(266 days)
The eSensor® Respiratory Viral Panel (RVP) is a qualitative nucleic acid multiplex in vitro diagnostic test intended for use on the eSensor XT-8™ system for the simultaneous detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals exhibiting signs and symptoms of respiratory infection.
The following virus types and subtypes are identified using the eSensor RVP: Influenza A, Influenza A H1 Seasonal Subtype, Influenza A H3 Seasonal Subtype; Influenza A 2009 H1N1 subtype, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza Virus 3, Human Metapneumovirus, Human Rhinovirus, Adenovirus species B/E, and Adenovirus species C.
The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and epidemiological information.
Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other patient management decisions. Positive results do not rule out bacterial infection, or co-infection with other viruses. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence and radiography) and clinical presentation must be taken into consideration in the final diagnosis of respiratory viral infection.
Performance characteristics for Influenza A were established during the 2010/2011 influenza season when Influenza A 2009 H1N1 and H3N2 were the predominant Influenza A viruses in circulation. When other Influenza A viruses emerge, performance characteristics may vary.
If infection with a novel Influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.
For prescription use only.
The eSensor RVP is a multiplex microarray-based genotyping test system. It is based on the principles of competitive DNA hybridization using a sandwich assay format, wherein a singlestranded target binds concurrently to sequence-specific solution-phase signal probe and solidphase electrode-bound capture probe. The test employs reverse transcription polymerase chain reaction amplification, exonuclease digestion and hybridization of target DNA/RNA. In the process, the double-stranded PCR amplicons are digested with exonuclease to generate singlestranded DNA suitable for hybridization. Hybridization occurs in the eSensor XT-8 Cartridge (described below) where the single-stranded target DNA is mixed with a hybridization solution containing labeled signal probes.
During hybridization, the single-stranded target DNA binds to a complementary, single-stranded capture probe immobilized on the working electrode surface. Single-stranded signal probes (labeled with electrochemically active ferrocenes) bind to the target adjacent to the capture probe. When inserted into the eSensor XT-8 instrument (described below), simultaneous hybridization of target to signal probes and capture probe is detected by alternating current voltammetry (ACV). Each pair of working electrodes on the array contains a different capture probe, and sequential analysis of each electrode allows detection of multiple viral targets.
The eSensor XT-8 cartridge device consists of a printed circuit board (PCB) with a multi-layer laminate and a plastic cover that forms a hybridization chamber. The cartridge is fitted with a pump and check valves that circulate the hybridization when inserted into the eSensor XT-8 instrument. The PCB chip consists of an array of 72 gold-plated working electrodes, a silver reference electrode, and two gold-plated auxiliary electrodes. Each working electrode has a connector contact pad on the opposite side of the chip for electrical connection to the eSensor XT-8 instrument. Each electrode is modified with a multi-component; self-assembled monolayer that includes oligonucleotide capture probes specific for each polymorphic site on the test panel and insulator molecules. The cartridge also contains an electrically erasable programmable readonly memory component (EEPROM) that stores information related to the cartridge (e.g., assay identifier, cartridge lot number, and expiration date).
The eSensor XT-8 instrument was previously cleared for IVD use by the FDA under K073720 and K090901.
The eSensor XT-8 is a clinical multiplex instrument that has a modular design consisting of a base module and one, two, or three cartridge-processing towers containing 8, 16, or 24 cartridge slots, respectively. The cartridge slots operate independently of each other. Any number of cartridges can be loaded at one time, and the remaining slots are available for use while the instrument is running.
The base module controls each processing tower, provides power, and stores and analyzes data. The instrument is designed to be operated solely with the touch screen interface. Entering patient accession numbers and reagent lot numbers can be performed by the bar code scanner or the touch screen.
Each processing tower consists of eight cartridge modules, each containing a cartridge connector, a precision-controlled heater, an air pump, and electronics. The air pumps drive the pump and valve system in the cartridge, eliminating fluid contact between the instrument and the cartridge. The pneumatic pumping enables recirculation of the hybridization solution allowing the target DNA and the signal probes to hybridize with the complementary capture probes on the electrodes. The pump in the cartridge is connected to a pneumatic source from the eSensor XT-8 instrument and provides unidirectional pumping of the hybridization mixture through the channel during hybridization. Using this process to circulate the hybridization solution minimizes the unstirred boundary laver at the electrode surface and continuously replenishes the volume above the electrode that has been depleted of complementary targets and signal probes.
The XT-8 instrument provides electrochemical detection of bound signal probes by ACV and subsequent data analysis and test report generating functions. All hybridization, ACV scanning and analysis parameters are defined by a scanning protocol loaded into the XT-8 Software, and then specified for use by the EEPROM on each cartridge.
Principle of eSensor Technology: eSensor technology uses a solid-phase electrochemical method for determining the presence of one or more of a defined panel of virus target sequences. Purified DNA/RNA is isolated from the patient specimen according to defined laboratory procedures and the extracted nucleic acid is reverse transcribed and/or amplified using virus specific primers with an RT-PCR enzyme mix. The amplified DNA is converted to single-stranded DNA via exonuclease digestion and is then combined with a signal buffer containing ferrocenelabeled signal probes that are specific for the different viral targets. The mixture of amplified sample and signal buffer is loaded onto a cartridge containing single-stranded oligonucleotide capture probes bound to gold-plated electrodes. The cartridge is inserted into the XT-8 instrument where the single-stranded targets hybridize to the complementary sequences of the capture probes and signal probes, as shown in Figure 1. The presence of each target is determined by voltammetry, which generates specific electrical signals from the ferrocene-labeled signal probe.
The eSensor RVP provides a qualitative result based upon the presence (Positive) or absence (Target Not Detected) of the viruses contained in the panel along with the internal MS2 control. Positive and negative results are determined based on the electrical signals generated being either above or below specified signal boundaries, respectively.
I will provide a summary of the acceptance criteria and study information for the eSensor® Respiratory Viral Panel (RVP) based on the provided text.
eSensor® Respiratory Viral Panel (RVP) Acceptance Criteria and Study Details
1. Table of Acceptance Criteria and Reported Device Performance
The acceptance criteria for the eSensor RVP are embedded within the "Sensitivity" (Positive Percent Agreement - PPA) and "Specificity" (Negative Percent Agreement - NPA) results of the clinical performance study. The reported performance for each viral target is presented below, representing the device meeting these implicit criteria.
| Virus (Analyte) | Acceptance Criteria (Implicit) | Reported Device Performance (Prospective Clinical Specimens) (95% CI) | Reported Device Performance (Retrospective Clinical Specimens) (95% CI) |
|---|---|---|---|
| Influenza A | High sensitivity and specificity for detection. | PPA: 96.4% (91.7% - 98.8%), NPA: 94.8% (93.1% - 96.1%) | N/A (H1 subtype specifically reported retrospectively) |
| Influenza A H1 | High sensitivity and specificity for detection. | Sensitivity: N/A (0/0 cases), Specificity: 100.0% (99.6% - 100.0%) (for prospective samples not detecting H1) | PPA: 96.7% (82.8% - 99.9%), NPA: 100.0% (98.7% - 100.0%) |
| Influenza A H3 | High sensitivity and specificity for detection. | PPA: 100.0% (95.1% - 100.0%), NPA: 97.4% (96.2% - 98.3%) | N/A |
| Influenza A 2009 H1N1 | High sensitivity and specificity for detection. | PPA: 100.0% (92.7% - 100.0%), NPA: 98.5% (97.5% - 99.1%) | N/A |
| Influenza B | High sensitivity and specificity for detection. | PPA: 92.8% (83.9% - 97.6%), NPA: 98.1% (97.1% - 98.9%) | N/A |
| Parainfluenza Virus 1 | High sensitivity and specificity for detection. | PPA: 100.0% (39.8% - 100.0%), NPA: 99.9% (99.5% - 100.0%) | PPA: 100.0% (86.3% - 100.0%), NPA: 98.0% (95.6% - 99.3%) |
| Parainfluenza Virus 2 | High sensitivity and specificity for detection. | PPA: 83.3% (35.9% - 99.6%), NPA: 99.8% (99.3% - 100.0%) | PPA: 100.0% (86.8% - 100.0%), NPA: 96.6% (93.8% - 98.4%) |
| Parainfluenza Virus 3 | High sensitivity and specificity for detection. | PPA: 94.1% (85.6% - 98.4%), NPA: 97.7% (96.6% - 98.6%) | N/A |
| Human Metapneumovirus (hMPV) | High positive and negative percent agreement when compared to validated comparator methods. | PPA: 100.0% (93.5% - 100.0%), NPA: 99.8% (99.3% - 100.0%) | N/A |
| Human Rhinovirus (HRV) | High positive and negative percent agreement when compared to validated comparator methods. | PPA: 89.2% (83.0% - 93.7%), NPA: 96.1% (94.6% - 97.3%) | N/A |
| Respiratory Syncytial Virus A | High sensitivity and specificity for detection. | PPA: 100.0% (94.7% - 100.0%), NPA: 94.7% (93.1% - 96.0%) | N/A |
| Respiratory Syncytial Virus B | High sensitivity and specificity for detection. | PPA: 100.0% (87.7% - 100.0%), NPA: 95.9% (94.5% - 97.0%) | N/A |
| Adenovirus B/E | High sensitivity and specificity for detection. | PPA: 100.0% (75.3% - 100.0%), NPA: 99.1% (98.3% - 99.5%) | PPA: 100.0% (86.3% - 100.0%), NPA: 98.3% (96.1% - 99.4%) |
| Adenovirus C | High sensitivity and specificity for detection (with a note on potential cross-reactivity due to genetic similarity with other Adenovirus spp.) | PPA: 100.0% (54.1% - 100.0%), NPA: 96.6% (95.3% - 97.5%) (Note: also mentions 16/35 RVP False Positives confirmed true) | PPA: 100.0% (80.6% - 100.0%), NPA: 88.8% (84.8% - 91.9%) (Note: also mentions 16/35 RVP False Positives confirmed true) |
2. Sample Sizes Used for the Test Set and Data Provenance
- Prospective Clinical Study:
- Total Samples Collected: 1182 nasopharyngeal (NP) swab specimens.
- Evaluable Samples: 1037 specimens. (145 excluded due to not tested within 5 days of collection, operator/easyMAG errors, or not retested/sequenced).
- Data Provenance: Prospective collection from January 2011 during the 2010/2011 influenza season. Collected at three North American clinical laboratories (Cleveland, Ohio; Providence, RI; and Albuquerque, NM).
- Retrospective Clinical Study:
- Total Samples Collected: 343 banked samples.
- Evaluable Samples: 320 banked samples (for 5 viral targets: Influenza A H1, PIV1, PIV2, ADV B/E, ADV C).
- Data Provenance: Frozen banked samples previously characterized as positive for certain analytes. Collected from various sites across the United States or from the Centers for Disease Control and Prevention (CDC).
3. Number of Experts Used to Establish the Ground Truth for the Test Set and Their Qualifications
The document does not explicitly state the number or specific qualifications (e.g., "radiologist with 10 years of experience") of experts involved in establishing the ground truth. However, it indicates the following methods were used:
- For most viral targets (Flu A, Flu B, RSV, PIV1, PIV2, PIV3, Adenovirus): "established gold standard reference method of viral culture followed by DFA identification testing."
- For subtyping (Influenza A H3, Influenza A 2009 H1N1, RSVA, RSVB, ADVB/E, ADVC): "independently developed qRT-PCR assay or qPCR assay followed by bidirectional sequencing."
- For HRV and hMPV: "two independently developed and validated qRT-PCR assays followed by bidirectional sequencing."
- For discrepancy resolution: Bidirectional sequencing was used to investigate discrepant results for many analytes (e.g., 35/47 RVP False Positive Influenza A samples were confirmed positive by sequencing, 22/25 RVP False Positive Influenza A H3 samples confirmed positive by sequencing, etc.). This implies expert interpretation of sequencing data.
While specific expert details are not provided, the ground truth relies on established laboratory "gold standard" methods and advanced molecular techniques (RT-PCR/qPCR and bidirectional sequencing), which are inherently performed and interpreted by trained laboratory professionals.
4. Adjudication Method (e.g., 2+1, 3+1, none) for the Test Set
The primary method for establishing ground truth was comparison to established reference methods (viral culture + DFA or multiple PCR/sequencing methods). For cases where the RVP result disagreed with the initial comparator method (often leading to "False Positive" or "False Negative" categories in the 2x2 tables), bidirectional sequencing was used as a tertiary method for "confirmation." This suggests a form of adjudication, where sequencing serves as a higher-level tie-breaker or confirmatory test rather than a simple 2+1 or 3+1 consensus among human readers.
5. If a Multi-Reader Multi-Case (MRMC) Comparative Effectiveness Study Was Done
No, a Multi-Reader Multi-Case (MRMC) comparative effectiveness study was not done. The study focuses on the standalone performance of the eSensor RVP diagnostic device compared to laboratory-based reference methods, not on how human readers improve with or without AI assistance. The device is a "qualitative nucleic acid multiplex in vitro diagnostic test," and its output is automated.
6. If a Standalone (i.e., algorithm only without human-in-the-loop performance) Was Done
Yes, a standalone performance study was conducted. The clinical performance data presented (sensitivity/PPA and specificity/NPA) are measures of the eSensor RVP as a standalone diagnostic device, comparing its automated qualitative results against reference laboratory methods. The device is described as having "Automated test interpretation and report generation."
7. The Type of Ground Truth Used
The ground truth for the test set was established using a combination of:
- Laboratory Reference Methods:
- Viral Culture followed by DFA identification: For Influenza A, Influenza B, RSV, Parainfluenza Viruses (PIV1, PIV2, PIV3), and Adenovirus.
- Composite (Multi-Test) Reference Method: For Human Metapneumovirus and Human Rhinovirus, consisting of "two independently developed and validated qRT-PCR assays followed by bidirectional sequencing."
- qRT-PCR/qPCR followed by Bidirectional Sequencing: Used for subtyping Influenza A and RSV, and for determining subtypes of Adenovirus. Also used as a confirmatory method for resolving discrepancies identified between the eSensor RVP and initial reference methods.
- Publicly Available Databases: Bidirectional sequencing results were compared to sequences in the National Center for Biotechnology Information (NCBI) GenBank database.
8. The Sample Size for the Training Set
The document primarily describes validation studies and does not explicitly state the sample size of a distinct training set used for the development or initial optimization of the eSensor RVP itself. The clinical performance data are derived from independent test sets (prospective and retrospective clinical samples). Device development would involve internal validation and optimization, but specific training set sizes are not provided in this regulatory summary.
9. How the Ground Truth for the Training Set Was Established
Since a specific "training set" with established ground truth is not detailed, the methods described for establishing ground truth for the test sets (viral culture, DFA, qRT-PCR/qPCR, bidirectional sequencing, and comparison to NCBI GenBank for sequence matching) would logically be the same types of methods implied for any internal development or training efforts during the device's creation.
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510(k) Summary
| 510(k) Summary | |||
|---|---|---|---|
| Submitter Name: | GenMark Diagnostics | ||
| Address: | 5964 La Place CourtCarlsbad, CA 92008 | ||
| Contact: | Joel CentenoVice President, Quality, Regulatory, and Clinical Affairs | ||
| Phone: | 1 (760) 448-4304 | ||
| Fax: | 1 (760) 683-6821 | ||
| E-mail: | joel.centeno@genmarkdx.com | ||
| Date Prepared: | December 16, 2011 | ||
| Device Trade Name: | eSensor® Respiratory Viral Panel (RVP) | ||
| Device Common Name: | Respiratory Viral Panel Multiplex Nucleic Acid Assay System | ||
| Measurand: | Viral RNA/DNA of the following targets: | ||
| Target | Abrv. | Target | Abrv. |
| Influenza A | Flu A | Human Rhinovirus | HRV |
|---|---|---|---|
| Influenza A H1 | Flu A H1 | Human Metapneumovirus | hMPV |
| Influenza A H3 | Flu A H3 | Adenovirus B/E | ADV B/E |
| Influenza A 2009 H1N1 | 2009 H1N1 | Adenovirus C | ADV C |
| Influenza B | Flu B | Parainfluenza Virus 1 | PIV 1 |
| Respiratory Syncytial Virus A | RSV A | Parainfluenza Virus 2 | PIV 2 |
| Respiratory Syncytial Virus B | RSV B | Parainfluenza Virus 3 | PIV 3 |
| Sample Type: | Nasopharyngeal Swab (NPS) |
|---|---|
| Technology: | Polymerase Chain Reaction (PCR) |
| Device Panel: | OIVD Division of Immunology and Microbiology |
| Classification Name: | Respiratory Viral Panel Multiplex Nucleic Acid Assay, 866.3980Instrumentation for clinical multiplex test systems, 862.2570 |
| Classification Code: | OCC: Respiratory viral panel multiplex nucleic acid assayOEM: Human Metapneumovirus (hMPV) RNA assay systemOEP: Influenza A virus subtype differentiation nucleic acid assayOOU: Parainfluenza Multiplex Nucleic Acid AssayNSU: Instrumentation for clinical multiplex test systems |
| Predicate Device(s): | Luminex® xTag™ RVP, 510(k) Number K081483Classification Code: OCC, OEM, OEPRegulation No. 866.3980eSensor® Warfarin Sensitivity Test, 510(k) No. K073720Classification Code (applicable): NSU Instrumentation forClinical Multiplex Test Systems |
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Intended Use:
The eSensor® Respiratory Viral Panel (RVP) is a qualitative nucleic acid multiplex in vitro diagnostic test intended for use on the eSensor XT-8™ system for the simultaneous detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals exhibiting signs and symptoms of respiratory infection.
