(40 days)
FilmArray Respiratory Panel (RP) is a multiplexed nucleic acid test intended for use with the FilmArray instrument for the simultaneous qualitative detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals suspected of respiratory tract infections. The following virus types and subtypes are identified using the FilmArray RP: Adenovirus, Coronavirus HKU1, Coronavirus NL63, Human Metapneumovirus, Influenza A, Influenza A subtype H1, Influenza A subtype H3, Influenza A subtype 2009 H1, Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza Virus 3, Parainfluenza Virus 4, Rhinovirus/Enterovirus, and Respiratory Syncytial Virus. The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of a respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and epidemiological information. Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other management decisions. Positive results do not rule out bacterial infection or co-infection with other organisms. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence, and radiography) and clinical presentation must be taken into consideration in order to obtain the final diagnosis of respiratory infection.
Due to seasonal prevalence, performance characteristics for Influenza A/H1, Influenza A/H3, Influenza A/2009 H1, Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2, and Parainfluenza Virus 4 were established primarily with retrospective clinical specimens.
Due to the genetic similarity between human Rhinovirus and Enterovirus, the FilmArray RP cannot reliably differentiate them. A positive FilmArray RP Rhinovirus/Enterovirus result should be followed-up using an alternate method (e.g. cell culture or sequence analysis).
The FilmArray RP detects Adenovirus species C serotype 2 and serotype 6 with reduced sensitivity. It is recommended that specimens found to be negative for Adenovirus after examination using FilmArray RP be confirmed by an alternate method (e.g. FDA cleared molecular test or cell culture).
Performance characteristics for influenza A were established when influenza A/2009 H1N1, A/H1, and A/H3 were the predominant influenza A viruses in circulation. When other influenza A viruses are emerging, performance characteristics may vary. If infection with a novel influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.
The FilmArray RP System is a multiplex nucleic acid test system composed of the FilmArray instrument, the FilmArray software (preinstalled on a laptop computer) and the FilmArray RP pouch. The FilmArray RP pouch contains freeze-dried reagents to perform nucleic acid purification, reverse transcription, and nested, multiplex PCR with DNA melt analysis. The Respiratory Panel (RP) pouch identifies 15 common and emerging viral respiratory pathogens (see Table 1).
A test is initiated by loading Hydration Solution and an unprocessed patient nasopharyngeal swab (NPS) specimen (i.e. specimen mixed with Sample Buffer) into the FilmArray RP pouch. The pouch contains all of the reagents required for specimen testing and analysis in a freeze-dried format; the addition of Hydration Solution and Sample/Buffer Mix rehydrates the reagents. After the pouch is prepared, the FilmArray software guides the user though the steps of placing the pouch into the instrument, scanning the pouch barcode, entering the sample identification and initiating the run.
The FilmArray instrument contains a coordinated system of inflatable bladders and seal points, which act on the pouch to control the movement of liquid between the pouch blisters. When a bladder is inflated over a reagent blister, it forces liquid from the blister into connecting channels. Alternatively, when a seal is placed over a connecting channel it acts as a valve to open or close a channel. In addition, electronically controlled pneumatic pistons are positioned over multiple plungers in order to deliver the rehydrated reagents into the blisters at the appropriate times. Two Peltier devices control heating and cooling of the pouch to drive the reverse transcription reactions, the PCR reactions, and the melting curve analysis.
Nucleic acid extraction occurs within the FilmArray pouch using mechanical lysis and standard magnetic bead technology. After extracting and purifying nucleic acids from the unprocessed sample, the FilmArray performs a nested multiplex PCR that is executed in two stages. During the first stage, the FilmArray performs a single, large volume, highly multiplexed reverse transcription PCR (rt-PCR) reaction. The products from first stage PCR are then diluted and combined with a fresh, primer-free master mix and a fluorescent double stranded DNA binding dve (LC Green@Plus, Idaho Technology). This second master mix solution, is then distributed to each well of the array. Array wells contain sets of primers designed specifically to amplify sequences internal to the PCR products generated during the first stage PCR reaction. The second stage PCR, or nested PCR, is performed in singleplex fashion in each well of the array. At the conclusion of the 200 stage PCR, the array is interrogated by melting curve analysis for the detection of signature amplicons denoting the presence of specific viral or bacterial targets A digital camera placed in front of the second stage PCR captures fluorescent images of the PCR reactions in real time.
The FilmArray software automatically interprets the results of each DNA melting curve analysis and combines the data with the results of the internal pouch controls to provide a test result for each organism on the panel.
Here's a breakdown of the acceptance criteria and the study that proves the device meets them, based on the provided text:
Device: FilmArray Respiratory Panel (RP) System
Purpose of 510(k) submission: To support unmasking of test results for the Parainfluenza Virus 1, 2, and 4 (PIV1, PIV2, PIV4) assays in the FilmArray RP.
1. Table of Acceptance Criteria and Reported Device Performance
The acceptance criteria are generally implied standards for diagnostic tests (e.g., high sensitivity and specificity). The reported device performance is directly from the study results.
| Performance Metric | Acceptance Criteria (Implied) | Reported Device Performance (PIV1, PIV2, PIV4) - Clinical Study | Reported Device Performance (PIV1, PIV2, PIV4) - Archived Specimens |
|---|---|---|---|
| Clinical Sensitivity (PPA) | High (>85-90%) | PIV1: 100% (1/1) | PIV1: 97.1% (34/35) |
| PIV2: 87.4% (7/8) | PIV2: 100% (28/28) | ||
| PIV4: 100% (9/9) | PIV4: 100% (11/11) | ||
| Clinical Specificity (NPA) | High (>90-95%) | PIV1: 99.9% (1115/1116) | PIV1: 100.0% (94/94) |
| PIV2: 99.8% (1107/1109) | PIV2: 100.0% (101/101) | ||
| PIV4: 99.9% (1107/1108) | PIV4: 100.0% (6/6) | ||
| Limit of Detection (LoD) | Consistent detection (≥95%) at specified concentration | PIV1: 500 TCID50/mL | Not applicable |
| PIV2: 10 TCID50/mL | Not applicable | ||
| PIV4: 5000 TCID50/mL | Not applicable | ||
| Analytical Reactivity (Inclusivity) | Detection of diverse strains at or near LoD | All tested PIV1, PIV2, PIV4 strains detected at 1x LoD. | Not applicable |
| Analytical Specificity (Cross-reactivity/Exclusivity) | No cross-reactivity with common/related organisms | No cross-reactivity observed with tested organisms (Table 13, 14, 15), except for Adenovirus in one Measles virus stock. | Not applicable |
| Precision (Reproducibility) | High agreement with expected results across sites and runs | PIV1 (Med/Low Pos): 98.3%-100% agreement. PIV2/PIV4 (Med/Low Pos): 100% agreement. (See Tables 16, 17, 18) | Not applicable |
| Precision (Repeatability) | High agreement with expected results in-house | PIV1: 97.9%-100% (Mod/Low Pos); PIV2: 97.9%-100% (Mod/Low Pos); PIV4: 100% (Mod/Low Pos). (Table 19) | Not applicable |
| Interference | No significant interference from common substances | None of the tested endogenous/exogenous substances found to interfere. | Not applicable |
2. Sample Size Used for the Test Set and Data Provenance
Clinical Performance Study (Prospective):
- Sample Size: 1117 subjects (after exclusions) from an initial enrollment of 1144.
