectional sequencing.

b Parainfluenza type 2 virus was not detected in this RVP False Negative sample using independently developed and validated qPCR assays.

Parainfluenza Virus 3
eSensor RVPReference
PositiveNegativeTotal
Positive6422a86
Negative4b944948
Total689661034
Sensitivity: 94.1% (95% CI: 85.6% - 98.4%)
Specificity: 97.7% (95% CI: 96.6% - 98.6%)

Table 39: Prospective PIV3 Results

a Parainfluenza type 3 virus was confirmed positive in 10/22 RVP False Positive samples using bidirectional sequencing. b Parainfluenza type 3 virus was not detected in 4/4 RVP False Negative samples using independently developed and validated qPCR assays.

Human Metapneumovirus
eSensor RVPReference
PositiveNegativeTotal
Positive552a57
Negative0979979
Total559811036
Sensitivity: 100.0% (95% CI: 93.5% - 100.0%)
Specificity: 99.8% (95% CI: 99.3% - 100.0%)

Table 40: Prospective HMPV Results

a Human metapneumovirus was confirmed positive in 1/2 RVP False Positive samples using bidirectional sequencing.

{38}------------------------------------------------

Human Rhinovirus
eSensor RVPReference
PositiveNegativeTotal
Positive13235a167
Negative16853869
Total1488881036
Sensitivity: 89.2% (95% CI: 83.0% - 93.7%)
Specificity: 96.1% (95% CI: 94.6% - 97.3%)

Table 41: Prospective HRV Results

a Human rhinovirus was confirmed positive in 7/35 RVP False Positive samples using bidirectional sequencing.

Adenovirus B/E
Reference
eSensor RVPPositiveNegativeTotal
Positive139a22
Negative010121012
Total1310211034
Sensitivity: 100.0% (95% CI: 75.3% - 100.0%)
Specificity: 99.1% (95% CI: 98.3% - 99.5%)
Table 42: Prospective ADV B/E Results

a Adenovirus type B/E was confirmed positive in 8/9 RVP False Positive samples using bidirectional sequencing.

Table 43: Prospective ADV C Results
----------------------------------------

:

Adenovirus C
eSensor RVPReference
PositiveNegativeTotal
Positive635a41
Negative0993993
Total610281034
Sensitivity: 100.0% (95% CI: 54.1% - 100.0%)
Specificity: 96.6% (95% CI: 95.3% - 97.5%)

a Adenovirus type C was confirmed positive in 16/35 RVP False Positive samples using bidirectional sequencing.

{39}------------------------------------------------

Retrospective 2X2 Performance Tables:

Influenza A (Banked Samples)
eSensor RVPReference
PositiveNegativeTotal
Positive29029
Negative1290291
Total30290320
Positive Percent Agreement: 96.7% (95% CI: 82.8% - 99.9%)
Negative Percent Agreement: 100.0% (95% CI: 98.7% - 100.0%)

Table 44: Retrospective Influenza A H1 Results

r Table 45: Retrospective PIV1 Results

PIV1 (Banked Samples)
eSensor-RVPReferencePositiveNegativeTotal
Positive25631
Negative0289289
Total25295320
Positive Percent Agreement: 100.0% (95% CI: 86.3% - 100.0%)
Negative Percent Agreement: 98.0% (95% CI: 95.6% - 99.3%)

Table 46: Retrospective PIV2 Samples

PIV2 (Banked Samples)
eSensor RVPReference
PositiveNegativeTotal
Positive261036
Negative0284284
Total26294320
Positive Percent Agreement: 100.0% (95% CI: 86.8% - 100.0%)
Negative Percent Agreement: 96.6% (95% CI: 93.8% - 98.4%)

Table 47: Retrospective ADV B/E Results

ADV B/E (Banked Samples)
eSensor RVPReference PositiveReference NegativeTotal
Positive25530
Negative0290290
Total25295320
Positive Percent Agreement: 100.0% (95% CI: 86.3% - 100.0%)
Negative Percent Agreement: 98.3% (95% CI: 96.1% - 99.4%)

·

{40}------------------------------------------------

Table 48: Retrospective ADV C Results
ADV C (Banked Samples)
eSensor RVPReference
PositiveNegativeTotal
Positive163450
Negative0270270
Total16304320
Positive Percent Agreement: 100.0% (95% CI: 80.6% - 100.0%)
Negative Percent Agreement: 88.8% (95% CI: 84.8% - 91.9%)

. . . . .

.

.

.

Table 48: Retrospective ADV C Results

.

:

.

And Children Children

{41}------------------------------------------------

DEPARTMENT OF HEALTH & HUMAN SERVICES

Image /page/41/Picture/1 description: The image shows the logo for the U.S. Department of Health & Human Services. The logo is circular and contains the words "DEPARTMENT OF HEALTH & HUMAN SERVICES - USA" around the perimeter. Inside the circle is an abstract image of an eagle or other bird with its wings spread.