The following virus types and subtypes are identified using the eSensor RVP: Influenza A, Influenza A H1 Seasonal Subtype, Influenza A H3 Seasonal Subtype; Influenza A 2009 H1N1 subtype, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza Virus 3, Human Metapneumovirus, Human Rhinovirus, Adenovirus species B/E, and Adenovirus species C.
The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and epidemiological information.
Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other patient management decisions. Positive results do not rule out bacterial infection, or co-infection with other viruses. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence and radiography) and clinical presentation must be taken into consideration in the final diagnosis of respiratory viral infection.
Performance characteristics for Influenza A were established during the 2010/2011 influenza season when Influenza A 2009 H1N1 and H3N2 were the predominant Influenza A viruses in circulation. When other Influenza A viruses emerge, performance characteristics may vary.
If infection with a novel Influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.
For prescription use only.
Indication for Use: Same as Intended Use
Device Description:
The eSensor RVP is a multiplex microarray-based genotyping test system. It is based on the principles of competitive DNA hybridization using a sandwich assay format, wherein a singlestranded target binds concurrently to sequence-specific solution-phase signal probe and solidphase electrode-bound capture probe. The test employs reverse transcription polymerase chain reaction amplification, exonuclease digestion and hybridization of target DNA/RNA. In the process, the double-stranded PCR amplicons are digested with exonuclease to generate singlestranded DNA suitable for hybridization. Hybridization occurs in the eSensor XT-8 Cartridge (described below) where the single-stranded target DNA is mixed with a hybridization solution containing labeled signal probes.
During hybridization, the single-stranded target DNA binds to a complementary, single-stranded capture probe immobilized on the working electrode surface. Single-stranded signal probes (labeled with electrochemically active ferrocenes) bind to the target adjacent to the capture probe. When inserted into the eSensor XT-8 instrument (described below), simultaneous hybridization of
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target to signal probes and capture probe is detected by alternating current voltammetry (ACV). Each pair of working electrodes on the array contains a different capture probe, and sequential analysis of each electrode allows detection of multiple viral targets.
| Box | Component | Packaging & Quantity | Storage |
|---|---|---|---|
| eSensor*Respiratory ViralPanel Cartridges | eSensor® RVP Cartridges | 6 foil bags with 8 cartridgeseach in each cartridge pack | 10-25 °C |
| eSensor® Respiratory Viral PanelProduct Insert | 1 copy | Dry place(retain for reference) | |
| eSensor*Respiratory ViralPanel AmplificationReagents | RVP Enzyme Mix | 2 vials with 40 µL each | -15 to -30 °C |
| RVP PCR Mix | 2 vials with 1000 µL each | (in a designated pre-PCR location) | |
| MS2 Internal Control | 2 vials with 300 µL each | ||
| eSensor*Respiratory ViralPanel DetectionReagents | RVP Signal Buffer | 2 vials with 2200 µL each | |
| Exonuclease | 2 vials with 145 µL each. | -15 to -30 °C(in a designated post-PCR location) | |
| Buffer-1 | 2 vials with 350 µL each | ||
| Buffer-2 | 2 vials with 700 µL each |
Table 1: Reagents supplied with the kit:
The Assay Cartridge (eSensor XT-8 Cartridge)
The eSensor XT-8 cartridge device consists of a printed circuit board (PCB) with a multi-layer laminate and a plastic cover that forms a hybridization chamber. The cartridge is fitted with a pump and check valves that circulate the hybridization when inserted into the eSensor XT-8 instrument. The PCB chip consists of an array of 72 gold-plated working electrodes, a silver reference electrode, and two gold-plated auxiliary electrodes. Each working electrode has a connector contact pad on the opposite side of the chip for electrical connection to the eSensor XT-8 instrument. Each electrode is modified with a multi-component; self-assembled monolayer that includes oligonucleotide capture probes specific for each polymorphic site on the test panel and insulator molecules. The cartridge also contains an electrically erasable programmable readonly memory component (EEPROM) that stores information related to the cartridge (e.g., assay identifier, cartridge lot number, and expiration date).
The eSensor XT-8 Instrument
The eSensor XT-8 instrument was previously cleared for IVD use by the FDA under K073720 and K090901.
The eSensor XT-8 is a clinical multiplex instrument that has a modular design consisting of a base module and one, two, or three cartridge-processing towers containing 8, 16, or 24 cartridge slots, respectively. The cartridge slots operate independently of each other. Any number of cartridges can be loaded at one time, and the remaining slots are available for use while the instrument is running.
The base module controls each processing tower, provides power, and stores and analyzes data. The instrument is designed to be operated solely with the touch screen interface. Entering patient accession numbers and reagent lot numbers can be performed by the bar code scanner or the touch screen.
Each processing tower consists of eight cartridge modules, each containing a cartridge connector, a precision-controlled heater, an air pump, and electronics. The air pumps drive the pump and valve system in the cartridge, eliminating fluid contact between the instrument and the cartridge. The pneumatic pumping enables recirculation of the hybridization solution allowing the target DNA and the signal probes to hybridize with the complementary capture probes on the electrodes. The pump in the cartridge is connected to a pneumatic source from the eSensor XT-8 instrument and provides unidirectional pumping of the hybridization mixture through the channel
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during hybridization. Using this process to circulate the hybridization solution minimizes the unstirred boundary laver at the electrode surface and continuously replenishes the volume above the electrode that has been depleted of complementary targets and signal probes.
The XT-8 instrument provides electrochemical detection of bound signal probes by ACV and subsequent data analysis and test report generating functions. All hybridization, ACV scanning and analysis parameters are defined by a scanning protocol loaded into the XT-8 Software, and then specified for use by the EEPROM on each cartridge.
Principle of eSensor Technology: eSensor technology uses a solid-phase electrochemical method for determining the presence of one or more of a defined panel of virus target sequences. Purified DNA/RNA is isolated from the patient specimen according to defined laboratory procedures and the extracted nucleic acid is reverse transcribed and/or amplified using virus specific primers with an RT-PCR enzyme mix. The amplified DNA is converted to single-stranded DNA via exonuclease digestion and is then combined with a signal buffer containing ferrocenelabeled signal probes that are specific for the different viral targets. The mixture of amplified sample and signal buffer is loaded onto a cartridge containing single-stranded oligonucleotide capture probes bound to gold-plated electrodes. The cartridge is inserted into the XT-8 instrument where the single-stranded targets hybridize to the complementary sequences of the capture probes and signal probes, as shown in Figure 1. The presence of each target is determined by voltammetry, which generates specific electrical signals from the ferrocene-labeled signal probe.
The eSensor RVP provides a qualitative result based upon the presence (Positive) or absence (Target Not Detected) of the viruses contained in the panel along with the internal MS2 control. Positive and negative results are determined based on the electrical signals generated being either above or below specified signal boundaries, respectively.
Image /page/3/Picture/4 description: The image shows a schematic of a DNA biosensor. The biosensor consists of a gold electrode with a self-assembled monolayer on top. A capture probe is attached to the monolayer, which binds to the target DNA. A signal probe is then used to detect the presence of the target DNA. The 5' and 3' ends of the DNA strands are labeled.
Figure 1: Hybridization complex formed at the surface of each electrode. Different, target specific, capture probes are covalently attached to the gold electrodes in the eSensor microarray. The amplified viral target DNA hybridizes to the capture probe and to a complementary ferrocene label signal probe. The ferrocene label is detected at the electrode surface using voltammetry.
Substantial Equivalence Discussion: The eSensor Respiratory Viral Panel (RVP) uses the similar fundamental scientific technologies and has the same intended use as that of the predicate device, the Luminex® xTag® RVP and eSensor XT-8 Instrument. The eSensor XT-8 Instrument described in K078720 (eSensor Warfarin Sensitivity Test) is the identical instrument with a unique Assay Analysis Module (AAM) necessary to support the RVP IVD.
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| Element | Table 2: Substantial Equivalence Predicate Comparison: | |
|---|---|---|
| GenMark eSensor RVP | Luminex xTag RVP | |
| Subject Device | K081483 | |
| Intended Use | The eSensor® Respiratory Viral Panel (RVP) is a qualitative nucleic acid multiplex in vitro diagnostic test intended for use on the eSensor XT-8TM system for the simultaneous detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals exhibiting signs and symptoms of respiratory infection. | The xTAG RVP (Respiratory Viral Panel) is a qualitative nucleic acid multiplex test intended for the simultaneous detection and identification of multiple respiratory virus nucleic acids in nasopharyngeal swabs from individuals suspected of respiratory tract infections. |
| The following virus types and subtypes are identified using the eSensor RVP: Influenza A, Influenza A H1 Seasonal Subtype, Influenza A H3 Seasonal Subtype, Influenza A 2009 H1N1 subtype, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza Virus 3, Human Metapneumovirus, Human Rhinovirus, Adenovirus species B/E, and Adenovirus species C. | The following virus types and subtypes are identified using RVP: Influenza A, Influenza A subtype H1, Influenza A subtype H3, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza 1, Parainfluenza 2, and Parainfluenza 3 virus, Human Metapneumovirus, Rhinovirus, and Adenovirus. | |
| The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and epidemiological information. | The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and laboratory findings. It is recommended that specimens found to be negative after examination using RVP be confirmed by cell culture. Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other management decisions. | |
| Negative results do not preclude respiratory viral infection and should not be used as the | Positive results do not rule out bacterial infection or co-infection with other organisms. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g., bacterial and viral culture, immunofluorescence, and radiography) and clinical presentation must be taken into consideration in order to obtain the final | |
| Element | GenMark eSensor RVP | Luminex xTag RVP |
| Subject Device | K081483 | |
| sole basis for diagnosis, treatment or otherpatient management decisions. Positiveresults do not rule out bacterial infection, orco-infection with other viruses. The agentdetected may not be the definite cause ofdisease. The use of additional laboratorytesting (e.g. bacterial and viral culture,immunofluorescence and radiography) andclinical presentation must be taken intoconsideration in the final diagnosis ofrespiratory viral infection. | diagnosis of respiratory infection. | |
| Performance characteristics for Influenza Awere established during the 2010/2011influenza season when Influenza A 2009H1N1 and H3N2 were the predominantInfluenza A viruses in circulation. Whenother Influenza A viruses emerge,performance characteristics may vary. | Due to seasonal prevalence, performancecharacteristics for Influenza A/H1 were establishedprimarily with retrospective specimens. | |
| If infection with a novel Influenza A virus issuspected based on current clinical andepidemiological screening criteriarecommended by public health authorities,specimens should be collected withappropriate infection control precautions fornovel virulent influenza viruses and sent tostate or local health departments for testing.Viral culture should not be attempted inthese cases unless a BSL 3+ facility isavailable to receive and culture specimens. | The RVP assay cannot adequately detectAdenovirus species C, or serotypes 7a and 41.The RVP primers for detection of rhinovirus cross-react with enterovirus. A rhinovirus reactive resultshould be confirmed by an alternate method (e.g.cell culture). | |
| For prescription use only. | Performance characteristics for Influenza A Viruswere established when Influenza A/H3 and A/H1were the predominant Influenza A viruses incirculation. When other Influenza A viruses areemerging, performance characteristics may vary. Ifinfections with a novel Influenza A virus issuspected based on current clinical andepidemiological screening criteria recommended bypublic health authorities, specimens should becollected with appropriate infection controlprecautions for novel virulent Influenza viruses andsent to a state or local health department fortesting. Viral culture should not be attempted inthese cases unless a BSL 3+ facility is available toreceive and culture specimens. | |
| 6 | ||
| Element | GenMark eSensor RVP | Luminex xTag RVP |
| Subject Device | K081483 | |
| Organisms Detected | Influenza A, Influenza A H1 SeasonalSubtype, Influenza A H3 Seasonal Subtype,Influenza A 2009 H1N1 strain, Influenza B,Respiratory Syncytial Virus subtype A,Respiratory Syncytial Virus subtype B,Parainfluenza 1, Parainfluenza 2,Parainfluenza 3, Human Metapneumovirus,Human Rhinovirus, Adenovirus B/E andAdenovirus C | Influenza A, Influenza A subtype H1, Influenza Asubtype H3, Influenza B, Respiratory SyncytialVirus subtype A, Respiratory Syncytial Virussubtype B, Parainfluenza 1, Parainfluenza 2, andParainfluenza 3 virus, Human Metapneumovirus,Rhinovirus, and Adenovirus |
| Specimen type | Same | Nasopharyngeal swabs (NPS) |
| Sample preparation | Same | Up front sample processing is required to extractnucleic acid |
| Assay technology | Same | PCR-based system for detecting viral nucleic acidsin clinical specimens targeting unique regions ofvirus RNA/DNA |
| Detectiontechnology | Solid phase electrochemical | Spectrofluorometry |
| Instrument | 1. Same2. eSensor XT-8 | 1. EasyMag® extraction system2. Luminex® 100/200™ instrument |
| Software | Application software and embeddedfirmware (controls hardware functions) onXT-8 in addition to Assay Analysis Module(AAM) for RVP-IVD | IS or XPONENT software; xTAG Data AnalysisSoftware RVP (US) |
| Time to results | Approximately 6 hours | Approximately 8 hours |
| Results | Same | Qualitative |
| Test interpretation | Automated test interpretation and reportgeneration. User can access the raw signalsgenerated by the assay. | Semi-automated test interpretation. User mustreview all "no call" results to determine cause andretesting strategy. |
| Controls | Same | Internal control added to each sample. Externalcontrol processed with each batch of samples. |
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NON-CLINICAL PERFORMANCE DATA
Limit of Detection
Limit of Detection (LoD)
The Limit of Detection (LoD) was identified and verified for each viral target of the eSensor RVP using samples prepared from regrown and re-titered viral reference strains as detailed in Table 3. Initial estimations involved serially diluting each viral strain in M5 media. The dilutions prepared from each target were extracted in triplicate and the assay was performed once for each extract. Verification of the LoD was performed by meeting 95% detection or in at least 19 of the 20 extraction replicates on the selected dilution of each culture. Once the LoD was verified for each viral target in M5. verification of the LoD was also performed with the M4 media. Each viral target was diluted in M4 media down to the LoD concentration. The LoD dilution of each culture was extracted 20 times and the eSensor RVP assay was performed on each extract. The final results summary with the verified LoD concentration in TCID55/mL for both M5 and M4 media is shown in Table 3.
| Viral Target | Strain | StartingTCID50/mL | LoD SpikedConc.(TCID50/mL) | %Positive |
|---|---|---|---|---|
| Flu A | H1N1Brisbane/59/07 | 4.17 x 105 | 4.17 x 10-1 | 100% |
| Flu A H1 | H1N1Brisbane/59/07 | 4.17 x 105 | 4.17 x 10-1 | 97.5% |
| Flu A | H3N2 | 1.58 x 108 | 1.58 x 103 | 100% |
| Flu A H3 | H3N2 | 1.58 x 108 | 1.58 x 103 | 100% |
| Flu A 2009H1N1 | NY/2009 | 1.05 x 106 | 1.05 x 10-1 | 95% |
| Flu B | Florida/02/06 | 3.16 x 106 | 3.16 x 10-1 | 100% |
| hMPV | B2 | 4.17 x 105 | 4.17 x 100 | 100% |
| HRV | 3 | 1.58 x 104 | 1.58 x 10-3 | 97.5% |
| PIV1 | C35 | 2.81 x 104 | 2.81 x 10-2 | 100% |
| PIV2 | Greer | 2.81 x 106 | 2.81 x 100 | 100% |
| PIV3 | C 243 | 2.81 x 107 | 2.81 x 101 | 100% |
| RSV A | A2 | 2.81 x 105 | 2.81 x 100 | 97.5% |
| RSV B | 9320 | 1.58 x 105 | 1.58 x 100 | 100% |
| ADV B/E | Type 4 | 1.58 x 106 | 1.58 x 101 | 100% |
| ADV C | Type 1 | 8.89 x 107 | 8.89 x 101 | 100% |
Table 3: LoD Results Summary
Analytical Reactivity (Inclusivity)
Analytical Inclusivity Testing
The performance of the eSensor RVP with multiple viral target strains representing temporal and geographic diversity for each claimed viral target was evaluated. Each viral target strain was diluted in M5 transport media to a titer of 3X LoD for the corresponding viral target and extracted in triplicate using the bioMerieux NucliSENS easyMAG System. Following extraction, each
{8}------------------------------------------------
replicate was tested once using the eSensor RVP. In the case that a viral target strain is not detected at 3X LoD, 1000-fold serial dilutions were made from the viral stock and then each dilution was extracted in triplicate and tested using the eSensor RVP.