- Data Provenance: Prospective study conducted at 3 U.S. clinical sites. Enrollment spanned December 2009 - May 2010 and September 2010 - January 2011 (two respiratory seasons).
Archived Specimens Study (Retrospective):
- Sample Size: 147 confirmed specimens tested (from 168 initially selected).
- Data Provenance: Retrospective study using preselected archived clinical nasopharyngeal swab (NPS) specimens. The origin of these archived samples is not specified beyond being "preselected" and from "one source" (a pediatric hospital mentioned for age range).
3. Number of Experts Used to Establish the Ground Truth for the Test Set and Their Qualifications
The term "experts" in the context of diagnostic assay ground truth typically refers to reference laboratory personnel or clinicians involved in the gold standard method. The document describes the methods used to establish ground truth rather than explicitly stating the number and qualifications of individuals.
For Parainfluenza Virus 1 and 2 (Clinical Study):
- Ground Truth Method: Viral culture followed by DFA (Direct Fluorescent Antibody) identification.
- Implicit Expertise: Laboratory technicians/virologists skilled in viral culture techniques and DFA interpretation. No specific number or qualifications (e.g., years of experience) mentioned.
For Parainfluenza Virus 4 (Clinical Study):
- Ground Truth Method: Viral culture followed by one analytically validated PCR assay with bi-directional sequence confirmation.
- Implicit Expertise: Laboratory technicians/virologists skilled in viral culture, PCR amplification, and sequence analysis. No specific number or qualifications mentioned.
For Archived Specimens Study:
- Ground Truth Method: Analyte-specific PCR and bi-directional sequencing.
- Implicit Expertise: Laboratory personnel proficient in molecular diagnostic techniques and sequence analysis. No specific number or qualifications mentioned.
4. Adjudication Method for the Test Set
The document does not explicitly describe an "adjudication method" in the typical sense of multiple experts reviewing discordant results. Instead, it describes how "true" positive/negative status was determined based on the outcomes of the reference methods:
- Clinical Study (PIV1, PIV2, PIV4):
- For PIV1 and PIV2, "True" positives/negatives were defined by the viral culture with DFA results.
- For PIV4, "True" positives were defined by bi-directional sequencing data matching NCBI GenBank sequences from viral culture material. "True" negatives were defined by negative results from the comparator PCR assay on viral culture material.
- Discrepancies between the FilmArray RP and comparator methods were sometimes further investigated (e.g., PIV1 was identified in one discordant specimen by bi-directional sequence analysis; PIV2 in false positive specimens by bi-directional sequencing). This suggests a form of post-hoc review for discrepant results, but not a front-end adjudication process by multiple independent experts defining ground truth prior to or independent of the reference method.
- Archived Specimens Study: Ground truth was established by "analyte specific PCR and bi-directional sequencing" prior to FilmArray RP testing. The study design meant users testing with FilmArray RP were "blinded as to the expected test result." This indicates the ground truth was predetermined by molecular methods.
5. If a Multi-Reader Multi-Case (MRMC) Comparative Effectiveness Study was done
No, a Multi-Reader Multi-Case (MRMC) comparative effectiveness study was not performed. This study focuses on the diagnostic performance of the device itself against reference methods, not on comparing human reader performance with and without AI assistance. The FilmArray RP is an automated diagnostic system, not an AI-assisted interpretation tool for human readers.
6. If a Standalone (Algorithm Only Without Human-in-the-Loop Performance) was done
Yes, the study describes the standalone performance of the FilmArray RP System.
- The FilmArray RP is a fully automated system from specimen loading to result interpretation. The "FilmArray software automatically interprets the results of each DNA melting curve analysis and combines the data with the results of the internal pouch controls to provide a test result for each organism on the panel."
- The clinical sensitivity, specificity, and analytical studies (LoD, inclusivity, specificity, precision, interference) all evaluate the performance of this automated system directly against established reference methods or controlled conditions, without human interpretation as part of the primary diagnostic output.
7. The Type of Ground Truth Used
- Clinical Performance Study:
- Expert Consensus: Not explicitly stated as consensus among multiple experts. The ground truth was established by viral culture followed by DFA (PIV1, PIV2) and viral culture followed by analytically validated PCR with bi-directional sequence confirmation (PIV4). These are established laboratory diagnostic methods often considered gold standards for viral detection at the time.
- Pathology: Not applicable, as this is a viral detection assay, not tissue pathology.
- Outcomes Data: Not primarily outcomes data, but a direct comparison to laboratory reference methods for pathogen presence.
- Archived Specimens Study:
- Molecular Confirmation: Ground truth was established using analyte-specific PCR and bi-directional sequencing. This is a highly specific molecular method for confirming the presence or absence of viral nucleic acid.
8. The Sample Size for the Training Set
The document does not specify a training set size because it describes a diagnostic device validation study, not a machine learning model development study with separate training and testing sets. The FilmArray RP is a molecular diagnostic assay using pre-programmed algorithms for interpretation, not a learnable AI algorithm that requires a "training set" in the machine learning sense. The device's internal algorithms and reagents are developed, and then validated with the clinical and analytical performance studies described.
9. How the Ground Truth for the Training Set Was Established
As noted above, there is no "training set" in the context of machine learning for this device. The device's operational parameters and interpretive logic are presumably established during its development phase using a combination of scientific principles, laboratory experiments, and internal validation, rather than through labeled training data as used in AI.
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APR 2 7 2011
10 510(k) Summary
510(k) Summary Idaho Technology Inc.
Modification of FilmArray RP Test System To unmask results for PIV1, PIV2 and PIV4 assays in the FilmArray RP
Introduction: According to the requirements of 21 CFR 807.92, the following information provides sufficient detail to understand the basis for a determination of substantial equivalence.
Submitted by:
Idaho Technology Inc 390 Wakara Way Salt Lake City, UT 84108
Telephone: 801-736-6354 Facsimile: 801-588-0507
Contact: Beth Lingenfelter, ext. 407
Date Submitted: March 17, 2011
Device Name and Classification:
Trade Name: FilmArray RP System
Regulation Number: 21 CFR 866.3980
Classification Name: Respiratory Viral Panel Multiplex Nucleic Acid Assay
Predicate Device:
K063765, K081483, K091677 - Luminex® xTAG™ Respiratory Viral Panel (RVP).
Intended Use:
The FilmArray Respiratory Panel (RP) is a multiplexed nucleic acid test intended for use with the FilmArray instrument for the simultaneous qualitative detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals suspected of respiratory tract infections. The following virus types and subtypes are identified using the FilmArray RP: Adenovirus, Coronavirus
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HKU1, Coronavirus NL63. Human Metapneumovirus, Influenza A, Influenza A subtype H1, Influenza A subtype H3, Influenza A subtype 2009 H1, Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza virus 3, Parainfluenza Virus 4, Rhinovirus/Enterovirus, and Respiratory Syncytial Virus. The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of a respiratory infection aids in the diagnosis of respiratory infection if used in conjunction with other clinical and epidemiological information. Negative results do not preclude respiratory infection and should not be used as the sole basis for diagnosis, treatment or other management decisions. Positive results do not rule out bacterial infection or coinfection with other organisms. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence, and radiography) and clinical presentation must be taken into consideration in order to obtain the final diagnosis of respiratory infection.