Public Health Service

SEP

Food and Drug Administration 10903 New Hampshire Avenue Silver Spring, MD 20993

1 0 2012

GenMark Diagnostics, Inc.
c/o Joel Centeno
VP Regulatory, Quality, Clinical
5964 La Place Court
Carlsbad, CA 92008

c/o Joel Centeno
VP Regulatory, Quality, Clinical
5964 La Place Court
Carlsbad, CA 92008

Re: K113731 Trade/Device Name: eSensor® Respitory Viral Panel (RVP) Regulation Number: 21 CFR 866.3980 Regulation Name: Respitory viral panel multiplex nucleic acid assay Regulatory Class: Class II Product Code: OCC, OEM, OOU, OEP, OQW, NSU, OUL, JJH Dated: September 4, 2012 Received: September 6, 2012

Dear Mr. Centeno:

We have reviewed your Section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration.

If your device is classified (see above) into class II (Special Controls), it may be subject to such additional controls. Existing major regulations affecting your device can be found in Title 21, Code of Federal Regulations (CFR), Parts 800 to 895. In addition, FDA may publish further announcements concerning your device in the Federal Register.

Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Parts 801 and 809); medical device reporting (reporting of medical device-related adverse events) (21 CFR 803); and good manufacturing practice

{42}------------------------------------------------

Page 2 - Mr. Joel Centeno

requirements as set forth in the quality systems (QS) regulation (21 CFR Part 820). This letter will allow you to begin marketing your device as described in your Section 510(k) premarket notification. The FDA finding of substantial equivalence of your device to a legally marketed predicate device results in a classification for your device and thus, permits your device to proceed to the market.

If you desire specific advice for your device on our labeling regulation (21 CFR Parts 801 and 809), please contact the Office of In Vitro Diagnostic Device Evaluation and Safety at (301) 796-5450. Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21 CFR Part 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to

http://www.fda.gov/MedicalDevices/Safety/ReportalProblem/default.htm for the CDRH's Office of Surveillance and Biometrics/Division of Postmarket Surveillance.

You may obtain other general information on your responsibilities under the Act from the Division of Small Manufacturers, International and Consumer Assistance at its toll-free number (800) 638-2041 or (301) 796-7100 or at its Internet address http://www.fda.gov/cdrh/industry/support/index.html.

Sincerely yours,

Soy aos

Sally A. Hojvat, M.Sc., Ph.D. Director Division of Microbiology Devices Office of In Vitro Diagnostic Device Evaluation and Safety Center for Devices and Radiological Health

Enclosure

{43}------------------------------------------------

Indications for Use Form

510(k) Number (if known): K113731

Device Name: eSensor® Respiratory Viral Panel (RVP)

Indications for Use:

The eSensor® Respiratory Viral Panel (RVP) is a qualitative nucleic acid multiplex In vitro diagnostic test intended for use on the eSensor XT-8TM system for the simulaneous detection of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals exhibiting signs and symptoms of respiratory infection.

The following virus types and subtypes are identified using the eSensor RVP: Influenza A H1 Seasonal Subtype, Influenza A H3 Seasonal Subtype, Influenza A 2009 H1N1 sublype, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza Virus 2, Parainfluenza Virus 3, Human Metapneumovirus, Human Rhinovirus, Adenovirus species B/E, and Adenovirus species C.

The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory intection aids in the diagnosis of respiratory viral Infection if used in conjunction with other clinical and epidemiological information.

Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other patient management decisions. Positive results do not nate out bacterial infection with other viruses. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence and radiography) and clinical presentation must be taken into consideration in the final diagnosis of respiratory viral infection.

Performance characteristics for Influenza A were established during the 2010/2011 influenza A 2009 H1N1 and H3N2 were the predominant Influenza A viruses in circulation. When other Influenza A viruses emerge performance characteristics may vary.

If infection with a novel Influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.

X
Prescription Use
(Part 21 CFR 801 Subpart D)
AND/OR
Over-The-Counter Use
(21 CFR 801 Subpart C

(21 CFR 801 Subpart C)

(PLEASE DO NOT WRITE BELOW THIS LINE-CONTINUE ON ANOTHER PAGE OF NEEDED)

Concurrence of CDRH, Office of In Vitro Diagnostic Devices (OIVD)

Tamara Feldblyum

Division Sign-Off Office of In Vitro Diagnostic Device Evaluation and Safety

510(k) K113731

Page 1 of 1

§ 862.2310 Clinical sample concentrator.

(a)
Identification. A clinical sample concentrator is a device intended to concentrate (by dialysis, evaporation, etc.) serum, urine, cerebrospinal fluid, and other body fluids before the fluids are analyzed.(b)
Classification. Class I (general controls). The device is exempt from the premarket notification procedures in subpart E of part 807 of this chapter subject to the limitations in § 862.9.