In cases where unexpected False Negative results were obtained, in silico analysis was performed. Table 4 shows the results.
| Target | Strain | ConcentrationDetected(TCID50/ml) | LoD MultipleDetected |
|---|---|---|---|
| Flu A H1 | A/NewCaledonia/20/1999 | 4.2 | 10x |
| A/Brisbane/59/07 | 1.26 | 3x | |
| FM/1/47H1 | 1.26 | 3x | |
| A/Denver/1/57 | 1.26 | 3x | |
| A/SolomonIslands/3/2006 | 1.26 | 3x | |
| A/Taiwan/42/06 | 1.26 | 3x | |
| A/NWS/33 | 1260 | Flu A- 3x;H1- 3000x* | |
| A/PR/8/34 | 1.26 | Flu A- 3x;H1- not detected* | |
| A/Mal/302/54 | 6372 | Flu A- 3xH1- 15172x* | |
| A/Fort Monmouth/1/1947(H1N1) | 5.5 | Flu A- 3xH1-13x* | |
| A/Aichi/2/68 H3N2 | 4743 | 3x | |
| Flu A H3 | A/Brisbane/10/07 | 4743 | 3x |
| A/Victoria/3/75 | 4743 | 3x | |
| A/Port Chalmers/1/73 | 4743 | 3x | |
| A/Wisconsin/67/05 | 4743 | 3x | |
| A/Hong Kong/8/68 | 4743 | 3x | |
| A/Perth/16/2009 | 4743 | 3x | |
| Alice (vaccine)A/England/42/72 | 4743 | 3x | |
| MRC-2 RecombinantStrain | 4743 | 3x | |
| A/Nanchang/933/95 | 4743 | 3x | |
| Flu A 2009H1N1 | A/NY/02/2009 | 0.3 | 3x |
| A/New Jersey/8/76 | 0.3 | 3x | |
| A/California/7/2009 | 0.3 | 3x |
| Table 4: Analytical Reactivity (Inclusivity) Results | ||||
|---|---|---|---|---|
| -- | -- | -- | ------------------------------------------------------ | -- |
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| Target | Strain | ConcentrationDetected(TCID50/ml) | LoD MultipleDetected |
|---|---|---|---|
| A/Swine NY/01/2009 | 0.3 | 3x | |
| A/Swine NY/03/2009 | 0.3 | 3x | |
| A/Mexico/4108/09 | 0.3 | 3x | |
| A/Virginia/ATCC1/2009 | 0.3 | 3x | |
| A/Virginia/ATCC2/2009 | 0.6 | Flu A- 3x2009 H1N1- 6x** | |
| A/Virginia/ATCC3/2009 | 2.7 | Flu A- 3x2009 H1N1-27x** | |
| A/Iowa/15/30 | 100 | Flu A- 3x;2009 H1N1-1000x** | |
| B/Florida/02/06(Yamagata) | 1 | 3x | |
| B/Malaysia/2506/04 | 1 | 3x | |
| Flu B(Victorialineage exceptwhere noted) | B/Lee/40 | 1 | 3x |
| B/Allen/45 | 1 | 3x | |
| B/GL/1739/54 | 1 | 3x | |
| B/Taiwan/2/62 | 1 | 3x | |
| B/Hong Kong/5/72 | 1 | 3x | |
| B/Maryland/1/59 | 1 | 3x | |
| RSV A | A2 | 8.4 | 3x |
| Long | 8.4 | 3x | |
| 9320 | 4.8 | 3x | |
| RSV B | WV/14617/85 | 4.8 | 3x |
| Wash/18537/62 | 4.8 | 3x | |
| PIV1 | C35 | 0.084 | 3x |
| Type 1 | 0.084 | 3x | |
| PIV2 | Greer | 8.4 | 3x |
| Type 2 | 8.4 | 3x | |
| PIV3 | C-243 | 84 | 3x |
| Type 3 | 84 | 3x | |
| hMPV | IA3-2002 G, A1 | 12.6 | 3x |
| IA14-2003 G, A2 | 12.6 | 3x | |
| Peru2-2002 G, B1 | 12.6 | 3x | |
| Target | Strain | ConcentrationDetected(TCID50/ml) | LoD MultipleDetected |
| 1A | 0.9 | 450x# | |
| A2 | 0.9 | 569x# | |
| A7 | 0.005 | 3x | |
| A16 | 0.005 | 3x | |
| HRV A | 18 | Detected## | N/A |
| A34 | 0.005 | 3x | |
| A57 | 0.005 | 3x | |
| A77 | 0.005 | 3x | |
| 277G | 0.2 | 100x# | |
| B3 | 0.1 | 80x | |
| B14 | 0.02 | 14x | |
| B17 | 0.4 | 253x | |
| HRV B | B42 | 0.005 | 3x |
| FO2-2547 | 0.2 | 89x# | |
| B83 | 0.2 | 127x | |
| 84 | Detected## | N/A | |
| HRV C | C$ | Detected## | N/A |
| Type 3 | 0.3 | 3x | |
| Type 7A | 0.3 | 3x | |
| ADV B | Type 11 (lot 306523) | 0.3 | 3x |
| De Wit Type 14 | 0.3 | 3x | |
| Ch.79 Type 16 | 0.3 | 3x | |
| Type 21 (lot 307610) | 0.3 | 3x | |
| Compton Type 34 | 0.3 | 3x | |
| Holden Type 35 | 0.3 | 3x | |
| Wan Type 50 | 0.3 | 3x | |
| Type 1 | 267 | 3x | |
| Type 2 | 533 | 6x | |
| ADV C | Type 5 | 533 | 6x |
| Type 6 | 533 | 6x | |
| ADV E | Type 4 | 47 | 3x |
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in silico analysis revealed little homology between the strain sequence and the H1
primer sequences. The degree of mis-match to the H1 subtype primer sequences
resulted subtyping result.
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- ** In silico analysis revealed little homology between the strain sequence and the 2009 H1N1 primer sequences. The degree of mis-match to the 2009 H1N1 subtype primer sequences resulted in decreased reactivity to these influenza strains for the 2009 H1N1 subtyping result.
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- HRV strain 3, used for LoD determination, had a TCIDs /ml of 0.0016. HRV strains 1A, FO2-2547, 277G were detected at a higher LoD multiple to the reference strain, respectively with their corresponding TCIDsoml values of 0.9, 0.2, and 0.2. In silico analysis revealed mis-matches between the capture probe sequence and the HRV strains (2, 3 and 1 mis-match(es) respectively).
** No concentration available since it was an extracted RNA sample. § Only one test done for HRV C due to limited sample availability
Supplemental Analytical Inclusivity Testing of Other Influenza Subtypes
Additional analytical inclusivity testing was carried out with either live isolates or purified genomic RNA of Influenza A strains.
| Subtype | Host | Strain | Testing Conc. | RVP Result |
|---|---|---|---|---|
| Flu A H1N2 | Human | A/NWS/34 (HA) x A/Rockefeller Institute/5/57 (NA),(H1N2), Reassortant NWS-F, RNA | 0.74 ng | Flu A H1 |
| Flu A H2N2 | Avian | A/Japan/305/57, RNA | 1.625 ng | Flu A |
| Flu A H5N3 | A/Korea/426/68 (HA, NA) x A/Puerto Rico/8/34, RNA | 3.12 ng | Flu A | |
| Flu A H5N3 | Avian | A/duck/Singapore/645/97, Wild Type | 1.26 TCID50/ml | Flu A |
| Flu A H10N7 | A/chicken/Germany/N/49 | 1.26 TCID50/ml | Flu A |
Table 5: Additional Analytical Reactivity (Inclusivity) Results
Simulated Reactivity Information for Influenza Strains of Human, Swine, and Avian Origin
For any strains that were not available for testing with the eSensor RVP, such as Flu A H5 and Flu A H7 strains in silico analysis was performed. The eSensor RVP primers for Flu A, Flu A H1, Flu A 2009 H1N1 and Flu A H3 were aligned to the GenBank® sequences of the reactivity strains. Exclusivity was predicted based on the number and location of mismatches between assay primers and available strain sequences.
Simulated reactivity of the eSensor RVP with influenza strains was generated using a bioinformatics approach. Assay primer sequences, signal probes and capture probes were aligned with GenBank sequences corresponding to the appropriate gene targets and reactivity were predicated based on the number and location of mismatches in the targeted region shown in Table 6.
| Table 6: Supplemental Reactivity of eSensor RVP Influenza A with |
|---|
| Human. Swine, and Avian Influenza Strains |
| Subtype | Host | Strain | GenBankID | SimulatedRVPReactivityResult |
|---|---|---|---|---|
| H2N2 | Human | A/Albany/20/1957(H2N2) | CY022014 | Flu A |
| A/chicken/New York/13828-3/1995(H2N2) | CY014822 | Flu A | ||
| Avian | A/Japan/305/1957(H2N2) | CY014977 | Flu A | |
| A/Korea/426/1968(H2N2) | CY031596 | Flu A | ||
| H4N6 | Avian | A/blue-winged teal/Minnesota/Sg-00043/2007(H4N6) | CY063978 | Flu A |
| H5N1 | A/peregrine falcon/Aomori/7/2011 | AB629716 | Flu A | |
| Subtype | Host | Strain | GenBankID | SimulatedRVPReactivityResult |
| H5N1 | Avian | A/chicken/West Bengal/239022/2010 | CY061305 | Flu A |
| A/chicken/West Bengal/193936/2009 | GU272009 | Flu A | ||
| A/chicken/Hunan/1/2009 | HM172150 | Flu A | ||
| A/chicken/Hunan/8/2008 | GU182162 | Flu A | ||
| A/chicken/West Bengal/106181/2008 | GU083632 | Flu A | ||
| A/chicken/Primorsky/85/2008 | FJ654298 | Flu A | ||
| A/chicken/West Bengal/82613/2008 | GU083648 | Flu A | ||
| A/duck/France/080036/2008 | CY046185 | Flu A | ||
| A/duck/Vietnam/G12/2008 | AB593450 | Flu A | ||
| A/chicken/Thailand/PC-340/2008 | EU620664 | Flu A | ||
| A/great egret/Hong Kong/807/2008 | CY036240 | Flu A | ||
| A/rook/Rostov-on-Don/26/2007(H5N1) | EU814504 | Flu A | ||
| A/turkey/VA/505477-18/2007(H5N1) | GU186510 | Flu A | ||
| A/chicken/Bangladesh/1151-10/2010(H5N1) | HQ156766 | Flu A | ||
| A/Bangladesh/3233/2011 | CY088772 | Flu A | ||
| Human | A/Cambodia/R0405050/2007(H5N1) | HQ200572 | Flu A | |
| A/Cambodia/S1211394/2008 | HQ200597 | Flu A | ||
| A/Hong Kong/486/97(H5N1) | AF255368 | Flu A | ||
| Swine | A/swine/East Java/UT6010/2007(H5N1) | HM440124 | Flu A | |
| H5N2 | A/duck/Pennsylvania/10218/1984(H5N2) | AB286120 | Flu A | |
| A/American black duck/Illinois/08OS2688/2008 | CY079453 | Flu A | ||
| A/American green-winged teal/California/HKWF609/2007 | CY033447 | Flu A | ||
| A/Canada goose/New York/475813-2/2007 | GQ923358 | Flu A | ||
| Avian | A/blue-winged teal/Saskatchewan/22542/2007 | CY047705 | Flu A | |
| A/chicken/Taiwan/A703-1/2008 | AB507267 | Flu A | ||
| A/duck/France/080032/2008 | CY046177 | Flu A | ||
| A/duck/New York/481172/2007 | GQ117202 | Flu A | ||
| A/gadwall/Altai/1202/2007 | CY049759 | Flu A | ||
| H5N3 | A/mallard/Louisiana/476670-4/2007 | GQ923390 | Flu A | |
| A/waterfowl/Colorado/476466-2/2007 | GQ923374 | Flu A | ||
| Avian | A/duck/Singapore/F119/3/1997(H5N3) | GU052803 | Flu A | |
| H6N1 | Avian | A/duck/PA/486/1969(H6N1) | EU743287 | Flu A |
| H6N2H7N2 | A/mallard/Czech Republic/15902-17K/2009(H6N2) | HQ244433 | Flu A | |
| Avian | A/chicken/Hebei/1/2002 | AY724263 | Flu A | |
| A/chicken/PA/149092-1/02 | AY241609 | Flu A | ||
| A/chicken/NJ/294508-12/2004 | EU743254 | Flu A | ||
| A/chicken/New York/23165-6/2005 | CY031077 | Flu A | ||
| Subtype | Host | Strain | GenBank ID | Simulated RVP Reactivity Result |
| A/muscovy duck/New York/87493-3/2005 | CY034791 | Flu A | ||
| A/mallard/Netherlands/29/2006 | CY043833 | Flu A | ||
| A/northern shoveler/California/JN1447/2007 | CY076873 | Flu A | ||
| H7N2 | Human | A/New York/107/2003(H7N2) | EU587373 | Flu A |
| H7N3 | A/Canada/rv504/2004(H7N3) | CY015007 | Flu A | |
| A/American green-winged teal/Mississippi/09OS046/2009 | CY079309 | Flu A | ||
| Avian | A/chicken/Germany/R28/03 | AJ619676 | Flu A | |
| A/chicken/Netherlands/1/03 | AY340091 | Flu A | ||
| H7N7 | A/mallard/California/HKWF1971/2007 | CY033383 | Flu A | |
| A/mallard/Korea/GH171/2007 | FJ959087 | Flu A | ||
| A/mute swan/Hungary/5973/2007 | GQ240816 | Flu A | ||
| A/northern shoveler/Mississippi/ 09OS643/2009 | CY079413 | Flu A | ||
| Human | A/Netherlands/219/03(H7N7) | AY340089 | ||
| H9N2 | A/Hong Kong/1073/99(H9N2) | AJ278647 | ||
| Avian | A/turkey/Wisconsin/1/1966(H9N2) | CY014664 | Flu A | |
| H11N9 | A/duck/Memphis/546/1974(H11N9) | GQ257441 | Flu A | |
| Swine | A/swine/Wisconsin/1/1971 (H1N1) | CY022414 | Flu A | |
| H1N1 | A/swine/Wisconsin/1/1971 (H1N1) | CY022417 | Flu A H1 | |
| A/California/UR06-0393/2007(H1N1) | CY026540 | Flu A | ||
| A/California/UR06-0393/2007(H1N1) | CY026539 | Flu A H1 | ||
| Human | A/New York/297/2003(H1N2) | CY002665 | Flu A | |
| H1N2 | A/New York/297/2003(H1N2) | CY002664 | Flu A H1 | |
| H1N1 (2009) | A/Aalborg/INS133/2009(H1N1) | CY063607 | Flu A | |
| A/Aalborg/INS133/2009(H1N1) | CY063606 | 2009 H1N1 | ||
| Swine | A/swine/Hong Kong/NS857/2001 (H1N2) | GQ229350 | Flu A | |
| H1N2 | A/swine/Hong Kong/NS857/2001 (H1N2) | GQ229348 | Flu A H1 | |
| A/swine/Sweden/1021/2009(H1N2) | GQ495135 | Flu A | ||
| A/swine/Sweden/1021/2009(H1N2) | GQ495132 | Flu A H1 | ||
| Avian | A/blue-winged teal/ALB/452/1983(H3N1) | CY004635 | Flu A | |
| H3N1 | A/blue-winged teal/ALB/452/1983(H3N1) | CY005940 | Flu A H3 | |
| H3N2 | A/swine/NY/A01104005/2011(H3N2)* | N/A* | Flu A | |
| Swine | A/swine/NY/A01104005/2011(H3N2)* | JN940422 | Flu A H3 | |
| A/Maine/06/2011(H3N2) | JN866181 | Flu A | ||
| A/Maine/06/2011(H3N2) | JN866186 | Flu A H3 | ||
| A/Indiana/08/2011(H3N2) | JN655558 | Flu A | ||
| A/Indiana/08/2011(H3N2) | JN638733 | Flu A H3 | ||
| CY044581 | Flu A | |||
| Subtype | Host | Strain | GenBank ID | Simulated RVP Reactivity Result |
| A/American black duck/North Carolina/675-075/2004(H3N2) | GU051136 | Flu A | ||
| GU051135 | Flu A H3 | |||
| H3N5 | A/mallard/Netherlands/2/1999(H3N5) | CY060264 | Flu A | |
| CY060261 | Flu A H3 | |||
| H3N6 | Avian | A/American black duck/New Brunswick/25182/2007(H3N6) | CY047697 | Flu A |
| CY047696 | Flu A H3 | |||
| H3N7 | A/northern shoveler/California/HKWF1367/2007(H3N7) | CY033375 | Flu A | |
| CY033372 | Flu A H3 | |||
| H3N8 | A/American black duck/Washington/699/1978(H3N8) | GU052300 | Flu A | |
| GU052299 | Flu A H3 |
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and the country of the country of the country
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- Influenza A H3N2v (swine-origin). No sequence available but literature from CDC states that strains the conserved Matrix Protein (14) sequence from 2009 H1N1. Therefore Flu A should also be able to be detected.