Due to seasonal prevalence, performance characteristics for Influenza A/H1, Influenza A/H3, Influenza A/2009 H1, Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2, and Parainfluenza Virus 4 were established primarily with retrospective clinical specimens.
Due to the genetic similarity between human Rhinovirus and Enterovirus, the FilmArray RP cannot reliably differentiate them. A positive FilmArray RP Rhinovirus/Enterovirus result should be followed-up using an alternate method (e.g. cell culture or sequence analysis).
The FilmArray RP detects Adenovirus species C serotype 2 and serotype 6 with reduced sensitivity. It is recommended that specimens found to be negative for Adenovirus after examination using FilmArray RP be confirmed by an alternate method (e.g. FDA-cleared molecular test or cell culture).
Performance characteristics for influenza A were established when influenza A/2009 H1N1, A/H1, and A/H3 were the predominant influenza A viruses in circulation. When other influenza A viruses are emerging, performance characteristics may vary. If infection with a novel influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.
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Device Description:
The FilmArray RP System is a multiplex nucleic acid test system composed of the FilmArray instrument, the FilmArray software (preinstalled on a laptop computer) and the FilmArray RP pouch. The FilmArray RP pouch contains freeze-dried reagents to perform nucleic acid purification, reverse transcription, and nested, multiplex PCR with DNA melt analysis. The Respiratory Panel (RP) pouch identifies 15 common and emerging viral respiratory pathogens (see Table 1).
| Table 1. Viruses Detected by the Film Array Respiratory Panel | |||||||
|---|---|---|---|---|---|---|---|
| --------------------------------------------------------------- | -- | -- | -- | -- | -- | -- | -- |
| Viral Respiratory Pathogens |
|---|
| Influenza A |
| H1 subtype |
| H3 subtype |
| 2009 H1 subtype |
| Influenza B |
| Adenovirus |
| Coronavirus HKU1 |
| Coronavirus NL63 |
| Human Metapneumovirus |
| Parainfluenza Virus 1 |
| Parainfluenza Virus 2 |
| Parainfluenza Virus 3 |
| Parainfluenza Virus 4 |
| Respiratory Syncytial Virus |
| Rhinovirus and Enterovirus |
A test is initiated by loading Hydration Solution and an unprocessed patient nasopharyngeal swab (NPS) specimen (i.e. specimen mixed with Sample Buffer) into the FilmArray RP pouch. The pouch contains all of the reagents required for specimen testing and analysis in a freeze-dried format; the addition of Hydration Solution and Sample/Buffer Mix rehydrates the reagents. After the pouch is prepared, the FilmArray software guides the user though the steps of placing the pouch into the instrument, scanning the pouch barcode, entering the sample identification and initiating the run.
The FilmArray instrument contains a coordinated system of inflatable bladders and seal points, which act on the pouch to control the movement of liquid between the pouch blisters. When a bladder is inflated over a reagent blister, it forces liquid from the blister into connecting channels. Alternatively, when a seal is placed over a connecting channel it acts as a valve to open or close a channel. In addition, electronically controlled pneumatic pistons are positioned over multiple plungers in order to deliver the rehydrated reagents into the blisters at the appropriate times. Two Peltier devices control heating and cooling of the pouch to drive the reverse transcription reactions, the PCR reactions, and the melting curve analysis.
Nucleic acid extraction occurs within the FilmArray pouch using mechanical lysis and standard magnetic bead technology. After extracting and purifying nucleic acids from the
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unprocessed sample, the FilmArray performs a nested multiplex PCR that is executed in two stages. During the first stage, the FilmArray performs a single, large volume, highly multiplexed reverse transcription PCR (rt-PCR) reaction. The products from first stage PCR are then diluted and combined with a fresh, primer-free master mix and a fluorescent double stranded DNA binding dve (LC Green@Plus, Idaho Technology). This second master mix solution, is then distributed to each well of the array. Array wells contain sets of primers designed specifically to amplify sequences internal to the PCR products generated during the first stage PCR reaction. The second stage PCR, or nested PCR, is performed in singleplex fashion in each well of the array. At the conclusion of the 200 stage PCR, the array is interrogated by melting curve analysis for the detection of signature amplicons denoting the presence of specific viral or bacterial targets A digital camera placed in front of the second stage PCR captures fluorescent images of the PCR reactions in real time.
The FilmArray software automatically interprets the results of each DNA melting curve analysis and combines the data with the results of the internal pouch controls to provide a test result for each organism on the panel.
Substantial Equivalence:
The Luminex® xTAG™ RVP is a PCR-based system for detecting the presence of viral nucleic acid in nasopharyngeal swabs collected from individuals with signs and symptoms of respiratory illness. The similarities and differences between the xTAG RVP and the FilmArrav RP are outlined below.
| Element | FilmArray Respiratory Panel TestSystem | Luminex® xTAG™ RVP |
|---|---|---|
| OrganismsDetected | Influenza A, Influenza A subtype H1,Influenza A subtype H3, Influenza B,Respiratory Syncytial Virus, humanMetapneumovirus, Adenovirus,Parainfluenza 1, Parainfluenza 2,Parainfluenza 3, andRhinovirus/Enterovirus | Same except the differences listed below |
| Analyte | RNA/DNA | Same |
| TechnologicalPrinciples | multiplex nucleic acid | Same except the differences listedbelow |
| SpecimenTypes | Nasopharyngeal swabs | Same |
Table 2. Similarities between the xTAG RVP and the FilmArray RP
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| Element | FilmArray Respiratory Panel TestSystem | Luminex® xTAG™ RVP |
|---|---|---|
| OrganismsDetected | Can distinguish Influenza A subtype 2009H1 from Influenza A subtype H1.Also detects Coronavirus NL63,Coronavirus HKU1, and Parainfluenza 4. | Can distinguish Respiratory Syncytial VirusType A from Respiratory Syncytial VirusType B. |
| TechnologicalPrinciples | Nested multiplex RT-PCR followed by highresolution melting analysis to confirmidentity of amplified product. | Multiplex RT-PCR and multiplex TSPEfollowed by Fluorescence-activated sortingof labeled beads coupled to streptavidin-conjugated biotinylated products |
| Instrumentation | FilmArray Instrument | PCR ThermocyclerLuminex® 100 IS or 200 system |
| Time to result | Less than 1 hour | Approximately 8 hours |
| TestInterpretation | Automated test interpretation and reportgeneration. User cannot access raw data. | Semi-automated test interpretation. Usermust review all "no call" results todetermine cause and retesting strategy. |
| SamplePreparationMethod | Sample Processing is automated in theFilmArray instrument. | Up front sample processing is required toextract nucleic acid. |
| ReagentStorage | Reagents are stored at room temperature. | Reagents stored at 4°C and -20°C. |
| Controls | Two controls are included in each reagentpouch to control for sample processing andboth stages of PCR and melt analysis. | Internal control added to each sample.External control processed with each batchof samples. |
| UserComplexity | Moderate/Low | High |
Table 3. Differences between the xTAG RVP and the FilmArray RP
Summary of Performance Data for Parainfluenza Viruses 1, 2 and 4
The purpose of this 510(k) is to support unmasking of test results for the Parainfluenza Virus 1, 2 and 4 assays that are part of the FilmArray RP. Refer to the 510k summary for K103175 for performance data of the previously cleared assays (Adenovirus, Coronavirus HKU1, Coronavirus NL63, Human Metapneumovirus, Influenza A, Influenza A subtype H1, Influenza A subtype H3, Influenza A subtype 2009 H1, Influenza B, Parainfluenza Virus 3, Rhinovirus/Enterovirus, and Respiratory Syncytial).