Reproducibility
Multisite Reproducibility
Multisite reproducibility of the eSensor RVP was performed to evaluate the major sources of variability, such as lot-to-lot, extraction, site/instrument-to-site/instrument, day-to-day and operator/run-to-operator/run. Reproducibility testing occurred at three sites, utilizing a panel of samples containing viral material from culture derived isolates in media, simulating NPS specimen. Each of the selected panel targets was prepared at concentrations representing the following three viral load levels: Moderate Positive (100% positive, 3x LoD), Low Positive (95% positive, 1x LoD), and Negative (100% negative). Each simulated sample was divided into aliquots, blinded, and stored frozen (-70 °C) prior to testing. Each site received three lots of RVP Cartridges/Reagents, a set of samples for two operators and one XT-8 instrument. All samples were independently extracted using the bioMérieux easyMAG extraction system. Every analyte at each concentration was tested a total of 108 times (two operators at three sites, each testing three replicates on six testing days). Each lot of RVP Cartridges/Reagents was used in 36 tests per analyte/concentration. Summary results for each tested analyte are summarized below.
| Flu AConcentration | Site | # Positive | # Negative | % Agreementwith ExpectedResults | 95% CI | Mean(nA) | Std Dev | % CV |
|---|---|---|---|---|---|---|---|---|
| MOD POS(3x LoD)1.3 TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 243.0 | 23.6 | 9.7 |
| Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 246.4 | 29.7 | 12.0 | |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 235.0 | 32.6 | 13.9 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 241.5 | 29.0 | 12.0 | |
| LOW POS(1x LoD)0.4 TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 248.3 | 28.6 | 11.5 |
| Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 244.7 | 26.4 | 10.8 | |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 232.8 | 23.2 | 10.0 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 242.0 | 26.7 | 11.1 |
Table 7: Summary of Influenza A Calls (H3N2)
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| Flu AConcentration | Site | # Positive | # Negative | % Agreementwith ExpectedResults | 95% CI | Mean(nA) | Std Dev | % CV |
|---|---|---|---|---|---|---|---|---|
| Negative | Site 1 | 3/288 | 285/288 | 99.0% | 97.0%-99.8% | 1.2 | 2.4 | N/A |
| Site 2 | 1/288 | 287/288 | 99.7% | 98.1%-100% | 1.0 | 2.2 | N/A | |
| Site 3 | 2/288 | 286/288 | 99.3% | 97.5%-99.9% | 1.0 | 0.9 | N/A | |
| All Sites | 6/864 | 858/864 | 99.3% | 98.5%-99.7% | 1.1 | 1.9 | N/A |
Table 8: Summary of Influenza A H3 Calls
| Flu A H3Concentration | Site | # Positive | # Negative | % Agreementwith ExpectedResults | 95% CI | Mean(nA) | Std Dev | % CV |
|---|---|---|---|---|---|---|---|---|
| MOD POS(3x LoD)$4.7 \times 10^3$TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 86.5 | 23.9 | 27.7 |
| Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 77.4 | 26.7 | 34.5 | |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 86.0 | 30.5 | 35.4 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 83.3 | 27.3 | 32.7 | |
| LOW POS(1x LoD),$1.6 \times 10^3$TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 81.5 | 26.1 | 32.0 |
| Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 68.2 | 29.6 | 43.4 | |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 84.9 | 21.3 | 25.1 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 78.2 | 26.6 | 34.1 | |
| Negative | Site 1 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.4 | 0.3 | N/A |
| Site 2 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.3 | 0.3 | N/A | |
| Site 3 | 1/288 | 287/288 | 99.7% | 98.1%-100% | 0.4 | 0.4 | N/A | |
| All Sites | 1/864 | 863/864 | 99.9% | 99.4%-100% | 0.4 | 0.4 | N/A |
Table 9: Summary of Adenovirus B/E Calls
| ADV BConcentration | Site | # Positive | # Negative | % Agreementwith ExpectedResults | 95% CI | Mean(nA) | Std Dev | % CV |
|---|---|---|---|---|---|---|---|---|
| Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 109.1 | 10.9 | 10.0 | |
| MOD POS(3x LoD)47.4 TCID50/ml | Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 102.6 | 11.5 | 11.2 |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 102.2 | 14.5 | 14.1 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 104.7 | 12.7 | 12.1 | |
| Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 92.7 | 11.4 | 12.3 | |
| LOW POS(1x LoD)15.8 TCID50/ml | Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 89.9 | 10.9 | 12.1 |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 84.5 | 16.9 | 20.0 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 89.1 | 13.7 | 15.3 | |
| Site 1 | 1/288 | 287/288 | 99.7% | 98.1%-100% | 1.6 | 6.0 | N/A | |
| Negative | Site 2 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 1.2 | 0.4 | N/A |
| Site 3 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 1.2 | 0.4 | N/A | |
| All Sites | 1/864 | 863/864 | 99.9% | 99.4%-100% | 1.3 | 3.5 | N/A |
.
:
.
.
.
{16}------------------------------------------------
| hMPVConcentration | Site | # Positive | # Negative | % Agreementwith ExpectedResults | 95% CI | Mean(nA) | Std Dev | % CV |
|---|---|---|---|---|---|---|---|---|
| MOD POS(3x LoD)13 TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 91.2 | 26.1 | 28.6 |
| MOD POS(3x LoD)13 TCID50/ml | Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 92.5 | 37.1 | 40.1 |
| MOD POS(3x LoD)13 TCID50/ml | Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 100.4 | 22.7 | 22.6 |
| MOD POS(3x LoD)13 TCID50/ml | All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 94.7 | 29.3 | 30.9 |
| LOW POS(1x LoD)4 TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 56.4 | 30.0 | 53.2 |
| LOW POS(1x LoD)4 TCID50/ml | Site 2 | 35/36 | 1/36 | 97.2% | 85.5%-99.9% | 51.0 | 31.2 | 61.2 |
| LOW POS(1x LoD)4 TCID50/ml | Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 63.8 | 28.1 | 44.0 |
| LOW POS(1x LoD)4 TCID50/ml | All Sites | 107/108 | 1/108 | 99.1% | 94.9%-100% | 57.1 | 30.0 | 52.5 |
| Negative | Site 1 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.1 | 0.0 | N/A |
| Negative | Site 2 | 8/288 | 280/288 | 97.2% | 94.6%-98.8% | 0.7 | 4.1 | N/A |
| Negative | Site 3 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.1 | 0.1 | N/A |
| Negative | All Sites | 8/864 | 856/864 | 99.1% | 98.2%-99.6% | 0.3 | 2.4 | N/A |
Table 10: Summary of hMPV Calls
Table 11: Summary of PIV 3 Calls
・
·
.
| PIV3Concentration | Site | # Positive | # Negative | % Agreementwith ExpectedResults | 95% CI | Mean(nA) | Std Dev | % CV |
|---|---|---|---|---|---|---|---|---|
| MOD POS(3x LoD)84 TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 178.1 | 27.4 | 15.4 |
| Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 193.8 | 29.8 | 15.4 | |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 160.8 | 27.4 | 17.0 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 177.6 | 31.1 | 17.5 | |
| LOW POS(1x LoD)28 TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 139.0 | 34.8 | 25.1 |
| Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 162.4 | 27.9 | 17.2 | |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 126.9 | 38.9 | 30.7 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 142.8 | 37.0 | 25.9 | |
| Negative | Site 1 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.2 | 0.1 | N/A |
| Site 2 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.2 | 0.1 | N/A | |
| Site 3 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.2 | 0.1 | N/A | |
| All Sites | 0/864 | 864/864 | 100.0% | 99.6%-100% | 0.2 | 0.1 | N/A |
Table 12: Summary of RSV A Calls
| RSV A Concentration | Site | # Positive | # Negative | % Agreementwith ExpectedResults | 95% CI | Mean(nA) | Std Dev | % CV |
|---|---|---|---|---|---|---|---|---|
| MOD POS(3x LoD)8.4 TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 166.3 | 19.2 | 11.5 |
| Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 156.7 | 31.7 | 20.2 | |
| Site 3 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 156.4 | 22.9 | 14.7 | |
| All Sites | 108/108 | 0/108 | 100.0% | 96.6%-100% | 159.8 | 25.3 | 15.8 | |
| LOW POS(1x LoD)2.8 TCID50/ml | Site 1 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 146.6 | 22.7 | 15.5 |
| Site 2 | 36/36 | 0/36 | 100.0% | 90.3%-100% | 124.6 | 41.0 | 32.9 | |
| Site 3 | 35/36 | 1/36 | 97.2% | 85.5%-99.9% | 128.2 | 33.4 | 26.1 | |
| All Sites | 107/108 | 1/108 | 99.1% | 94.9%-100% | 133.1 | 34.3 | 25.8 | |
| Negative | Site 1 | 4/288 | 284/288 | 98.6% | 96.5%-99.6% | 0.7 | 4.0 | N/A |
| Site 2 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.2 | 0.1 | N/A |
{17}------------------------------------------------
| RSV AConcentration | Site | # Positive | # Negative | % Agreementwith ExpectedResults | 95% CI | Mean(nA) | Std Dev | % CV |
|---|---|---|---|---|---|---|---|---|
| Site 3 | 0/288 | 288/288 | 100.0% | 98.7%-100% | 0.2 | 0.2 | N/A | |
| All Sites | 4/864 | 860/864 | 99.5% | 98.8%-99.9% | 0.4 | 2.3 | N/A |
Testing of Dual Infection Samples
Clinically Relevant Co-Infections
An internal co-infection study was performed to determine the capability of the eSensor RVP to detect clinically relevant dual co-infections in patient samples. Nine clinically relevant coinfections were evaluated in this study. Dual co-infections were prepared by using the representative viral cultures at two different concentrations - Virus A at 1x LoD and Virus B at 10,000x LoD, as well as Virus A at 10,000x LoD and Virus B at 1x LoD. Relevant medical literature was sourced for selection of viral mix composition of common or expected co-infections.
The table below summarizes the TCIDsoml and LoD multiple detected in each viral co-infection.
| Viral Co-Infection(Virus 1/Virus 2) | Virus 1 Detected | Virus 2 Detected | ||
|---|---|---|---|---|
| LoDMultiple | TCID50/ml | LoDMultiple | TCID50/ml | |
| H3-RSV | 1x LoD | $1.58 x 10^3$ | 10,000x LoD | $2.81 x 10^4$ |
| RSV-H3 | 3x LoD | $8.43 x 10^0$ | 10,000x LoD | $1.58 x 10^7$ |
| H3-FLUB | 1x LoD | $1.58 x 10^3$ | 10,000x LoD | $3.16 x 10^3$ |
| FLUB-H3 | 1x LoD | $3.16 x 10^{-1}$ | 10,000x LoD | $1.58 x 10^7$ |
| H1N1-HRV | 3x LoD | $3.15 x 10^{-1}$ | 10,000x LoD | $1.58 x 10^7$ |
| HRV-H1N1 | 1x LoD | $1.58 x 10^{-3}$ | 10,000x LoD | $1.05 x 10^3$ |
| H1N1-PIV3 | 1x LoD | $1.05 x 10^{-1}$ | 10,000x LoD | $2.81 x 10^5$ |
| PIV3-H1N1 | 1x LoD | $2.81 x 10^1$ | 10,000x LoD | $1.05 x 10^3$ |
| H1N1-RSV | 1x LoD | $1.05 x 10^{-1}$ | 10,000x LoD | $2.81 x 10^4$ |
| RSV-H1N1 | 3x LoD | $8.43 x 10^0$ | 10,000x LoD | $1.05 x 10^3$ |
| RSV-ADV | 1x LoD | $2.81 x 10^0$ | 10,000x LoD | $8.89 x 10^{-2}$ |
| ADV-RSV | 1x LoD | $8.89 x 10^{-2}$ | 10,000x LoD | $2.81 x 10^4$ |
| HMPV-RSV | 1x LoD | $4.17 x 10^0$ | 10,000x LoD | $2.81 x 10^4$ |
| RSV-HMPV | 1x LoD | $2.81 x 10^0$ | 10,000x LoD | $4.17 x 10^4$ |
| HMPV-ADV | 1x LoD | $4.17 x 10^0$ | 10,000x LoD | $8.89 x 10^{-2}$ |
| ADV-HMPV | 1x LoD | $8.89 x 10^{-2}$ | 10,000x LoD | $4.17 x 10^4$ |
| HRV-RSV | 3x LoD | $4.74 x 10^{-3}$ | 10,000x LoD | $2.81 x 10^4$ |
| RSV-HRV | 1x LoD | $2.81 x 10^0$ | 10,000x LoD | $1.58 x 10^7$ |
Table 13: Dual Infection Reproducibility Summary Results
{18}------------------------------------------------
Interference
Interfering Substances
Potentially interfering substances were selected based on the fact that they could pre-exist in the specimen (e.g. blood, nasal secretions or mucus, and throat medications used to relieve congestion, nasal dryness, irritation, or asthma and allergy symptoms) as well as those that could be introduced during specimen collection and preparation. Each potentially interfering substance was tested individually with the exception of Luffa opperculata. Galphimia glauca. Histaminum hydrochloricum, and Sulfur, which were tested together as Zicam® Allergy Relief Nasal spray and Oxymetazoline and Menthol, which were tested together as Afrin® No Drip Severe Congestion nasal spray, thereby bringing the total to 21 potentially interfering test combinations. Viral samples representative of the 14 viral targets on the eSensor RVP were obtained from commercially available cultured cell lines as indicated in Table 14. Seven viral mixes were made, each containing unique viral targets. Viral mixes were added to each potentially interfering substance resulting in a final testing concentration of 3X LoD for each analyte. Each was extracted in triplicate with each extract tested once with the eSensor RVP. Twenty-four (24) potentially interfering substances were tested in this study with 21 combinations. Additionally, nine potentially interfering microorganisms (viral and bacterial) were also tested in the same manner as described above. The microorganisms and their testing concentrations are listed in Table 14. All substances and microorganisms tested for interference were shown to be compatible with the eSensor RVP. No potentially interfering substance or microorganism was shown to inhibit the eSensor RVP at all tested concentrations .
| Potentially InterferingSubstance | ActiveIngredient | SubstanceForm | TestedConcentration |
|---|---|---|---|
| Sample Matrix | Control for no interfering substance | Liquid | N/A |
| Viral transport medium | Becton Dickinson VTM | Liquid | N/A |
| Blood (human) | Blood | Liquid | 2% v/v |
| Human gDNA | 50 ng/rxn | 50 ng/rxn | |
| Throat lozenges, oral anestheticand analgesic | Benzocaine | Dry | 30% w/v |
| Menthol* | Nasal Spray | 1% v/v | |
| Mucin: bovine submaxillary gland,type I-S | Purified mucin protein | Dry | 1% w/v |
| Phenylephrine (Neo-Synephrine) | Dry | 1.5% v/v | |
| Nasal spraysor drops | Oxymetazoline* (also contains BenzalkoniumChloride, Menthol, Eucalyptol, Camphor, benzylalcohol and phosphate buffers) | Nasal Spray | 1% v/v |
| Sodium chloride | Dry | 0.8% w/v | |
| Antibacterial, systemic | Tobramycin | Dry | 5% w/v |
| Antibiotic, nasal ointment | Mupirocin | Dry | 2% w/v |
| Beclomethasone | Dry | 1.5% w/v | |
| Dexamethasone | Dry | 1.5% w/v | |
| Nasal corticosteroids | Flunisolide | Dry | 1.5% w/v |
| Triamcinolone | Dry | 1.5% w/v | |
| Budesonide (Pulmicort) | Dry | 1.5% w/v | |
| Fluticasone (Flonase) | Dry | 3% w/v | |
| Nasal gel | Luffa opperculata** | Nasal Gel | 1% v/v |
| Sulfur** | Nasal Gel | 1% v/v |
Table 14: Potentially Interfering Substances
{19}------------------------------------------------
| Potentially InterferingSubstance | ActiveIngredient | SubstanceForm | TestedConcentration |
|---|---|---|---|
| Homeopathic allergy relief medicine | Galphimia glauca** | Nasal Gel | 1% v/v |
| Homeopathic allergy relief medicine | Histaminum hydrochloricum** | Nasal Gel | 1% v/v |
| FluMist | Live intranasal influenza virus vaccine" | Liquid | 0.5%-1% v/v |
| Anti-viral drugs | Zanamivir (Relenza®) | Dry | 550 ng/ml |
| Anti-viral drugs | Oseltamivir (Tamiflu") | Dry | 142 ng/ml |
| Virus | Cytomegalovirus | Culture | 1 x 105 PFU/ml |
| Virus | Enterovirus 71 | Culture | 1 x 105 PFU/ml |
| Bacteria | Streptococcus pneumoniae | Culture | |
| Bacteria | Bordetella pertussis | Culture | |
| Bacteria | Haemophilus influenza | Culture | |
| Bacteria | Mycoplasma pneumoniae | Culture | 1 x 106 CFU/ml |
| Bacteria | Staphylococcus aureus | Culture | |
| Bacteria | Neisseria meningitidis | Culture | |
| Bacteria | Corynebacterium diptheriae | Culture |
*Tested together (Afrin No Drip Severe Congestion nasal spray)
** Tested together (Zicam Allergy Relief)
- FluMist vaccine: Addition of FluMist Live Intranasal Influenza Vaccine to the transport media control resulted in positive calls for Flu A, Flu A 2009 H1N1 and Flu B. This was due to the live attenuated influenza virus present in the vaccine.
4 Testing of FluMist at 1% (v/v) resulting in an inhibition in the detection of hMPV . FluMist did not inhibit the detection of hMPV when tested at 0.5% (v/v).
Cross-Reactivity
Cross-Reactivity Evaluation for Viruses Detected by the eSensor RVP
Cross-reactivity of each viral target (14 viral targets) was evaluated at high concentrations with the eSensor RVP by making three serial dilutions of viral reference strains with viral transport media (Remel M5) at 10,000x, 1000x and 100x the LoD. The titer of each virus dilution and corresponding LoD values were determined and provided in the table below. Cross-reactivity was not observed with any of the RVP viral targets at the concentrations tested. Table 15 summarizes the cross-reactivity results.
| Viral Target | Strain | LoDConcentration(TCID50/mL) | Highest TestConcentration(TCID50/mL) | Highest Multipleof LoD Tested | Cross-ReactivityResults |
|---|---|---|---|---|---|
| Flu A | H1N1 Brisbane/59/07 | 4.17 x 10-1 | 4.17 x 103 | 10,000x | Not Observed |
| Flu A H1 | H1N1 Brisbane/59/07 | 4.17 x 10-1 | 4.17 x 103 | 10,000x | Not Observed |
| Flu A | H3N2 | 1.58 x 103 | 1.58 x 107 | 10,000x | Not Observed |
| Flu A H3 | H3N2 | 1.58 x 103 | 1.58 x 107 | 10,000x | Not Observed |
| Flu A 2009 H1N1 | NY/2009 | 1.05 x 10-1 | 1.05 x 103 | 10,000x | Not Observed |
| Flu B | Florida/02/06 | 3.16 x 10-1 | 3.16 x 103 | 10,000x | Not Observed |
| hMPV | B2 | 4.17 x 100 | 4.17 x 104 | 10,000x | Not Observed |
| HRV | 3 | 1.58 x 10-3 | 1.58 x 101 | 10,000x | Not Observed |
| PIV1 | C35 | 2.81 x 10-2 | 2.81 x 102 | 10,000x | Not Observed |
Table 15: Within Panel Cross-Reactivity Final Results
{20}------------------------------------------------
| Viral Target | Strain | LoDConcentration(TCID50/mL) | Highest TestConcentration(TCID5o/mL) | Highest Multipleof LoD Tested | Cross-ReactivityResults |
|---|---|---|---|---|---|
| PIV2 | Greer | 2.81 x 100 | 2.81 x 104 | 10,000x | Not Observed |
| PIV3 | C 243 | 2.81 x 101 | 2.81 x 105 | 10,000x | Not Observed |
| RSV A | A2 | 2.81 x 100 | 2.81 x 104 | 10,000x | Not Observed |
| RSV B | 9320 | 1.58 x 100 | 1.58 x 104 | 10,000x | Not Observed |
| ADV B/E | Type 7 | 8.89 x 10-2 | 1.58 x 105 | 10,000x | Not Observed |
| ADV B/E | Type 4 | 1.58 x 101 | |||
| ADV C | Type 1 | 8.89 x 101 | 8.89 x 105 | 10,000x | Not Observed |
Cross-Reactivity with Other Respiratory Viruses Not Targeted by the eSensor RVP Cross-reactivity with 5 respiratory viruses known to circulate with Jow frequency in the general population was assessed. All viral strains were diluted in M5 transport media to a titer of 100 PFU/mL and extracted using the bioMérieux easyMAG extraction method in triplicate. Following extraction, each replicate was tested once in the RVP assay.
Table 16: Cross-Reactivity Results of Rare Respiratory Virus
| Organism | Source | Test Concentrations | Cross-Reactivity Results |
|---|---|---|---|
| Parainfluenza Virus 4 | Zeptometrix | 2.92 x 105 PFU/mL | Not Observed |
| Coronavirus OC43* | Zeptometrix | 5.96 x 104 PFU/mL | Not Observed |
| Coronavirus 229E | Zeptometrix | 1.36 x 105 PFU/mL | Not Observed |
| Coronavirus NL63** | Zeptometrix | 9.89 x 104 PFU/mL | Not Observed |
| Coronavirus HKU1 | Clinical Isolate | N/A§ | Not Observed |
*OC43 had one replicate fail the IC control at high (10) concentration.
**NL63 was tested at the highest concentration available - 9.89 x 10° PFU/mL.
3 The Coronavirus HKU1 sample was a clinical isolate identified during the method comparison study. The method used was qualitative so no copy information was available.
Cross-Reactivity with 17 additional viruses that are not targets of the eSensor RVP were also assessed (Table 17.)_All viral strains were diluted in M5 transport media to a titer of 10° PFU/mL and extracted using the bioMérieux easyMAG extraction method in triplicate reactions.
| Table 17: Cross-Reactivity Results of with other Viruses | |||
|---|---|---|---|
| - A B - A - A - A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
| Organism | Source | Test Concentrations | Cross-ReactivityResults |
|---|---|---|---|
| Adenovirus 18 (A) | Zeptometrix VPL-030 | 2.37 x $10^{5}$ PFU/mL | Not Observed |
| Adenovirus 9 (D) | Zeptometrix VPL-030 | 4.63 x $10^{5}$ PFU/mL | ADV C False Positive* |
| Adenovirus 41 (F) | Zeptometrix VPL-030 | 8.05 x $10^{5}$ PFU/mL | ADV C False Positive* |
| Enterovirus 71 | Zeptometrix 0810047CF | 2.92 x $10^{5}$ PFU/mL | Not Observed |
| Coxsackievirus A10 | Zeptometrix 0810106CF | 1.72 x $10^{5}$ PFU/mL | Not Observed |
| Coxsackievirus A9 | Zeptometrix 0810017CF | 2.21 x $10^{5}$ PFU/mL | Not Observed |
| Echovirus E6 | Zeptometrix 0810076CF | 7.16 x $10^{5}$ PFU/mL | Not Observed |
| Coxsackievirus B2 | ATCC VR-29 | 6.22 x $10^{6}$ PFU/mL | Not Observed |
| Coxsackievirus B3 | Zeptometrix 0810074CF | 1.06 x $10^{5}$ PFU/mL | Not Observed |
| Coxsackievirus B4 | Zeptometrix 0810075CF | 8.04 x $10^{6}$ PFU/mL | 2/3 Not Observed1 HRV Positive** |
{21}------------------------------------------------
| Organism | Source | Test Concentrations | Cross-ReactivityResults |
|---|---|---|---|
| Coxsackievirus B5 | Zeptometrix 081019CF | 7.16 x $10^7$ PFU/mL | Not Observed |
| Echovirus 9 | Zeptometrix 081007CF | 1.41 x $10^5$ PFU/mL | Not Observed |
| Echovirus 25 | Zeptometrix VPL-030 | 1.93 x $10^5$ PFU/mL | Not Observed |
| Echovirus 30 | Zeptometrix 0810078CF | 9.89 x $10^4$ PFU/mL | Not Observed |
| Coxsackievirus A21 | Zeptometrix 0810018CF | 2.92 x $10^5$ PFU/mL | Not Observed |
| Coxsackievirus A24 | ATCC VR-583 | 7.00 x $10^5$ PFU/mL | Not Observed |
| Enterovirus 68 | ATCC VR-561 | 1.40 x $10^5$ PFU/mL | Not Observed |
| Poliovirus | ATCC VR-193 | 1.11 x $10^5$ PFU/mL, | HRV False Positive |
| Bocavirus | Clinical Isolate | N/A | Not Observed |
| Herpesvirus 1: Herpes Simplex | Zeptometrix 0810005CF | 1.01 x $10^5$ PFU/mL | Not Observed |
| Herpesvirus 3: Varicella Zoster | Zeptometrix 081 0026CF | 2.35 x $10^6$ copies/mL | Not Observed |
| Herpesvirus 4: Epstein Barr | Zeptometrix 0810008CF | 1.06 x $10^5$ PFU/mL | Not Observed |
| Herpesvirus 5: Cytomegalovirus | Zeptometrix 0810003CF | 6.68 x $10^5$ PFU/mL | Not Observed |
| Measles | Zeptometrix | 1.37 x $10^5$ PFU/mL | Not Observed |
| Mumps | Zeptometrix 0810079CF | 1.93 x $10^5$ PFU/mL | Not Observed |
*ADV C cross-reactive signal was also obtained from Adenovirus 9 (D) and Adenovirus 41 (F) when it was
diluted 1000 fold from the initial testing concentration. Due to the genetic similarity between Adenovirus C, D,
and F, the eSensor RVP cannot reliably differentiate them. A positive eSensor RVP Adenovirus species C result should be followed-up using an alternative method (e.g., sequence analysis) if definitive Adenovirus speciation
is needed.
One replicate of Coxsackievirus B4 at high concentration (8.04 x 10° PFU/mL ) generated a HRV positive result which was silghtly above the assay threshold. None of the other thirteen (13) enterovinus analytes tested at similar high concentrations generated a positive call for HRV.
5 Due to the genetic similarity between human rhinovirus and poliovirus, the eSensor RVP cannot reliably
differentiate them. If a polio infection is suspected, a positive eSensor RVP human rhinovirus (HRV) result
should be confirmed using an alternate method (e.g., cell culture).
Quantification of the viral RNA contained in the Herpesvirus-3 (Varicella Zoster Virus) sample was performed using realtime RT-PCR and provided in copies/mL
Cross-Reactivity with Bacteria and Fungus
Bacterial and fungal strains were tested for cross-reactivity with the eSensor RVP and were diluted in M5 transport media to a titer of 108 CFU/mL. These organisms were extracted in triplicate with the bioMérieux easyMAG system.
Following extraction, each replicate was tested once using the eSensor RVP as shown in Table 18.
| Organism | Source | Test Concentrations | Cross-Reactivity Results |
|---|---|---|---|
| Acinetobacter baumanii | Zeptometrix 0801597 | $5.2 x 10^8$ CFU/mL | Not Observed |
| Bordetella parapertussis | Zeptometrix 0801461 | $9.8 x 10^8$ CFU/mL | Not Observed |
| Bordetella pertussis | Zeptometrix 0801459 | $5.8 x 10^8$ CFU/mL | Not Observed |
| Burkholderia cepacia | Zeptometrix BacT-050 | $2.3 x 10^8$ CFU/mL | Not Observed |
| Candida albicans | Zeptometrix 0801504 | $1.0 x 10^8$ CFU/mL | Not Observed |
| Candida glabrata | Zeptometrix 0801535 | $9.73 x 10^8$ CFU/mL | Not Observed |
| Chlamydophila pneumoniae DNA | ABI 08-942-250 | $1.4 x 10^7$ copies/mL | Not Observed |
| Corynebacterium diphtheriae | Zeptometrix BacT-050 | $3.58 x 10^8$ CFU/mL | Not Observed |
Table 18: Cross-Reactivity Results of with Bacteria and Fungus
{22}------------------------------------------------
| Organism | Source | Test Concentrations | Cross-ReactivityResults |
|---|---|---|---|
| Escherichia coli | Zeptometrix 0801624 | 1.5 x 106 CFU/mL | Not Observed |
| Haemophilus influenzae | Zeptometrix 0801680 | 2.6 x 106 CFU/mL | Not Observed |
| Klebsiella pneumoniae | Zeptometrix 0801506 | 1.07 x 106 CFU/mL | Not Observed |
| Lactobacillus acidophilus | Zeptometrix 0801540 | 2.12 x 106 CFU/mL | Not Observed |
| Lactobacillus planarum | Zeptometrix 0801507 | 1.75 x 106 CFU/mL | Not Observed |
| Legionella pneumophila | Zeptometrix 0801645 | 2.6 x 106 CFU/mL | Not Observed |
| Moraxella catarrhalis | Zeptometrix 0801509 | 3.9 x 106 CFU/mL | Not Observed |
| Mycobacterium tuberculosis | Zeptometrix 0801660 | 2.2 x 106 CFU/mL | Not Observed |
| Mycoplasma pneumoniae | Zeptometrix 0801579 | 2.47 x 106 CCU/mL | Not Observed |
| Neisseria meningiditis | Zeptometrix 0801511 | 3.37 x 106 CFU/mL | Not Observed |
| Neisseria sicca | Zeptometrix 0801754 | 3.37 x 106 CFU/mL | Not Observed |
| Porphyromonas gingivalis | Zeptometrix BacT-050 | 3.55x106 CFU/mL | Not Observed |
| Proteus vulgaris | Zeptometrix BacT-050 | 1.0 x 106 CFU/mL | Not Observed |
| Pseudomonas aeruginosa | Zeptometrix 0801519 | 1.05 x 106 CFU/mL | Not Observed |
| Serratia marcescens | Zeptometrix 0801723 | 6.1 x 106 CFU/mL | Not Observed |
| Staphylococcus aureus (COL) | Zeptometrix 0801638 | 8.4 x 106 CFU/mL | Not Observed |
| Staphylococcus aureus (MSSA) | Zeptometrix 0801675 | 1.2 x 106 CFU/mL | Not Observed |
| Staphylococcus epidermidis (MSSE) | Zeptometrix 0801689 | 2.2 x 106 CFU/mL | Not Observed |
| Staphylococcus epidermidis (MRSE) | Zeptometrix 0801651 | 6.2 x 106 CFU/mL | Not Observed |
| Staphylococcus haemolyticus | Zeptometrix 0801591 | 2.16 x 106 CFU/mL | Not Observed |
| Streptococcus agalactiae | Zeptometrix 0801545 | 2.2 x 106 CFU/mL | Not Observed |
| Streptococcus dysgalactiae | Zeptometrix 0801516 | 6.46 x 106 CFU/mL | Not Observed |
| Streptococcus mitis | Zeptometrix 0801695 | 2.43 x 106 CFU/mL | Not Observed |
| Streptococcus pneumoniae | Zeptometrix 0801439 | 2.8 x 106 CFU/mL | Not Observed |
| Streptococcus pyrogenes | Zeptometrix 0801512 | 1.55 x 106 CFU/mL | Not Observed |
| Streptococcus salivarius | Zeptometrix BacT-050 | 6.53 x 106 CFU/mL | Not Observed |
Carryover/Cross-Contamination
The carryover/cross-contamination study challenged the extraction, RT-PCR, and detection portions of the assay within and between runs and operators tested over the course of five testing days. A representative strain of Parainfluenza Virus 3 was obtained as a commercially available cultured cell line. Positive Parainfluenza Virus 3 samples were prepared at a concentration of 1.00 x 10 TCIDgomL (3559x LoD) while negative samples were un-inoculated Remel M5 transport media. All samples were extracted using the bioMérieux easyMAG System. Five sets of alternating high concentration positive and negative samples were extracted and tested in a checkerboard pattern. Each set of samples contained 24 tests (12 positive and 12 negative). Total number of tests for the duration of the study was 120 samples (60 positive and 60 negative).
No carryover/cross-contamination was observed in the eSensor RVP, as 100% of the PIV 3 negative samples were reported as 'Target Not Detected'.
{23}------------------------------------------------
CLINICAL PERFORMANCE DATA
Clinical Performance
Expected Values
A prospective clinical study testing nasopharyngeal (NP) swab specimens was conducted during the 2010/11 influenza season at three North American clinical laboratories. The expected values of individual analytes based on eSensor RVP results in prospective samples are summarized in Tables 19 and 20. The expected values of mixed co-infections based on eSensor RVP results in prospective samples are summarized in Tables 21 and 22.