Clinical Performance
The clinical performance of the FilmArray RP system for Parainfluenza Viruses 1, 2, and 4 was established during a prospective study at 3 U.S. clinical sites where enrollment spanned an 11 month time period encompassing two respiratory seasons (December 2009 - May 2010 and September 2010 - January 2011). Subjects with signs and/or symptoms of respiratory infection were invited to participate. Upon obtaining informed consent, NPS samples were collected for FilmArray and comparator testing; a second respiratory
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sample was collected from each subject for viral culture reference testing. A total of 1144 subjects were initially enrolled in the study (857, at 3 sites, between December 2009 and May 2010; 287, at 2 sites, between September 2010 and January 2011) and four were withdrawn. Specimens from 20 subjects were omitted from analysis due to improper storage prior to testing: and 3 specimens were omitted due to the lack of valid external control mix results on the day of testing. Table 4, provides a summary of demographic information for the remaining 1117 subjects that participated in the prospective study.
| Sex | Number of Subjects |
|---|---|
| Male | 600 (54%) |
| Female | 517 (46%) |
| Age | |
| ≤5 | 724 (65%) |
| 6-21 | 119 (11%) |
| 22-49 | 190 (17%) |
| ≥50 | 84 (8%) |
Table 4. Demographic Summary for FilmArray RP Prospective Study (All Specimens Analyzed for PIV1, PIV2, and PIV4)
Each NPS specimen was tested with the FilmArray RP. The performance of the FilmArray RP for Parainfluenza Viruses 1, 2, and 4 was evaluated by comparing the FilmArray RP test result for each virus with the appropriate comparator/reference methods shown in Table 5.
Table 5. Reference/Comparator Methods Used to Assess FilmArray RP Performance
| Organism/Virus | Reference/Comparator Method(s) |
|---|---|
| Parainfluenza Virus 1 | Viral culture followed by DFA identification1 |
| Parainfluenza Virus 2 | |
| Parainfluenza Virus 4 | 1 PCR test of viral culture with bi-directional sequence confirmation2 |
1 Performance of the FilmArray RP system detecting Parainfluenza Virus 1 and Parainfluenza Virus 2 was compared to viral culture followed by fluorescent antibody identification. "True" Parainfluenza Virus 2, positives, were considered as any sample that tested positive for Parainfluenza Virus I or Parainfluenza virus 2 by viral culture followed by DFA testing. "True" Parainfluenza Virus 1 or Parainfluenza Virus 2 negatives were considered as any sample that tested negative for Parainfluenza Virus 1 or Parainfluenza Virus 2, by viral culture followed by DF A testing.
2 Performance of the FilmArray RP system detecting Parainfluenza Virus 4 was compared to viral culture followed by one analytically validated PCR assay with bi-directional sequence confirmation. The comparator assay was designed to amplify a different sequence from that amplified by the FilmArray assay. "True" Parainfluenza Virus 4 positives were considered as any sample that had bi-directional sequencing data meeting pre-defined quality acceptance criteria that matched Parainfluenza Virus 4 sequences deposited in the National Center for Biotechnology Information (NCBI) GenBank database (www.ncbi.nlm.nih.gov) with acceptable E-values, when tested from viral culture material. "True" Parainfluenza Virus 4 negatives were considered as any sample for which viral culture material tested negative for Parainfluenza Virus 4 by the specific comparator PCR assay.
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A total of 1117 specimens were evaluated for Parainfluenza Viruses 1, 2, and 4 in this study. Clinical sensitivity or positive percent agreement (PPA) was calculated as 100% x (TP / TP + FN). True positive (TP) indicates that both the FilmArray RP and comparator method had a positive result for this specific analyte and false negative (FN) indicates that the FilmArray result was negative while the comparator result was positive. Specificity was calculated as 100% x (TN / TN + FP). True negative (TN) indicates that both the FilmArray RP and the comparator method had negative results and a false positive (FP) indicates that the FilmArray RP result was positive but the comparator results was negative. The exact binomial two-sided 95% confidence interval was calculated. The results are summarized in Table 6.
| Sensitivity | 95% CI | Specificity | 95% CI | |||
|---|---|---|---|---|---|---|
| Parainfluenza Virus 1 | 1/1 | 100% | n/a | 1115/1116a | 99.9% | 99.5 – 100% |
| Parainfluenza Virus 2 | 7/8b,d | 87.4% | 47.4 – 99.7% | 1107/1109c,d | 99.8% | 99.4 – 100% |
| Parainfluenza Virus 4 | 9/9 | 100% | 66.4 -100% | 1107/1108e | 99.9% | 99.5 – 100% |
Table 6. Clinical Sensitivity and Specificity for the FilmArray RP Prospective Clinical Study
a. PIV1 was identified in this specimen using bi-directional sequence analysis.
b. PIV2 Virus was not detected in the single false negative specimen using PCR analysis.
& PIV2 Virus was detected in both false positive specimens using bi-directional sequencing analysis.
Two adjacent specimens (one false negative) may have been switched during the viral culture reference method testing as is evidenced by bi-directional sequence analysis of these specimens.
- A PIV4 Virus was detected in this false positive NPS specimen by bi-directional sequence analysis although it was not detected from viral culture.
A total of 103 co-infections (9% of all analyzed specimens; 103/1117) were detected by FilmArray during this study. The FilmArray detected 6 co-infections involving PIV1, 2, or 4 (Table 7), representing approximately 6% of all co-infections detected (6/103).
| Distinct Co-infection Combinations Detected by FilmArray RP | Total Co-infections | Number of Discrepant Co-infectionsa | Discrepant Analyte(s)a | |
|---|---|---|---|---|
| Analyte 1 | Analyte 2 | |||
| hMPV | PIV 4 | 1 | 1 | hMPV (1) |
| HRV/Entero | PIV 1 | 1 | 1 | PIV 1 (1)b |
| HRV/Enteroa | PIV 2 | 1 | 0 | - |
| HRV/Enteroa | PIV 4 | 3 | 0 | - |
| Total Co-infections | 6 | Total Analytes in 6 Co-infections = 12 |
Table 7. Co-infections Involving Parainfluenza Viruses 1, 2, or 4 as Detected by FilmArray RP.
a. HRV/Entero was not analyzed by a comparator method for the single HRV/Entero + PV2 of the HRV/Entero + PIV4 co-infections due to the HRV/Entero analyte being cleared (K103175) prior to testing of these specimens.
b. PIV1 virus was detected in this specimen using bi-directional sequence analysis.