| Virus (Analyte) | Age 0-1(N = 270) | Age >1-5(N = 136) | Age >5-21(N = 127) | Age >21-65(N = 333) | Age >65(N = 171) | All Ages(N = 1037) |
|---|---|---|---|---|---|---|
| N (%) | N (%) | N (%) | N (%) | N (%) | N (%) | |
| Influenza A (Un-Subtypable) | 2 (0.7) | 0 (0.0) | 2 (1.6) | 5 (1.5) | 1 (0.6) | 10 (1.0) |
| Influenza A (Total) | 25 (9.3) | 22 (16.2) | 17 (13.4) | 84 (25.2) | 31 (18.1) | 179 (17.3) |
| Influenza A H3 | 12 (4.8) | 15 (11.0) | 7 (5.5) | 43 (12.9) | 22 (12.9) | 99 (9.5) |
| Influenza A 2009 H1N1 | 10 (3.7) | 8 (5.9) | 6 (4.7) | 33 (9.9) | 7 (4.1) | 64 (6.2) |
| Influenza B | 10 (3.7) | 17 (12.5) | 33 (26.0) | 15 (4.5) | 7 (4.1) | 82 (7.9) |
| Human Metapneumovirus | 18 (6.7) | 11 (8.1) | 3 (2.4) | 15 (4.5) | 10 (5.9) | 57 (5.5) |
| Human Rhinovirus | 82 (30.4) | 27 (19.9) | 21 (16.6) | 26 (7.8) | 11 (6.4) | 167 (16.1) |
| Parainfluenza Virus 1 | 3 (1.1) | 0 (0.0) | 1 (0.8) | 0 (0.0) | 1 (0.6) | 5 (0.5) |
| Parainfluenza Virus 2 | 1 (0.4) | 1 (0.7) | 0 (0.0) | 3 (0.9) | 2 (1.2) | 7 (0.7) |
| Parainfluenza Virus 3 | 43 (15.9) | 15 (11.0) | 5 (3.9) | 18 (5.4) | 5 (2.9) | 86 (8.3) |
| Respiratory Syncytial Virus A | 69 (25.6) | 21 (15.4) | 8 (6.3) | 11(3.3) | 10 (5.8) | 119 (11.4) |
| Respiratory Syncytial Virus B | 28 (10.4) | 17 (12.5) | 4 (3.2) | 14 (4.2) | 6 (3.5) | 69 (6.7) |
| Adenovirus B/E | 6 (2.2) | 8 (5.9) | 3 (1.6) | 5 (1.8) | 0 (0.0) | 22 (2.1) |
| Adenovirus C | 21 (7.7) | 4 (2.9) | 1 (0.8) | 9 (2.7) | 6 (3.5) | 41 (3.9) |
Table 19: Expected Value (As Determined by eSensor RVP) Summary by Age Group in the Prospective Clinical Evaluation
Table 20: Expected Value (As Determined by eSensor RVP) Summary by Site in the Prospective Clinical Evaluation
| Virus (Analyte) | Site 1(N = 245) | Site 2(N = 533) | Site 3(N = 259) | All Sites(N = 1037) |
|---|---|---|---|---|
| N (%) | N (%) | N (%) | N (%) | |
| Influenza A (Un-Subtypable) | 0 (0.0) | 8 (1.5) | 2 (0.8) | 10 (1.0) |
| Influenza A (Total) | 58 (23.7) | 89 (16.7) | 32 (12.4) | 179 (17.3) |
| Influenza A H3 | 32 (13.1) | 54 (10.1) | 13 (5.0) | 99 (9.5) |
{24}------------------------------------------------
| Virus (Analyte) | Site 1(N = 245) | Site 2(N = 533) | Site 3(N = 259) | All Sites(N = 1037) |
|---|---|---|---|---|
| N (%) | N (%) | N (%) | N (%) | |
| Influenza A 2009 H1N1 | 19 (7.8) | 28 (5.3) | 17 (6.6) | 64 (6.2) |
| Influenza B | 4 (1.6) | 59 (11.1) | 19 (7.3) | 82 (7.9) |
| Human Metapneumovirus | 23 (9.4) | 25 (4.7) | 9 (3.5) | 57 (5.5) |
| Human Rhinovirus | 44 (18.0) | 99 (18.6) | 24 (9.3) | 167 (16.1) |
| Parainfluenza Virus 1 | 0 (0.0) | 4 (0.8) | 1 (0.4) | 5 (0.5) |
| Parainfluenza Virus 2 | 1 (0.4) | 6 (1.1) | 0 (0.0) | 7 (0.7) |
| Parainfluenza Virus 3 | 3 (1.2) | 68 (12.8) | 15 (5.8) | 86 (8.3) |
| Respiratory Syncytial Virus A | 17 (6.9) | 85 (15.9) | 17 (6.6) | 119 (11.4) |
| Respiratory Syncytial Virus B | 15 (6.1) | 41 (7.7) | 13 (5.0) | 69 (6.7) |
| Adenovirus B/E | 0 (0.0) | 14 (2.6) | 8 (3.1) | 22 (2.1) |
| Adenovirus C | 16 (6.5) | 19 (3.6) | 6 (2.3) | 41 (3.9) |
| Table 21: Expected Value (Co-infections as Determined by eSensor RVP) Summary by Age | ||
|---|---|---|
| Group in the Prospective Clinical Evaluation |
and the comments of the comments of the comments of
| Co-Infection | Age 0-1(N = 270) | Age >1-5(N = 136) | Age >5-21(N = 127) | Age >21-65(N = 333) | Age >65(N = 171) | All Ages(N = 1037) |
|---|---|---|---|---|---|---|
| N | N | N | N | N | N (%) | |
| ADV B/E + Flu B | 0 | 0 | 0 | 2 | 0 | 2 (0.2) |
| ADV B/E + HRV | 0 | 2 | 0 | 0 | 0 | 2 (0.2) |
| ADV B/E + PIV3 | 3 | 0 | 0 | 0 | 0 | 3 (0.3) |
| ADV B/E + RSV A | 1 | 1 | 0 | 0 | 0 | 2 (0.2) |
| ADV B/E + RSV B | 0 | 1 | 0 | 0 | 0 | 1 (0.1) |
| ADV B/E + HMPV + HRV + RSV A + RSV B | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| ADV C + Flu B | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| ADV C + HMPV | 3 | 0 | 0 | 0 | 0 | 3 (0.3) |
| ADV C + HRV | 3 | 1 | 0 | 1 | 1 | 6 (0.6 |
| ADV C + PIV3 | 0 | 0 | 0 | 1 | 0 | 1 (0.1) |
| ADV C + RSV A | 2 | 2 | 0 | 0 | 0 | 4 (0.4) |
| ADV C + RSV B | 1 | 0 | 0 | 1 | 1 | 3 (0.3) |
| ADV C + HRV + PIV3 | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| ADV C + HRV + RSV A | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| Flu A + ADV B/E | 0 | 0 | 1 | 0 | 0 | 1 (0.1) |
| Flu A + ADV C | 1 | 1 | 0 | 2 | 2 | 6 (0.6) |
| Flu A + Flu B | 0 | 0 | 1 | 1 | 0 | 2 (0.2) |
| Flu A + HMPV | 0 | 0 | 0 | 1 | 1 | 2 (0.2) |
| Flu A + HRV | 3 | 0 | 0 | 0 | 1 | 4 (0.4) |
| Flu A + PIV2 | 0 | 0 | 0 | 0 | 1 | 1 (0.1) |
| Flu A + PIV3 | 2 | 0 | 0 | 0 | 0 | 2 (0.2) |
.
and the comments of the comments of the comments of
{25}------------------------------------------------
| Co-Infection | Age 0-1(N = 270) | Age >1-5(N = 136) | Age >5-21(N = 127) | Age >21-65(N = 333) | Age >65(N = 171) | All Ages(N = 1037) |
|---|---|---|---|---|---|---|
| N | N | N | N | N | N (%) | |
| Flu A + RSV A | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| Flu A + RSV B | 0 | 1 | 0 | 1 | 0 | 2 (0.2) |
| Flu A + HRV + PIV3 | 2 | 0 | 0 | 0 | 0 | 2 (0.2) |
| Flu A + RSV A + RSV B | 2 | 0 | 0 | 0 | 0 | 2 (0.2) |
| Flu A + ADV C + HRV + RSV A | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| Flu A + ADV C + HRV + PIV3 | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| Flu B + HRV | 1 | 0 | 1 | 1 | 1 | 4 (0.4) |
| Flu B + PIV3 | 0 | 2 | 0 | 0 | 1 | 3 (0.3) |
| Flu B + RSV A | 2 | 0 | 2 | 0 | 1 | 5 (0.5) |
| Flu B + RSV B | 0 | 1 | 0 | 0 | 0 | 1 (0.1) |
| Flu B + HRV + PIV2 | 0 | 1 | 0 | 0 | 0 | 1 (0.1) |
| Flu B + HRV + RSV A | 2 | 0 | 0 | 0 | 0 | 2 (0.2) |
| HMPV + HRV | 4 | 1 | 0 | 0 | 0 | 5 (0.5) |
| HMPV + PIV3 | 0 | 0 | 0 | 1 | 0 | 1 (0.1) |
| HMPV + RSV B | 0 | 0 | 0 | 1 | 0 | 1 (0.1) |
| HRV + PIV1 | 2 | 0 | 0 | 0 | 0 | 2 (0.2) |
| HRV + PIV2 | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| HRV + PIV3 | 9 | 0 | 1 | 1 | 0 | 11 (1.1) |
| HRV + RSV A | 11 | 3 | 1 | 1 | 0 | 16 (1.6) |
| HRV + RSV B | 6 | 2 | 0 | 0 | 0 | 8 (0.8) |
| HRV + PIV3 + RSV A | 1 | 0 | 0 | 0 | 0 | 1 (0.1) |
| HRV + PIV3 + RSV B | 0 | 1 | 0 | 0 | 0 | 1 (0.1) |
| PIV3 + RSV A | 1 | 3 | 0 | 2 | 0 | 6 (0.6) |
| PIV3 + RSV B | 0 | 0 | 0 | 1 | 0 | 1 (0.1) |
Table 22: Expected Value (Co-infections as Determined by eSensor RVP) Summary by Site in the Prospective Clinical Evaluation
| Co-Infection | Site 1(N = 245)N | Site 2(N = 533)N | Site 3(N = 259)N | All Sites(N = 1037)N (%) | |||||
|---|---|---|---|---|---|---|---|---|---|
| ADV B/E + Flu B | 0 | 0 | 2 | 2 (0.2) | |||||
| ADV B/E + HRV | 0 | 2 | 0 | 2 (0.2) | |||||
| ADV B/E + PIV3 | 0 | 2 | 1 | 3 (0.3) | |||||
| ADV B/E + RSV A | 0 | 1 | 1 | 2 (0.2) | |||||
| ADV B/E + RSV B | 0 | 1 | 0 | 1 (0.1) | |||||
| ADV B/E + HMPV + HRV + RSV A +RSV B | 0 | 0 | 1 | 1 (0.1) | |||||
| ADV C + Flu B | 0 | 1 | 0 | 1 (0.1) | |||||
| ADV C + HMPV | Co-Infection | 1 | Site 1(N = 245)N | 2 | Site 2(N = 533)N | 0 | Site 3(N = 259)N | 3 (0.3) | All Sites(N = 1037)N (%) |
| ADV C + HRV | 2 | 3 | 1 | 6 (0.6) | |||||
| ADV C + PIV3 | 0 | 1 | 0 | 1 (0.1) | |||||
| ADV C + RSV A | 1 | 3 | 0 | 4 (0.4) | |||||
| ADV C + RSV B | 3 | 0 | 0 | 3 (0.3) | |||||
| ADV C + HRV + PIV3 | 0 | 1 | 0 | 1 (0.1) | |||||
| ADV C + HRV + RSV A | 0 | 1 | 0 | 1 (0.1) | |||||
| Flu A + ADV B/E | 0 | 1 | 0 | 1 (0.1) | |||||
| Flu A + ADV C | 3 | 2 | 1 | 6 (0.6) | |||||
| Flu A + Flu B | 0 | 1 | 1 | 2 (0.2) | |||||
| Flu A + HMPV | 1 | 0 | 1 | 2 (0.2) | |||||
| Flu A + HRV | 2 | 2 | 0 | 4 (0.4) | |||||
| Flu A + PIV2 | 1 | 0 | 0 | 1 (0.1) | |||||
| Flu A + PIV3 | 0 | 2 | 0 | 2 (0.2) | |||||
| Flu A + RSV A | 0 | 1 | 0 | 1 (0.1) | |||||
| Flu A + RSV B | 0 | 1 | 1 | 2 (0.2) | |||||
| Flu A + HRV + PIV3 | 0 | 2 | 0 | 2 (0.2) | |||||
| Flu A + RSV A + RSV B | 0 | 2 | 0 | 2 (0.2) | |||||
| Flu A + ADV C + HRV + RSV A | 0 | 1 | 0 | 1 (0.1) | |||||
| Flu A + ADV C + HRV + PIV3 | 0 | 1 | 0 | 1 (0.1) | |||||
| Flu B + HRV | 1 | 3 | 0 | 4 (0.4) | |||||
| Flu B + PIV3 | 0 | 2 | 1 | 3 (0.3) | |||||
| Flu B + RSV A | 0 | 2 | 3 | 5 (0.5) | |||||
| Flu B + RSV B | 0 | 1 | 0 | 1 (0.1) | |||||
| Flu B + HRV + PIV2 | 0 | 1 | 0 | 1 (0.1) | |||||
| Flu B + HRV + RSV A | 0 | 2 | 0 | 2 (0.2) | |||||
| HMPV + HRV | 2 | 2 | 1 | 5 (0.5) | |||||
| HMPV + PIV3 | 0 | 0 | 1 | 1 (0.1) | |||||
| HMPV + RSV B | 1 | 0 | 0 | 1 (0.1) | |||||
| HRV + PIV1 | 0 | 2 | 0 | 2 (0.2) | |||||
| HRV + PIV2 | 0 | 1 | 0 | 1 (0.1) | |||||
| HRV + PIV3 | 0 | 11 | 0 | 11 (1.1) | |||||
| HRV + RSV A | 3 | 12 | 1 | 16 (1.6) | |||||
| HRV + RSV B | 1 | 6 | 1 | 8 (0.8) | |||||
| HRV + PIV3 + RSV A | 0 | 1 | 0 | 1 (0.1) | |||||
| HRV + PIV3 + RSV B | 0 | 1 | 0 | 1 (0.1) | |||||
| PIV3 + RSV A | 2 | 4 | 0 | 6 (0.6) | |||||
| PIV3 + RSV B | 0 | 0 | 1 | 1 (0.1) |
.
.
r ·
{26}------------------------------------------------
.
:
27
{27}------------------------------------------------
Prospective Clinical Study
All clinical specimens in the prospective clinical study were nasopharyngeal (NP) swab specimens, prospectively collected and tested during the 2010/11 influenza season at three North American clinical laboratories. Clinical laboratories were located in Cleveland. Ohio: Providence, RI; and Albuquerque, NM. Demographic details for patient population are summarized in Table 23. Study sites enrolled subjects from diverse demographic groups; about 40% of the specimens were obtained from patients enrolled at a hospital. The remaining specimens were collected from outpatients and patients in an emergency department. A total of 1182 patient samples were collected prospectively across the three clinical sites from January 2011. Out of these patient samples, 1037 were evaluable. A total of 145 samples were excluded for the following reasons: samples not tested within 5 days of specimen collection (72/145), operator and/or easyMAG mechanical errors (62/145), samples not retested (11/145). Out of the 1037 samples collected, an even split of patients were male and female. Approximately one quarter of the samples came from children under the age of 1, and patients aged 21-65 contributed the largest share of the samples.
| Demographic | Site 1N = 245 (%) | Site 2N = 533 (%) | Site 3N = 259 (%) | All SitesN = 1037 (%) |
|---|---|---|---|---|
| SEX | ||||
| Male | 105 (42.9) | 296 (55.5) | 117 (45.2) | 518 (50.0) |
| Female | 140 (57.1) | 237 (44.5) | 142 (54.8) | 519 (50.0) |
| AGE (yrs) | ||||
| 0 - 1 | 46 (18.8) | 197 (37.0) | 27 (10.4) | 270 (26.0) |
| > 1 - 5 | 20 (8.2) | 94 (17.6) | 22 (8.4) | 136 (13.1) |
| > 5 - 21 | 19 (7.8) | 82 (15.4) | 26 (10.0) | 127 (12.2) |
| > 21 - 65 | 97 (39.6) | 106 (19.9) | 130 (50.2) | 333 (32.1) |
| > 65 | 63 (25.7) | 54 (10.1) | 54 (20.8) | 171 (16.5) |
| SUBJECT STATUS | ||||
| Outpatient | 7 (2.9) | 219 (41.1) | 90 (34.7) | 316 (30.5) |
| Hospitalized | 131 (53.5) | 162 (30.4) | 114 (44.0) | 407 (39.2) |
| Emergency Department | 107 (43.7) | 152 (28.5) | 55 (21.2) | 314 (30.3) |
Table 23: General Demographic Data for Prospectively Collected Specimens (N=1037)
A total of 1037 specimens were evaluated for all 14 RVP panel viruses with the prospectively collected samples, the performance for each respiratory virus was described by the clinical sensitivity and specificity. Sensitivity for a respiratory virus is the ability of the test to obtain positive results for this respiratory virus in the samples with positive results obtained by the comparator method for the particular virus. Specificity for a respiratory virus is the ability of the test to obtain negative results for this respiratory virus in the samples with negative results obtained by the comparator method for this respiratory virus. Depending on the comparator method used for a particular virus, performance is described as sensitivity/specificity or Positive Percent Agreement (PPA)/Negative Percent Agreement (NPA).
{28}------------------------------------------------
The performance of the RVP assay was compared to the established gold standard reference method of viral culture for most viral targets. For respiratory viruses in which culture was not available, a composite (multi-lest) reference method (a predetermined algorithm that combined the results of a few tests) was used as the comparator method. As seen in Table 24, viral culture followed by DFA identification testing was used as the comparator method for Influenza A, Influenza B, RSV, Parainfluenza Viruses (PIV1, PIV2, PIV3), and adenovirus. Since viral culture cannot determine the subtype for influenza A. RSVs, and adenoviruses, these viruses were subtyped by an independently developed qRT-PCR assay or qPCR assay followed by bidirectional sequencing to determine the subtypes (Influenza A H3, Influenza A 2009 H1N1, RSVA, RSVB, ADVB/E and ADVC). HRV and HMPV were evaluated using two independently developed and validated gRT-PCR assays followed by bidirectional sequencing.
| Virus (Analyte) | Comparator Method | Subtyping |
|---|---|---|
| Influenza A | ||
| Influenza A H1 | ||
| Influenza A H3 | ||
| Influenza A 2009 H1N1 | ||
| RSV A | Viral culture followed by DFA identification1 | qRT-PCR + BidirectionalSequencing |
| RSV B | ||
| Adenovirus B/E | ||
| Adenovirus C | ||
| Influenza B | ||
| PIV 1 | Viral culture followed by DFA identification2 | N/A |
| PIV 2 | ||
| PIV 3 | ||
| Human Metapneumovirus | 2 qRT-PCR (2 methods) with BidirectionalSequencing3 | N/A |
| Human Rhinovirus |
Validated Performance of the eSensor RVP assay detecting Influenza A, RSV or ADV respectively was
Table 24: Comparator Methods used to assess RVP performance
compared to viral culture followed by fluorescent antibody identification. "True" Influenza A, RSV or ADV positives respectively, were considered as any sample that tested positive for Influenza A, RSV or ADV respectively, by viral culture followed by DFA testing. True positive samples were subtyped using one analytically validated gRT-PCR assay with bi-directional sequence confirmation. The comparator assays were designed to amplify a different sequence from that amplified by the eSensor RVP assay(s). None of the comparator PCR assays overlapped any RVP amplicon sequence even if the same gene was targeted. "True" Influenza A H1, H3, or 2009 H1N1 positives, respectively, were considered as any sample that tested positive for Influenza A by viral culture, and had bi-directional sequencing pre-defined quality acceptance criteria that matched Influenza A/H1, A/H3, or A/2009 H1 sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih.gov), respectively, with acceptable Evalues. "True" RSV A or RSV B positively, were considered as any sample that tested positive for Influenza A by viral culture, and had bi-directional sequencing data meeting pre-defined quality acceptance criteria that matched RSV A or RSV B sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih.gov), respectively, with acceptable E-values. "True" ADV C or ADV B/E positives, respectively, were considered as any sample that tested positive for Influenza A by viral culture, and had bi-directional sequencing data meeting pre-defined quality acceptance criteria that matched ADV C or ADV B/E sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih.gov), respectively, with acceptable E-values. Performance of the eSensor RVP assay detecting Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2 and Parainfluenza Virus 3 respectively was compared to viral culture followed by fluorescent antibody identification. "True" Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2 or Parainfluenza Virus 3 positives, respectively, were considered as any sample that tested positive for Influenza Virus
- Parainfluenza Virus 2, or Parainfluenza Virus 3. respectively, by viral culture followed by DFA testing. 3 Performance of the eSensor RVP assay detecting Human Rhinovirus or Human Metapneumovirus, respectively, was compared to a predetermined algorithm that used composite comparator methods. The methods consist of two analytically validated PCR assays followed by bi-directional sequencing. "True" Human
{29}------------------------------------------------
Rhinovirus or Human Metapneumovirus positively, were considered as any sample that had bidirectional sequencing data meeting pre-defined quality acceptance criteria that matched Human Rhinovirus or Human Metapneumovirus sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih. gov), respectively, with acceptable E-values.