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Table 8 provides a summary of the FilmArray RP test results for PIV1, PIV2, and PIV4 obtained during this study, including the prevalence of each organism detected by the FilmArray RP System and distribution among the age groups. The majority of Parainfluenza 1, 2, and 4 Viruses were detected in children five years and younger (90%; 19/21). A single PIV1 and a single PIV4 were also detected in older children.
| Analyte | Total (Prevalence) | ≤ 5 years | 6-21 years | 22-49 years | ≥ 50 years |
|---|---|---|---|---|---|
| Parainfluenza Virus 1 | 2 (0.2%) | 1 | 1 | 0 | 0 |
| Parainfluenza Virus 2 | 9 (0.8%) | 9 | 0 | 0 | 0 |
| Parainfluenza Virus 4 | 10 (0.9%) | 9 | 1 | 0 | 0 |
Table 8. Prevalence and Age Distribution of Analytes in the Clinical Study
All three viruses were of low prevalence during the clinical study (0.2 - 0.9%). To supplement the results of the prospective clinical study, an evaluation of preselected archived samples was performed.
Testing of Preselected Archived Specimens
In addition to the prospective clinical study, archived clinical NPS specimens were also tested using the FilmArray RP. The specimens were selected because they had previously tested positive for Parainfluenza Virus 1, 2, or 4, or had been negative for these viruses by previous testing methods. Prior to testing with the FilmArray RP, the presence or absence of the analyte of interest was confirmed in each specimen using analyte specific PCR and bi-directional sequencing. Of 168 specimens, 147 were confirmed to contain the analyte of interest (or lack thereof for negative specimens). The specimens were organized into "test panels" and randomized such that the users testing the samples with the FilmArray RP were blinded as to the expected test result. Each panel contained specimens known to be positive and negative for the specific analyte being evaluated allowing the calculation of a positive percent agreement (PPA) and a negative percent agreement (NPA). A summary of the available demographic information of the tested samples is provided in Table 9 and the results of the FilmArray testing are presented in Table 10.
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| Total Specimens | 147 | |
|---|---|---|
| Sex | Female (%) | 46 (31.3%) |
| Male (%) | 49 (33.3%) | |
| Unknown | 52 (35.4%) | |
| Age | Avg | 10.6 |
| Median | 1.0 | |
| Min | 0.5 | |
| Max | 81.0 | |
| Age Range | ≤5 | 75 (51%) |
| 6-21 | 5 (3.4%) | |
| 22-49 | 5 (3.4%) | |
| ≥50 | 10 (6.8%) | |
| Unknowna | 52 (35.4%) |
Table 9. Demographic Summary of FilmArray RP Archived Specimen Study
4 Demographic information was not provided for specimens from one source. Because the specimens were provided by a pediatric hospital, it is understood that the age range of specimens was from < 1 yrs to 21 yrs.
| Table 10. FilmArray Archived Specimen Performance Data Summary for Parainfluenza Virus 1, 2, and 4 | |||
|---|---|---|---|
| ---------------------------------------------------------------------------------------------------- | -- | -- | -- |
| Positive Percent Agreement (PPA) | Negative Percent Agreement (NPA) | |||||
|---|---|---|---|---|---|---|
| TP/TP+FN | Percent | 95% CI | TN/TN+FP | Percent | 95% CI | |
| PIV1 | 34/35 | 97.1% | 85.1 - 99.9% | 94/94 | 100.0% | 96.2 - 100% |
| PIV2 | 28/28 | 100.0% | 87.6 - 100% | 101/101 | 100.0% | 96.4 - 100% |
| PIV4 | 11/11 | 100.0% | 71.5 - 100% | 6/6 | 100.0% | 54.1 - 100% |
Selected Analytical Studies
Limit of Detection
The analytical sensitivity or Limit of Detection (LoD) for each FilmArray RP analyte (except for Coronavirus HKU1) was determined by testing limiting dilutions of live, quantified viruses. LoD is defined as the lowest concentration at which the analyte is consistently detected (detection in ≥95% of samples tested). Simulated NPS sample matrix (cultured human cells in VTM) was spiked with one or more analytes and at least 20 replicates were tested at the LoD concentration. The LoD for the FilmArray RP analytes Parainfluenza Viruses 1, 2, and 4 are listed in Table 11.
{9}------------------------------------------------
| Organism | Strain | Limit of Detection |
|---|---|---|
| Parainfluenza Virus 1 | Type 1 | 500 TCID50/mL |
| Parainfluenza Virus 2 | Type 2 | 10 TCID50/mL |
| Parainfluenza Virus 4 | Type 4A | 5000 TCID50/mL |
Table 11. LoD for Analytes Detected by FilmArray RP
NOTE: Most analytes were re-grown and quantified in TCID30 (50% Tissue Culture Infectious Dose). The unit TCID30 is a measure of infectivity or cytotoxicity rather than number of organisms or copies of nucleic acid. Variability in TCIDs mL may not accurately reflect differences in the relative sensitivity of detection between different organisms or different strains of the same organism.
Analytical Reactivity (Inclusivity)
The analytical reactivity of the FilmArray RP system assays was evaluated with an inclusivity panel consisting of 108 strains or isolates that represent the genetic, temporal, and geographic diversity of the FilmArray RP analytes. The tested organisms include: 17 Adenovirus, 4 Coronavirus (3 HKU1 and 1 NL63), 10 human Metapneumovirus, 12 Enterovirus, 14 Rhinovirus, 22 Influenza A (including 10 Influenza A/H1, 3 Influenza A/2009 H1 and 9 Influenza A/H3), 11 Influenza B, 3 Parainfluenza Viruses 1, 2 Parainfluenza Viruses 2, 3 Parainfluenza Viruses 3, 4 Parainfluenza Viruses 4 and 6 Respiratory Syncytial Virus. Each organism was initially tested in a simulated NPS sample matrix at or near the system LoD. Higher concentrations were tested if the analyte was not detected at LoD.
Results from inclusivity testing of Parainfluenza Viruses 1, 2, and 4 are presented below. The concentration and multiple of LoD at which each strain was detected by the FilmArray RP system is indicated.
| Type | Strain or Source | Concentration Detected | Multiple of LoDDetected |
|---|---|---|---|
| 1 | Zeptometrix#0810014CF | 500 | 1x |
| 1 | C-35ATCC VR-94 | 500 | 1x |
| 1 | C39BEI NR-3226 | 500 | 1x |
| 2 | Zeptometrix#0810015CF | 10 | 1x |
| 2 | GreerATCC VR-92 | 10 | 1x |
| 4A | M25ATCC VR-1378 | 5000 TCID50/mL | 1x |
| 4A | Zeptometrix#0810060CF | 5000 TCID50/mL | 1x |
| 4B | CH-19503ATCC VR-1377 | 5000 TCID50/mL | 1x |
| 4B | Zeptometrix#08010060BCF | 5000 TCID50/mL | 1x |
Table 12. Results of Inclusivity Testing for Parainfluenza Viruses 1, 2 and 4
{10}------------------------------------------------
Analytical Specificity (Cross-reactivity and Exclusivity)
The potential for cross-reactivity between assays contained in the FilmArray RP system was evaluated by testing simulated NPS samples containing high concentrations of respiratory panel viruses (tens to thousands-fold higher than LoD). No cross-reactivity was observed at the concentrations listed in Error! Reference source not found.13.
| Virus or Bacterium | Type / Strain | Test Concentration | Multiple of LoD |
|---|---|---|---|
| Adenovirus | Serotype 1(Species C) | $1.00x10^5$ TCID50/mL | 333 x |
| Coronavirus | HKU1 - Type BClinical specimen | $2.78x10^9$ copies/mL | 1,463 x |
| NL63NR-470 | $5.67x10^3$ TCID50/mL | 1,134 x | |
| HumanMetapneumovirus | Type A1 - hMPV-16IA10-2003 A1 | $8.17x10^3$ TCID50/mL | 4,085 x |
| Human Rhinovirus /Enterovirus | Echovirus 6 | $3.40x10^6$ TCID50/mL | 113 x |
| Rhinovirus A1 | $5.67x10^3$ TCID50/mL | 5,670 x | |
| Influenza AH1N1 | A/Brisbane/59/07 | $1.00x10^5$ TCID50/mL | 500 x |
| A/New Caledonia/20/99 | $1.00x10^5$ TCID50/mL | 500 x | |
| A/PR/8/34 | $1.00x10^6$ TCID50/mL | 5,000 x | |
| A1/FM/1/47 | $4.70x10^3$ TCID50/mL | 24 x | |
| A/NWS/33 | $4.70x10^3$ TCID50/mL | 24 x | |
| A1/Denver/1/57 | $4.70x10^3$ TCID50/mL | 24 x | |
| A/Solomon Islands/3/2006 | $1.39x10^4$ TCID50/mL | 70 x | |
| A/Weiss/43 | $4.70x10^3$ TCID50/mL | 24 x | |
| A/Mal/302/54 | $1.39x10^4$ TCID50/mL | 70 x | |
| Influenza AH1N1-2009 | A/SwineNY/03/2009 | $4.00x10^5$ TCID50/mL | 4,000 x |
| Influenza AH3N2 | A/Wisconsin/67/2005 | $8.17x10^3$ TCID50/mL | 1634 x |
| A/Victoria/3/75 | $4.70x10^3$ TCID50/mL | 940 x | |
| A/Port Chalmers/1/73 | $5.67x10^3$ TCID50/mL | 1,134 x | |
| A/Aichi/2/68 | $1.00x10^5$ TCID50/mL | 20,000 x | |
| A/Hong Kong/8/68 | $1.00x10^5$ TCID50/mL | 20,000 x | |
| A/Alice | $4.70x10^3$ TCID50/mL | 940 x | |
| A/MRC 2 | $8.17x10^3$ TCID50/mL | 1,634 x | |
| A/Brisbane/10/07 | $8.17x10^3$ TCID50/mL | 1,634 x | |
| Influenza B | B/FL/04/06 | $1.67x10^4$ TCID50/mL | 278 x |
| B/Lee/40 | $8.17x10^3$ TCID50/mL | 136 x | |
| B/Taiwan/2/62 | $5.03x10^4$ TCID50/mL | 838 x | |
| B/GL/1739/54 | $8.17x10^3$ TCID50/mL | 136 x | |
| B/Maryland/1/59 | $8.17x10^3$ TCID50/mL | 136 x | |
| Virus or Bacterium | Type / Strain | Test Concentration | Multiple of LoD |
| B/Florida/07/04 | 1.00x105 TCID50/mL | 1,667 x | |
| B/Malaysia/2506/04 | 5.67x103 TCID50/mL | 95 x | |
| B/Allen/45 | 1.00x105 TCID50/mL | 1,667 x | |
| B/HongKong/5/72 | 8.17x103 TCID50/mL | 136 x | |
| B/Brigit | 3.50x104 TCID50/mL | 583 x | |
| Parainfluenza Virus | Type 1Zeptometrix # 0810014CF | 1.39E+04 TCID50/mL | 28 x |
| Type 2Zeptometrix # 0810015CF | 1.67E+04 TCID50/mL | 1,670 x | |
| Type 3Zeptometrix # 0810016CF | 1.00x105 TCID50/mL | 10,000 x | |
| Type 4Zeptometrix #0810060CF | 5.67x103 TCID50/mLa | 1.13 xa | |
| Respiratory SyncytialVirus | A | 1.39x104 TCID50/mL | 6,950 x |
| B | 2.14x104 TCID50/mL | 10,700 x |
Table 13. Results of Testing for Cross-Reactivity with FilmArray RP Analytes
{11}------------------------------------------------
4 Highest test concentration possible based on the concentration of virus in the stock culture fluid.
The potential for the FilmArray RP system to cross-react with non-FilmArray RP organisms was evaluated by testing an exclusivity panel consisting of 45 bacteria, 10 viruses, and 1 fungus. These organisms were selected based on their relatedness to FilmArray RP analytes, clinical relevance (cause respiratory symptoms or represent nasopharyngeal flora), or high prevalence within the population (e.g. Herpes Simplex Virus). Negative sample matrix was spiked with bacteria or fungi at a concentration of 106 CFU/mL and viruses at a concentration between 104 - 105 TCID30/mL, or the highest concentration possible. The FilmArray RP system did not cross-react with the exclusivity panel organisms listed in Table 25. One measles virus strain was found to contain Adenovirus, which was detected by the FilmArray RP.