Sensitivity or positive percent agreement (PPA) was calculated by dividing the number of true positive (TP) results by the sum of true positive and false negative (FN) results, while specificity or negative percent agreement (NPV) was calculated by dividing the number of true negative (TN) results by the sum of true negative and false positive (FP) results. A TP result was one where the positive RVP result matched the positive reference/comparator result, while a TN result was one whereby a negative RVP result matched a negative reference/comparator result. The two-sided 95% confidence interval was also calculated. The results are summarized below.
| Virus (Analyte) | TP/(TP+FN) | Sensitivity | Specificity | ||||
|---|---|---|---|---|---|---|---|
| Percent | 95% CI | TN/(TN+FP) | Percent | 95% CI | |||
| Influenza A¹ | 132/137ª | 96.4% | 91.7% - 98.8% | 850/897ᵇ | 94.8% | 93.1% - 96.1% | |
| Influenza A H1* | 0/0 | NA | NA | 1027/1027 | 100.0% | 99.6% - 100.0% | |
| Influenza A H3 | 74/74 | 100.0% | 95.1% - 100.0% | 927/952ᶜ | 97.4% | 96.2% - 98.3% | |
| Influenza A 2009 H1N1 | 49/49 | 100.0% | 92.7% - 100.0% | 956/971ᵈ | 98.5% | 97.5% - 99.1% | |
| Influenza B | 64/69ᵉ | 92.8% | 83.9% - 97.6% | 947/965ᶠ | 98.1% | 97.1% - 98.9% | |
| Parainfluenza Virus 1* | 4/4 | 100.0% | 39.8% - 100.0% | 1029/1030ʲ | 99.9% | 99.5% - 100.0% | |
| Parainfluenza Virus 2* | 5/6ⁱ | 83.3% | 35.9% - 99.6% | 1026/1028ᵏ | 99.8% | 99.3% - 100.0% | |
| Parainfluenza Virus 3 | 64/68ˡ | 94.1% | 85.6% - 98.4% | 944/966ᵐ | 97.7% | 96.6% - 98.6% | |
| Respiratory Syncytial Virus A | 68/68 | 100.0% | 94.7% - 100.0% | 905/956ⁿ | 94.7% | 93.1% - 96.0% | |
| Respiratory Syncytial Virus B | 28/28 | 100.0% | 87.7% - 100.0% | 955/996ᵒ | 95.9% | 94.5% - 97.0% | |
| Adenovirus B/E* | 13/13 | 100.0% | 75.3% - 100.0% | 1012/1021ᵖ | 99.1% | 98.3% - 99.5% | |
| Adenovirus C* | 6/6 | 100.0% | 54.1% - 100.0% | 993/1028q | 96.6% | 95.3% - 97.5% | |
| Virus (Analyte) | TP/(TP+FN) | PPA | NPA | ||||
| Percent | 95% CI | TN/(TN+FP) | Percent | 95% CI | |||
| Human Metapneumovirus | 55/55 | 100.0% | 93.5% - 100.0% | 979/981ʳ | 99.8% | 99.3% - 100.0% | |
| Human Rhinovirus | 132/148 | 89.2% | 83.0% - 93.7% | 853/888ˢ | 96.1% | 94.6% - 97.3% |
Table 25: Performance in Prospective Clinical Specimens (N=1037)
*These viral targets were supplemented with retrospective samples as shown below.
1 Influenza A results contain 14 Flu A samples without a positive subtype and 123 samples with either Influenza A H3 or 2009 H1N1 positive results.
4 Flu A was not detected in all 5 RVP False Negative samples using independently developed and validated aPCR assays.
b Flu A viruses were confirmed positive in 35/47 RVP False Positive samples using bidirectional sequencing.
° Flu A H3 viruses were confirmed positive in 22/25 RVP False Positive samples using bidirectional sequencing.
9 Flu A 2009 H1N1 viruses were confirmed positive in 14/15 RVP False Positive samples using bidirectional sequencing.
8 Flu B was not detected in 4/5 RVP False Negative samples using bidirectional sequencing.
' Flu B was confirmed positive in 11/18 RVP False Positive samples using bidirectional sequencing.
0 hMPV was confirmed positive in 1/2 RVP False Positive samples using bidirectional sequencing.
" HRV was confirmed positive in 7/35 RVP False Positive samples using bidirectional sequencing.
| PIV 1 was not detected in this RVP False Positive sample by bidirectional sequencing.
PIV 2 was not detected in this RVP False Negative sample using independently developed and validated gPCR assays.
{30}------------------------------------------------
- PIV 2 virus was confirmed positive in 0/2 RVP False Positive samples by bidirectional sequencing. ' PIV 3 was not detected in 4/4 RVP False Negative samples using independently developed and validated
- qPCR assays.
™ PIV 3 virus was confirmed positive in 10/22 RVP False Positive samples using bidirectional sequencing.
" RSV A were confirmed positive in 43/51 RVP False Positive samples using bidirectional sequencing.
° RSV B was confirmed positive in 35/41 RVP False Positive samples using bidirectional sequencing.
º ADV B/E was confirmed positive in 8/9 RVP False Positive samples using bidirectional sequencing.
9 ADV C was confirmed positive in 16/35 False Positive samples using bidirectional sequencing.
The eSensor RVP system detected a total of 128 mixed infections in the prospective clinical evaluation (1037 tested and analyzed specimens). This represents 18.4% of the total positive specimens (128/696). One hundred fourteen (114/128; 89.1%) were double infections, eleven (11/128, 8.6%) were triple infections, and three (3/128; 2.3%) samples with four or more RVP analytes were identified. Ninety five of the 128 samples contained one or more analytes that the reference/comparator method failed to detect.
| Analyte1 | Analyte2 | Analyte3 | Analyte4 | Analyte5 | Total NumberofCo-infections | Number ofDiscrepantCo-infections | DiscrepantAnalyte(s) |
|---|---|---|---|---|---|---|---|
| ADV B/E | Flu B | 2 | 2 | ADV B (2), Flu B (1) | |||
| ADV B/E | HRV | 2 | 0 | ||||
| ADV B/E | PIV3 | 3 | 3 | ADV B (3) | |||
| ADV B/E | RSV A | 2 | 2 | ADV B (1), RSV A (2) | |||
| ADV B/E | RSV B | 1 | 1 | RSV B (1) | |||
| ADV B/E | HMPV | HRV | RSV A | RSV B | 1 | 1 | RSV A (1), RSV B (1) |
| ADV C | Flu B | 1 | 1 | ADV C (1) | |||
| ADV C | HMPV | 3 | 3 | ADV C (3) | |||
| ADV C | HRV | 6 | 4 | ADV C (4), HRV (1) | |||
| ADV C | PIV3 | 1 | 1 | ADV C (1) | |||
| ADV C | RSV A | 4 | 4 | ADV C (3), RSV A (2)' | |||
| ADV C | RSV B | 3 | 3 | ADV C (3), RSV B (2) | |||
| ADV C | HRV | PIV3 | 1 | 1 | ADV C (1) | ||
| ADV C | HRV | RSV A | 1 | 0 | |||
| Flu A | ADV B/E | 1 | 1 | Flu A | |||
| Flu A | ADV C | 6 | 6 | ADV C (6) | |||
| Flu A | Flu B | 2 | 2 | Flu A (2), HRV (1) | |||
| Flu A | HMPV | 2 | 2 | H1N1 (1), H3 (1), HMPV (1) . | |||
| Flu A | HRV | 4 | 2 | H1N1 (1), HRV (2) | |||
| Flu A | PIV2 | 1 | 1 | PIV2 (1) | |||
| Flu A | PIV3 | 2 | 2 | Flu A (1), PIV3 (2) | |||
| Flu A | RSV A | 1 | 1 | RSV A (1) | |||
| Distinct Co-infection Combinations Detectedby eSensor RVP | Total NumberofCo-infections | Number ofDiscrepantCo-infections | DiscrepantAnalyte(s) | ||||
| Analyte1 | Analyte2 | Analyte3 | Analyte4 | Analyte5 | |||
| Flu A | RSV B | 2 | 2 | RSV B (2) | |||
| Flu A | HRV | PIV3 | 2 | 1 | H1N1 (1) | ||
| Flu A | RSV A | RSV B | 2 | 2 | RSV A (2), RSV B (2) | ||
| Flu A | ADV C | HRV | RSV A | 1 | 1 | ADV C (1), HRV (1) | |
| Flu A | ADV C | HRV | PIV3 | 1 | 1 | ADV C (1), Flu A (1), PIV3 (1) | |
| Flu B | HRV | 4 | 2 | Flu B (1), HRV (1) | |||
| Flu B | PIV3 | 3 | 3 | Flu B (2), PIV3 (2) | |||
| Flu B | RSV A | 5 | 5 | Flu B (2), RSV A (5) | |||
| Flu B | RSV B | 1 | 1 | RSV B (1) | |||
| Flu B | HRV | PIV2 | 1 | 1 | HRV (1), PIV2 (1) | ||
| Flu B | HRV | RSV A | 2 | 1 | RSV A (1) | ||
| HMPV | HRV | 5 | 1 | HMPV (1) | |||
| HMPV | PIV3 | 1 | 0 | ||||
| HMPV | RSV B | 1 | 1 | RSV B (1) | |||
| HRV | PIV1 | 2 | 1 | PIV1 (1) | |||
| HRV | PIV2 | 1 | 1 | HRV (1) | |||
| HRV | PIV3 | 11 | 4 | HRV (4), PIV3 (2) | |||
| HRV | RSV A | 16 | 9 | HRV (5), RSV A (6) | |||
| HRV | RSV B | 8 | 6 | HRV (1), RSV B (5) | |||
| HRV | PIV3 | RSV A | 1 | 1 | RSV A (1) | ||
| HRV | PIV3 | RSV B | 1 | 1 | RSV B (1) | ||
| PIV3 | RSV A | 6 | 6 | PIV3 (4), RSV A (5) | |||
| PIV3 | RSV B | 1 | 1 | PIV3 (1), RSV B (1) | |||
| Total Number of Co-infections | 128 | 95 | 117/278 | ||||
| Total Number of Double Infections | 114 | 85 | 99/232 | ||||
| Total Number of Triple Infections | 11 | 8 | 11/33 | ||||
| Total Number of Quadruple Infections | 2 | 2 | 5/8 | ||||
| Total Number of Quintuple Infections | 1 | 1 | 2/5 |
Table 26: Distinct Co-infection Combinations Detected by the eSensor RVP Assay in the Prospective Clinical Trial
31
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*A discrepant co-infection or discrepant analyte was defined as one that was detected by RVP but not the reference/comparator methods.
'117/117 discrepant analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 58/117 cases.
16/6 discrepant ADV B/E analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 5/6 cases
°24/24 discrepant ADV C analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 11/24 cases
for discrepant Flu B analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 3/6 cases
4/4 discrepant Flu A 2009 H1N1 analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 4/4 cases
{32}------------------------------------------------
° // discrepant Flu A H3 analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 1/1 cases
'2/2 discrepant HMPV analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 1/2 cases
919/19 discrepant HRV analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 3/19 cases
"12/12 discrepant PIV3 analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 3/12 cases
'27/27 discrepant RSV A analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 17/27 cases
17/17 discrepant RSV B analytes were investigated using an alternate method; bi-directional sequence analysis identified the analyte in question in 11/17 cases
Table 27: Additional Co-Infection Combinations Detected by Reference/Comparator Methods, But Not by the eSensor RVP Assay in the Prospective Clinical Trial
| Distinct Co-InfectionCombinations* | TotalNumber ofCo-Infections | Number ofDiscrepantCo-infections | DiscrepantAnalyte(s) | |
|---|---|---|---|---|
| Analyte 1 | Analyte 2 | |||
| Flu B | HRV | 6 | 3 | Flu B (2), HRV (3) |
| Flu B | RSV B | 1 | 1 | Flu B (1), RSV B (1) |
| HRV | PIV3 | 13 | 3 | HRV (3), PIV3 (3) |
*This table includes only co-infections that were detected by the reference/comparator method but not by RVP; the remaining co-infections detected by the reference/comparator method are already represented in Table above.
| OrganismCombinations | NumberofSamples | % ofSamplesAnalyzed(N=1037) | OrganismCombinations | NumberofSamples | % ofSamplesAnalyzed(N=1037) |
|---|---|---|---|---|---|
| ADV B/E + Flu B | 2 | 0.2 | Flu A + HRV + PIV3 | 2 | 0.2 |
| ADV B/E + HRV | 2 | 0.2 | Flu A + RSV A + RSV B | 2 | 0.2 |
| ADV B/E + PIV3 | 3 | 0.3 | Flu A + ADV C + HRV + PIV3 | 1 | 0.1 |
| ADV B/E + RSV A | 2 | 0.2 | Flu A + ADV C + HRV + RSV A | 1 | 0.1 |
| ADV B/E + RSV B | 1 | 0.1 | Flu B + HRV | 4 | 0.4 |
| ADV B/E + HMPV + HRV + RSV A +RSV B | 1 | 0.1 | Flu B + PIV3 | 3 | 0.3 |
| ADV C + Flu B | 1 | 0.1 | Flu B + RSV A | 5 | 0.5 |
| ADV C + HMPV | 3 | 0.3 | Flu B + RSV B | 1 | 0.1 |
| ADV C + HRV | 6 | 0.6 | Flu B + HRV + PIV2 | 1 | 0.1 |
| ADV C + PIV3 | 1 | 0.1 | Flu B + HRV + RSV A | 2 | 0.2 |
| ADV C + RSV A | 4 | 0.4 | HMPV + HRV | 5 | 0.5 |
| ADV C + RSV B | 3 | 0.3 | HMPV + PIV3 | 1 | 0.1 |
| ADV C + HRV + PIV3 | 1 | 0.1 | HMPV + RSV B | 1 | 0.1 |
| ADV C + HRV + RSV A | 1 | 0.1 | HRV + PIV1 | 2 | 0.2 |
Table 28: Mixed Infections Detected by eSensor RVP in Prospective Samples
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| OrganismCombinations | NumberofSamples | % ofSamplesAnalyzed(N=1037) | OrganismCombinations | NumberofSamples | % ofSamplesAnalyzed(N=1037) |
|---|---|---|---|---|---|
| Flu A + ADV B/E | 1 | 0.1 | HRV + PIV2 | 1 | 0.1 |
| Flu A + ADV C | 6 | 0.6 | HRV + PIV3 | 11 | 1.1 |
| Flu A + Flu B | 2 | 0.2 | HRV + RSV A | 16 | 1.6 |
| Flu A + HMPV | 2 | 0.2 | HRV + RSV B | 8 | 0.8 |
| Flu A + HRV | 4 | 0.4 | HRV + PIV3 + RSV A | 1 | 0.1 |
| Flu A + PIV2 | 1 | 0.1 | HRV + PIV3 + RSV B | 1 | 0.1 |
| Flu A + PIV3 | 2 | 0.2 | PIV3 + RSV A | 6 | 0.6 |
| Flu A + RSV A | 1 | 0.1 | PIV3 + RSV B | 1 | 0.1 |
| Flu A + RSV B | 2 | 0.2 | Total Mixed Infections | 128 | 12.3 |
93% (963/1037) of the evaluable prospective clinical specimens vielded valid results on the first attempt. Invalid results or no results were obtained for the remaining 74 specimens (45 of which generated results on the first run, but required retesting due to a negative control failure caused by operator error). Data generated from the retests was used in the final analysis. All 74 specimens yielded valid results after a single retest when tested according the retest recommendations.
Testing of Preselected Archived Samples
Banked samples previously characterized as positive for Influenza A H1, Parainfluenza Virus 1, Parainfluenza Virus 2, Adenovirus B/E, and Adenovirus C were used to supplement the performance studies for these analytes. These frozen banked samples were collected from various sites across the United States or from the Centers for Disease Control and Prevention (CDC). Upon arrival at GenMark, banked samples were blinded and intermixed with negative samples before being sent for testing, which was conducted by multiple sites involved in the prospective analysis of the patient samples. Testing of the banked samples was performed identically to prospectively-collected patient specimens. Results from the banked samples are presented separately from the prospectively collected specimens.
A total of 343 retrospective banked samples were collected for analysis. Out of this sample set, 11 samples were sent which didn't contain a banked viral target so these eleven samples were not tested further. Eight additional samples were excluded as they didn't contain a banked viral target as originally reported by the collection site and confirmed by comparator testing. Two samples reported errors on targets but were not retested as indicated. One sample was not sequenced. One sample had an internal control failure but was not retested as indicated. After these data were excluded, a total of 320 banked samples (including negative samples) for 5 viral targets were collected and analyzed.