| Bacteria | Strain / Isolate | Viruses | Strain / Isolate |
|---|---|---|---|
| Bordetella bronchiseptica | clinical isolate | Bocavirus | Type 1 - Clinical specimen |
| Bordetella holmesii | F061 | Coronavirus 229E | ATCC VR-740 |
| Bordetella parapertussis | A747 | Coronavirus SARS | Zeptometrix -Nucleic Acid |
| Bordetella pertussis | E431 | Coronavirus OC43 | ATCC VR-759 |
| Bordetella pertussis | A639 | Cytomegalovirus (CMV) | AD-169 (VR-538) |
| Bordetella pertussis | ATCC 8467 | Epstein-Barr Virus(EBV) | B95-8 |
| Bordetella pertussis | ATCC 9797 | Herpes Simplex Virus | Type 1 |
| Bordetella pertussis | ATCC 51445 | Measles Virus | Edmonston |
| Bordetella pertussis | ATCC BAA-589 | Measles Virus | Zeptometrix # 0810025CFᵃ |
| Bordetella pertussis | ATCC 9340 | Mumps | Zeptometrix # 0810079CF |
| Bordetella pertussis | ATCC 10380 | FungiStrain / Isolate | |
| Bordetella pertussis | ATCC BAA-1335 | Candida albicans | Zeptometrix #0801504 |
| Bacteria | Strain / Isolate | Viruses | |
| Chlamydia trachomatis | D-UW3 | ||
| Chlamydophila pneumoniae | TW183 | ||
| Corynebacterium diptheriae | ATCC14779 | ||
| Escherichia coli | O157:H7 | ||
| Haemophilus influenzae | MinnA | ||
| Lactobacillus acidophilus | Type strain | ||
| Lactobacillus plantarum | 17-5 | ||
| Legionella longbeacheae | Long Beach 4 | ||
| Legionella micdadei | Tatlock | ||
| Legionella pneumophilia | Philadelphia | ||
| Moraxella catarrhalis | Ne 11 (type strain) | ||
| Mycobacterium tuberculosis | H37Ra-1 | ||
| Mycoplasma hominis | ATCC 23114 | ||
| Mycoplasma genitalium | ATCC 33530 | ||
| Mycoplasma pneumoniae | M129 | ||
| Mycoplasma pneumoniae | ATCC 15531 | ||
| Mycoplasma pneumoniae | ATCC 15293 | ||
| Mycoplasma pneumoniae | ATCC 15377 | ||
| Mycoplasma pneumoniae | ATCC 15492 | ||
| Mycoplasma pneumoniae | ATCC 29085 | ||
| Mycoplasma pneumoniae | ATCC 29342 | ||
| Mycoplasma pneumoniae | ATCC 39505 | ||
| Mycoplasma pneumoniae | ATCC 49894 | ||
| Neisseria elongata | type strain | ||
| Neisseria gonorrhoeae | ATCC 700825 | ||
| Neisseria meningitidis | M1027 (type strain) | ||
| Pseudomonas aeruginosa | Zeptometrix #0801519 | ||
| Staphylococcus aureus | COL | ||
| Staphylococcus epidermidis | RP62A | ||
| Streptococcus pneumoniae | type 59 | ||
| Streptococcus pyogenes | Zeptometrix #0801512 | ||
| Streptococcus salivarius | ATCC 13419 | ||
| Ureaplasma urealyticum | ATCC 27618 |
Table 14. Non-FilmArray RP Exclusivity Panel
{12}------------------------------------------------
*This viral stock produced one false positive Adenovirus result. The false positive was confirmed to be caused by This Yill Stock produced one false positive not due to cross-reactivity between the Adenovirus assay and Measles virus.
{13}------------------------------------------------
Supplemental Analytical Exclusivity Testing for Influenza Strains of Avian Origin:
Additional analytical exclusivity testing was carried out with either live isolates or purified genomic RNA of avian host influenza A strains with the following results:
| Host | Subtype | Isolate / Strain | Test Concentration a | FilmArrayResult |
|---|---|---|---|---|
| A/Japan/305/57 | 3.3 ng RNA | |||
| H2N2 | Kilbourne F38A/Korea/426/68 (HA, NA) x A/PuertoRico/8/34 | 6.3 ng RNA | ||
| Avian | H5N1 | A/Vietnam/1203/2004 R-H5 | N/A b | Influenza A(no subtype detected) |
| Avian | H5N2 | A/duck/Pennsylvania/10218/84 | 2.5 ng RNA | |
| Avian | H5N3 | Kilbourne F181A/duck/Singapore/645/97 | 247 ng RNA | |
| H7N2 | A/NewYork/107/2003 | N/A b | ||
| H7N3 | A/Mallard/Netherlands/12/2000 | N/A b | ||
| H10N7 | A/chicken/Germany/N/49 | 68 ng RNA |
Table 15. Results of Exclusivity Testing of Virus or Nucleic Acid from Culture of Avian Influenza A
4 Purified and quantified RNA from avian influenza cultures was obtained from BEI Resources 6 Stock virus HA titre from CDC = 128. Twenty microliters of virus stock tested.
{14}------------------------------------------------
Precision (Reproducibility)
A multicenter reproducibility study was performed to determine between-site and overall reproducibility of the FilmArray RP system.
Reproducibility testing occurred at three test sites utilizing a panel of twelve simulated NPS specimens spiked with various combinations of live respiratory pathogens (analytes) at three different test levels (high negative (LoD/10), low positive (1X LoD), and medium positive (3X LoD)). On each testing day, two operators at each site tested two aliquots of specimens on two different FilmArray instruments (six specimens per operator per instrument per day). Every specimen was tested four times a day on five days at the three testing sites, for a total of 60 tests per analyte per concentration. A total of 26 lots of reagents and 20 FilmArray instruments were utilized in the reproducibility study. Summary results for each analyte are summarized below.
Results for Parainfluenza Viruses 1, 2, and 4 are summarized below:
| Parainfluenza Virus 1Zeptometrix # Z0810014CFN | #Positive | #Negative | %AgreementwithExpectedResult a | 95%CI | MeanTm | %CVTm | ObservedTm Range | |
|---|---|---|---|---|---|---|---|---|
| Site A | 20/20 | 0/20 | 100% | 83.2% - 100% | 78.86 | 0.26 | 78.42 - 79.25 | |
| Medium Positive(3x LoD) | Site B | 20/20 | 0/20 | 100% | 83.2% - 100% | 79.32 | 0.28 | 78.83 - 79.78 |
| Site C | 19/20 | 1/20 | 95.0% | 75.1% - 99.9% | 78.50 | 0.28 | 78.02 - 78.87 | |
| 1500 TCID50/mL | All Sites | 59/60 | 1/60 | 98.3% | 91.1% - 100% | 78.91 | 0.50 | 78.02 - 79.78 |
| Site A | 20/20 | 0/20 | 100% | 83.2%-100% | 78.60 | 0.31 | 77.99 - 79.05 | |
| Low Positive(1x LoD) | Site B | 20/20 | 0/20 | 100% | 83.2% - 100% | 78.93 | 0.26 | 78.31 - 79.36 |
| Site C | 20/20 | 0/20 | 100% | 83.2% - 100% | 78.50 | 0.38 | 77.90 - 79.16 | |
| 500 TCID50/mL | All Sites | 60/60 | 0/60 | 100% | 94.0% - 100% | 78.67 | 0.40 | 77.90 - 79.36 |
| Site A | 15/20 | 5/20 | 75.0% | 50.1% - 91.3% | 78.54 | 0.25 | 78.10 - 78.94 | |
| High Negativeb(LoD/10) | Site B | 15/20 | 5/20 | 75.0% | 50.1% - 91.3% | 78.94 | 0.25 | 78.52 - 79.36 |
| Site C | 13/20 | 7/20 | 65.0% | 41.0% - 84.6% | 78.41 | 0.35 | 77.87 - 79.02 | |
| 50 TCID50/mL | All Sites | 43/60 | 17/60 | 71.7% | 58.6% - 82.6% | 78.61 | 0.42 | 77.79 - 79.36 |
| Site A | 0/180 | 180/180 | 100.0% | 98.0% - 100% | ||||
| Site B | 0/180 | 180/180 | 100.0% | 98.0% - 100% | ||||
| Negative | Site C | 0/180 | 180/180 | 100.0% | 98.0% - 100% | |||
| All Sites | 0/540 | 540/540 | 100.0% | 99.3% - 100% |
Table 16. Summary of Positive Agreement, Negative Agreement, and Tm Results from Reproducibility Testing of Parainfluenza Virus 1
ª Expected results for the "Medium Positive", the "Low Positive" panel members are positive. Expected result for the "Negative" panel member is negative samples are targeted to be positive 20-80% of the time.