With the exception of Flu A H1 samples, these banked samples were also sent to Beckman Coulter for comparator testing, and the results from the Beckman Coulter testing were compared to the results obtained by the eSensor RVP. Since the Flu A H1 samples came from the Centers for Disease Control and Prevention and were verified to be Flu A H1, these samples were not sent to Beckman Coulter for further testing. The results are summarized in Table 29.
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| Positive Percent Agreement | Negative Percent Agreement | |||||
|---|---|---|---|---|---|---|
| Virus | TP/(TP+FN) | Percent | 95% CI | TN/(TN+FP) | Percent | 95% CI |
| Influenza A H1 | 29/30 | 96.7% | 82.8% - 99.9% | 290/290 | 100% | 98.7% - 100.0% |
| Parainfluenza Virus 1 | 25/25 | 100.0% | 86.3% - 100.0% | 289/295 | 98.0% | 95.6% - 99.3% |
| Parainfluenza Virus 2 | 26/26 | 100.0% | 86.8% - 100.0% | 284/294 | 96.6% | 93.8% - 98.4% |
| Adenovirus B/E | 25/25 | 100.0% | 86.3% - 100.0% | 290/295 | 98.3% | 96.1% - 99.4% |
| Adenovirus C | 16/16 | 100.0% | 80.6% - 100.0% | 270/304 | 88.8% | 84.8% - 91.9% |
Table 29: Performance in Retrospective Clinical Specimens (N=320)
eSensor RVP Performance in Fresh vs. Frozen Clinical Specimen
Simulated viral specimens were prepared by spiking viral transport media (Remel M5) with two different concentrations of ADV C viral culture (3x LoD and 1x LoD). To evaluate the performance of frozen specimens, 128 aliguots of ADV C (64 replicates each at 3x and 1x LoD) were prepared. Sixty four aliquots (32 at each testing concentration) were tested immediately after preparation (fresh) while 64 aliquots were tested after undergoing two freeze/thaw cycles (frozen). Positive percent agreement between RVP results from fresh versus frozen aliquots for all concentrations tested was calculated. The positive percent agreement between RVP results from fresh versus frozen aliquots was 100% (95% confidence interval 89.3% - 100%).
Prospective 2X2 Performance Tables:
| Influenza A | |||
|---|---|---|---|
| Reference | |||
| eSensor RVP | Positive | Negative | Total |
| Positive | 132 | 47a | 179 |
| Negative | 5b | 850 | 855 |
| Total | 137 | 897 | 1034 |
| Sensitivity: 96.4% (95% CI: 91.7% - 98.8%) | |||
| Specificity: 94.8% (95% CI: 93.1% - 96.1%) |
Table 30: Prospective Influenza A Results
a Influenza A virus was confirmed positive in 35/47 RVP False Positive samples using bidirectional sequencing. b Influenza A virus was not detected in all 5 RVP False Negative samples using independently developed and validated qPCR assays.
| Table 31: Prospective Influenza A H1 Results | ||||
|---|---|---|---|---|
| -- | ---------------------------------------------- | -- | -- | -- |
| Influenza A H1 | |||
|---|---|---|---|
| Reference | |||
| eSensor RVP | Positive | Negative | Total |
| Positive | 0 | 0 | 0 |
| Negative | 0 | 1027 | 1027 |
| Total | 0 | 1027 | 1027 |
| Sensitivity: N/A | |||
| Specificity: 100.0% (95% CI: 99.6% - 100.0%) |
{35}------------------------------------------------
| Influenza A H3 | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 74 | 25a | 99 |
| Negative | 0 | 927 | 927 |
| Total | 74 | 952 | 1026 |
| Sensitivity: 100.0% (95% CI: 95.1% - 100.0%) | |||
| Specificity: 97.4% (95% CI: 96.2% - 98.3%) |
Table 32: Prospective Influenza A H3 Results
a Influenza A H3 virus was confirmed positive in 22/25 RVP False Positive samples using bidirectional sequencing.
| Influenza A 2009 H1N1 | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 49 | 15a | 64 |
| Negative | 0 | 956 | 956 |
| Total | 49 | 971 | 1020 |
| Sensitivity: 100.0% (95% CI: 92.7% - 100.0%) | |||
| Specificity: 98.5% (95% CI: 97.5% - 99.1%) |
Table 33: Prospective Influenza A 2009 H1N1 Results
a Influenza A 2009 HINI virus was confirmed positive in 14/15 RVP False Positive samples using bidirectional sequencing.
| Influenza B | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 64 | 18a | 82 |
| Negative | 5b | 947 | 952 |
| Total | 69 | 965 | 1034 |
| Sensitivity: 92.8% (95% CI: 83.9% - 97.6%) | |||
| Specificity: 98.1% (95% CI: 97.1% - 98.9%) |
Table 34: Prospective Influenza B Results
a Influenza B virus was confirmed positive in 11/18 RVP False Positive samples using bidirectional sequencing.
b Influenza B virus was not detected in 4/5 RVP False Negative samples using independently developed and validated qPCR assays.
{36}------------------------------------------------
| Respiratory Syncytial Virus A | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 68 | 51a | 119 |
| Negative | 0 | 905 | 905 |
| Total | 68 | 956 | 1024 |
| Sensitivity: 100.0% (95% CI: 94.7% - 100.0%) | |||
| Specificity: 94.7% (95% CI: 93.1% - 96.0%) |
Table 35: Prospective RSVA Results
a Respiratory Syncytial Virus type A was confirmed positive in 43/51 RVP False Positive samples using bidirectional sequencing.
| Respiratory Syncytial Virus B | ||||
|---|---|---|---|---|
| eSensor RVP | Reference | Positive | Negative | Total |
| Positive | 28. | 41a | 69 | |
| Negative | 0 | 955 | 955 | |
| Total | 28 | 996 | 1024 | |
| Sensitivity: 100.0% (95% CI: 87.7% - 100.0%) | ||||
| Specificity: 95.9% (95% CI: 94.5% - 97.0%) |
Table 36: Prospective RSVB Results
a Respiratory Syncytial Virus type B was confirmed positive in 35/41 RVP False Positive samples using bidirectional sequencing.
| Parainfluenza Virus 1 | |||
|---|---|---|---|
| Reference | |||
| eSensor RVP | Positive | Negative | Total |
| Positive | 4 | 1a | 5 |
| Negative | 0 | 1029 | 1029 |
| Total | 4 | 1030 | 1034 |
| Sensitivity: 100.0% (95% CI: 39.8% - 100.0%) | |||
| Specificity: 99.9% (95% CI: 99.5% - 100.0%) |
Table 37: Prospective PIV1 Results
a PIV 1 was not detected in this RVP False Positive sample by bidirectional sequencing.
{37}------------------------------------------------
| Parainfluenza Virus 2 | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 5 | 2a | 7 |
| Negative | 1b | 1026 | 1027 |
| Total | 6 | 1028 | 1034 |
| Sensitivity: 83.3% (95% CI: 35.9% - 99.6%) | |||
| Specificity: 99.8% (95% CI: 99.3% - 100.0%) |
Table 38: Prospective PIV2 Results
a Parainfluenza type 2 virus was confirmed positive in 0/2 RVP False Positive samples by bidirectional sequencing.
b Parainfluenza type 2 virus was not detected in this RVP False Negative sample using independently developed and validated qPCR assays.
| Parainfluenza Virus 3 | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 64 | 22a | 86 |
| Negative | 4b | 944 | 948 |
| Total | 68 | 966 | 1034 |
| Sensitivity: 94.1% (95% CI: 85.6% - 98.4%) | |||
| Specificity: 97.7% (95% CI: 96.6% - 98.6%) |
Table 39: Prospective PIV3 Results
a Parainfluenza type 3 virus was confirmed positive in 10/22 RVP False Positive samples using bidirectional sequencing. b Parainfluenza type 3 virus was not detected in 4/4 RVP False Negative samples using independently developed and validated qPCR assays.
| Human Metapneumovirus | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 55 | 2a | 57 |
| Negative | 0 | 979 | 979 |
| Total | 55 | 981 | 1036 |
| Sensitivity: 100.0% (95% CI: 93.5% - 100.0%) | |||
| Specificity: 99.8% (95% CI: 99.3% - 100.0%) |
Table 40: Prospective HMPV Results
a Human metapneumovirus was confirmed positive in 1/2 RVP False Positive samples using bidirectional sequencing.
{38}------------------------------------------------
| Human Rhinovirus | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 132 | 35a | 167 |
| Negative | 16 | 853 | 869 |
| Total | 148 | 888 | 1036 |
| Sensitivity: 89.2% (95% CI: 83.0% - 93.7%) | |||
| Specificity: 96.1% (95% CI: 94.6% - 97.3%) |
Table 41: Prospective HRV Results
a Human rhinovirus was confirmed positive in 7/35 RVP False Positive samples using bidirectional sequencing.
| Adenovirus B/E | |||
|---|---|---|---|
| Reference | |||
| eSensor RVP | Positive | Negative | Total |
| Positive | 13 | 9a | 22 |
| Negative | 0 | 1012 | 1012 |
| Total | 13 | 1021 | 1034 |
| Sensitivity: 100.0% (95% CI: 75.3% - 100.0%) | |||
| Specificity: 99.1% (95% CI: 98.3% - 99.5%) |
| Table 42: Prospective ADV B/E Results | |||
|---|---|---|---|
a Adenovirus type B/E was confirmed positive in 8/9 RVP False Positive samples using bidirectional sequencing.
| Table 43: Prospective ADV C Results | |
|---|---|
| -------------------------------------- | -- |
:
| Adenovirus C | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 6 | 35a | 41 |
| Negative | 0 | 993 | 993 |
| Total | 6 | 1028 | 1034 |
| Sensitivity: 100.0% (95% CI: 54.1% - 100.0%) | |||
| Specificity: 96.6% (95% CI: 95.3% - 97.5%) |
a Adenovirus type C was confirmed positive in 16/35 RVP False Positive samples using bidirectional sequencing.
{39}------------------------------------------------
Retrospective 2X2 Performance Tables:
| Influenza A (Banked Samples) | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 29 | 0 | 29 |
| Negative | 1 | 290 | 291 |
| Total | 30 | 290 | 320 |
| Positive Percent Agreement: 96.7% (95% CI: 82.8% - 99.9%) | |||
| Negative Percent Agreement: 100.0% (95% CI: 98.7% - 100.0%) |
Table 44: Retrospective Influenza A H1 Results
r Table 45: Retrospective PIV1 Results
| PIV1 (Banked Samples) | ||||
|---|---|---|---|---|
| eSensor-RVP | Reference | Positive | Negative | Total |
| Positive | 25 | 6 | 31 | |
| Negative | 0 | 289 | 289 | |
| Total | 25 | 295 | 320 | |
| Positive Percent Agreement: 100.0% (95% CI: 86.3% - 100.0%) | ||||
| Negative Percent Agreement: 98.0% (95% CI: 95.6% - 99.3%) |
Table 46: Retrospective PIV2 Samples
| PIV2 (Banked Samples) | |||
|---|---|---|---|
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 26 | 10 | 36 |
| Negative | 0 | 284 | 284 |
| Total | 26 | 294 | 320 |
| Positive Percent Agreement: 100.0% (95% CI: 86.8% - 100.0%) | |||
| Negative Percent Agreement: 96.6% (95% CI: 93.8% - 98.4%) |
Table 47: Retrospective ADV B/E Results
| ADV B/E (Banked Samples) | |||
|---|---|---|---|
| eSensor RVP | Reference Positive | Reference Negative | Total |
| Positive | 25 | 5 | 30 |
| Negative | 0 | 290 | 290 |
| Total | 25 | 295 | 320 |
| Positive Percent Agreement: 100.0% (95% CI: 86.3% - 100.0%) | |||
| Negative Percent Agreement: 98.3% (95% CI: 96.1% - 99.4%) |
·
{40}------------------------------------------------
| Table 48: Retrospective ADV C Results | |||
|---|---|---|---|
| ADV C (Banked Samples) | |||
| eSensor RVP | Reference | ||
| Positive | Negative | Total | |
| Positive | 16 | 34 | 50 |
| Negative | 0 | 270 | 270 |
| Total | 16 | 304 | 320 |
| Positive Percent Agreement: 100.0% (95% CI: 80.6% - 100.0%) | |||
| Negative Percent Agreement: 88.8% (95% CI: 84.8% - 91.9%) |
. . . . .
.
.
.
Table 48: Retrospective ADV C Results
.
:
.
And Children Children
{41}------------------------------------------------
DEPARTMENT OF HEALTH & HUMAN SERVICES
Image /page/41/Picture/1 description: The image shows the logo for the U.S. Department of Health & Human Services. The logo is circular and contains the words "DEPARTMENT OF HEALTH & HUMAN SERVICES - USA" around the perimeter. Inside the circle is an abstract image of an eagle or other bird with its wings spread.
Public Health Service
SEP
Food and Drug Administration 10903 New Hampshire Avenue Silver Spring, MD 20993
1 0 2012
GenMark Diagnostics, Inc.
c/o Joel Centeno
VP Regulatory, Quality, Clinical
5964 La Place Court
Carlsbad, CA 92008
c/o Joel Centeno
VP Regulatory, Quality, Clinical
5964 La Place Court
Carlsbad, CA 92008
Re: K113731 Trade/Device Name: eSensor® Respitory Viral Panel (RVP) Regulation Number: 21 CFR 866.3980 Regulation Name: Respitory viral panel multiplex nucleic acid assay Regulatory Class: Class II Product Code: OCC, OEM, OOU, OEP, OQW, NSU, OUL, JJH Dated: September 4, 2012 Received: September 6, 2012
Dear Mr. Centeno:
We have reviewed your Section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration.
If your device is classified (see above) into class II (Special Controls), it may be subject to such additional controls. Existing major regulations affecting your device can be found in Title 21, Code of Federal Regulations (CFR), Parts 800 to 895. In addition, FDA may publish further announcements concerning your device in the Federal Register.
Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Parts 801 and 809); medical device reporting (reporting of medical device-related adverse events) (21 CFR 803); and good manufacturing practice
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Page 2 - Mr. Joel Centeno
requirements as set forth in the quality systems (QS) regulation (21 CFR Part 820). This letter will allow you to begin marketing your device as described in your Section 510(k) premarket notification. The FDA finding of substantial equivalence of your device to a legally marketed predicate device results in a classification for your device and thus, permits your device to proceed to the market.
If you desire specific advice for your device on our labeling regulation (21 CFR Parts 801 and 809), please contact the Office of In Vitro Diagnostic Device Evaluation and Safety at (301) 796-5450. Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21 CFR Part 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to
http://www.fda.gov/MedicalDevices/Safety/ReportalProblem/default.htm for the CDRH's Office of Surveillance and Biometrics/Division of Postmarket Surveillance.
You may obtain other general information on your responsibilities under the Act from the Division of Small Manufacturers, International and Consumer Assistance at its toll-free number (800) 638-2041 or (301) 796-7100 or at its Internet address http://www.fda.gov/cdrh/industry/support/index.html.
Sincerely yours,
Soy aos
Sally A. Hojvat, M.Sc., Ph.D. Director Division of Microbiology Devices Office of In Vitro Diagnostic Device Evaluation and Safety Center for Devices and Radiological Health
Enclosure
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Indications for Use Form
510(k) Number (if known): K113731
Device Name: eSensor® Respiratory Viral Panel (RVP)
Indications for Use:
The eSensor® Respiratory Viral Panel (RVP) is a qualitative nucleic acid multiplex In vitro diagnostic test intended for use on the eSensor XT-8TM system for the simulaneous detection of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals exhibiting signs and symptoms of respiratory infection.
The following virus types and subtypes are identified using the eSensor RVP: Influenza A H1 Seasonal Subtype, Influenza A H3 Seasonal Subtype, Influenza A 2009 H1N1 sublype, Influenza B, Respiratory Syncytial Virus subtype A, Respiratory Syncytial Virus subtype B, Parainfluenza Virus 2, Parainfluenza Virus 3, Human Metapneumovirus, Human Rhinovirus, Adenovirus species B/E, and Adenovirus species C.
The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of respiratory intection aids in the diagnosis of respiratory viral Infection if used in conjunction with other clinical and epidemiological information.
Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other patient management decisions. Positive results do not nate out bacterial infection with other viruses. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence and radiography) and clinical presentation must be taken into consideration in the final diagnosis of respiratory viral infection.
Performance characteristics for Influenza A were established during the 2010/2011 influenza A 2009 H1N1 and H3N2 were the predominant Influenza A viruses in circulation. When other Influenza A viruses emerge performance characteristics may vary.
If infection with a novel Influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.
X
Prescription Use
(Part 21 CFR 801 Subpart D)
AND/OR
Over-The-Counter Use
(21 CFR 801 Subpart C
(21 CFR 801 Subpart C)
(PLEASE DO NOT WRITE BELOW THIS LINE-CONTINUE ON ANOTHER PAGE OF NEEDED)
Concurrence of CDRH, Office of In Vitro Diagnostic Devices (OIVD)
Tamara Feldblyum
Division Sign-Off Office of In Vitro Diagnostic Device Evaluation and Safety
510(k) K113731
Page 1 of 1
§ 862.2310 Clinical sample concentrator.
(a)
Identification. A clinical sample concentrator is a device intended to concentrate (by dialysis, evaporation, etc.) serum, urine, cerebrospinal fluid, and other body fluids before the fluids are analyzed.(b)
Classification. Class I (general controls). The device is exempt from the premarket notification procedures in subpart E of part 807 of this chapter subject to the limitations in § 862.9.