{15}------------------------------------------------
Table 17. Summary of Positive Agreement, Negative Agreement, and Tm Results from Reproducibility Testing of Parainfluenza Virus 2
| Parainfluenza Virus 2Zeptometrix #0810015CF | #Positive | #Negative | %AgreementwithExpectedResult * | 95%CI | MeanTm | %CVTm | ObservedTm Range | |
|---|---|---|---|---|---|---|---|---|
| Medium Positive(3x LoD)30 TCID50/mL | Site A | 20/20 | 0/20 | 100% | 83.2% - 100% | 83.63 | 0.36 | 83.01 - 84.39 |
| Site B | 20/20 | 0/20 | 100% | 83.2% - 100% | 84.06 | 0.40 | 83.44 - 84.79 | |
| Site C | 20/20 | 0/20 | 100% | 83.2% - 100% | 83.88 | 0.32 | 83.13 - 84.28 | |
| All Sites | 60/60 | 0/60 | 100% | 94.0% - 100% | 83.85 | 0.42 | 83.01 - 84.79 | |
| Low Positive(1x LoD)10 TCID50/mL | Site A | 20/20 | 0/20 | 100% | 83.2% - 100% | 83.56 | 0.28 | 82.94 - 84.08 |
| Site B | 20/20 | 0/20 | 100% | 83.2% - 100% | 84.00 | 0.31 | 83.52 - 84.63 | |
| Site C | 20/20 | 0/20 | 100% | 83.2% - 100% | 83.79 | 0.32 | 82.92 - 84.25 | |
| All Sites | 60/60 | 0/60 | 100% | 94.0% - 100% | 83.78 | 0.37 | 82.92 - 84.63 | |
| High Negativeb(LoD/10)1 TCID50/mL | Site A | 12/20 | 8/20 | 60.0% | 36.1% - 80.9% | 83.43 | 0.34 | 82.71 - 83.96 |
| Site B | 12/20 | 8/20 | 60.0% | 36.1% - 80.9% | 83.91 | 0.31 | 83.43 - 84.56 | |
| Site C | 11/20 | 9/20 | 55.0% | 31.5% - 76.9% | 83.71 | 0.36 | 82.91 - 84.30 | |
| All Sites | 35/60 | 25/60 | 58.3% | 44.9% - 70.9% | 83.69 | 0.41 | 82.71 - 84.56 | |
| Negative | Site A | 0/180 | 180/180 | 100.0% | 98.0% - 100% | - | - | - |
| Site B | 0/180 | 180/180 | 100.0% | 98.0% - 100% | - | - | - | |
| Site C | 0/180 | 180/180 | 100.0% | 98.0% - 100% | - | - | - | |
| All Sites | 0/540 | 540/540 | 100.0% | 99.3% - 100% | - | - | - |
- Expected results for the "Medium Positive", and the "High Negative" pand members are positive. Expected result
for the "Negative" panel member is negative samples are targ
| Table 18. Summary of Positive Agreement, Negative Agreement, and Tm Results from Reproducibility Testing of | |
|---|---|
| Parainfluenza Virus 4 |
| Parainfluenza Virus 4aZeptometrix #0810060CF | # Positive | # Negative | % AgreementwithExpectedResulta | 95% CI | MeanTm | %CVTm | ObservedTm Range |
|---|---|---|---|---|---|---|---|
| Medium Positive(3x LoD)15,000 TCID50/mL | Site A20/20 | 0/20 | 100% | 83.2% - 100% | 77.70 | 0.30 | 77.36 - 78.10 |
| Site B20/20 | 0/20 | 100% | 83.2% - 100% | 78.09 | 0.56 | 77.48 - 78.74 | |
| Site C20/20 | 0/20 | 100% | 83.2% - 100% | 77.73 | 0.40 | 77.05 - 78.21 | |
| All Sites60/60 | 0/60 | 100% | 94.0% - 100% | 77.82 | 0.47 | 77.05 - 78.74 | |
| Low Positive(1x LoD)5,000 TCID50/mL | Site A20/20 | 0/20 | 100% | 83.2% - 100% | 77.11 | 0.28 | 76.64 - 77.68 |
| Site B20/20 | 0/20 | 100% | 83.2% - 100% | 77.65 | 0.41 | 76.73 - 78.71 | |
| Site C20/20 | 0/20 | 100% | 83.2% - 100% | 77.23 | 0.38 | 76.81 - 78.20 | |
| All Sites60/60 | 0/60 | 100% | 94.0% - 100% | 77.33 | 0.46 | 76.64 - 78.71 |
{16}------------------------------------------------
| Parainfluenza Virus 4aZeptometrix #0810060CF | #Positive | #Negative | %AgreementwithExpectedResulta | 95%CI | MeanTm | %CVTm | ObservedTm Range | |
|---|---|---|---|---|---|---|---|---|
| High Negativeb(LoD/10)500 TCID50/mL | Site A | 4/20 | 16/20 | 20.0% | 5.7% - 43.7% | 77.07 | 0.26 | 76.63 - 77.58 |
| Site B | 5/20 | 15/20 | 25.0% | 8.7% - 49.1% | 77.59 | 0.27 | 77.05 - 78.00 | |
| Site C | 11/20 | 9/20 | 55.0% | 31.5% - 76.9% | 77.24 | 0.30 | 76.62 - 77.84 | |
| All Sites | 20/60 | 40/60 | 33.3% | 21.7% - 46.7% | 77.29 | 0.40 | 76.62 - 78.00 | |
| Negative | Site A | 0/180 | 180/180 | 100.0% | 98.0% - 100% | |||
| Site B | 0/180 | 180/180 | 100.0% | 98.0% - 100% | ||||
| Site C | 0/180 | 180/180 | 100.0% | 98.0% - 100% | ||||
| All Sites | 0/540 | 540/540 | 100.0% | 99.3% - 100% |
ª Expected results for the "Medium Positive", the "Low Positive", and members are positive. Expected result
for the "Negative" panel member is negative samples are targeted t
Precision (Repeatability)
The repeatability of the FilmArray RP System results was evaluated by repeated testing of the same 12 specimens tested in the reproducibility study while minimizing as many sources of variability as possible. The in-house repeatability testing was performed at Site C over the course of 12 testing days for a total of 48 test results per specimen. On each day, all 12 specimens were tested 4 times by two operators on two FilmArray instruments.
| Table 19. Summary of Positive Agreement Results for Repeatability Testing of Parainfluenza Viruses 1, 2 and 4. | |
|---|---|
| Comments on an an experience and | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
| Spiked Organism | Moderate Positive(3x LoD) | Low Positive(1x LoD) | High Negative(0.1x LoD) | |||
|---|---|---|---|---|---|---|
| # Positive /Total | % PositiveResults | # Positive /Total | % PositiveResults | # Positive /Total | % PositiveResults | |
| Parainfluenza Virus 1 | 47/48 | 97.9% | 48/48 | 100.0% | 32/48 | 66.7% |
| Parainfluenza Virus 2 | 48/48 | 100.0% | 47/48 | 97.9% | 27/48 | 56.3% |
| Parainfluenza Virus 4 | 48/48 | 100.0% | 48/48 | 100.0% | 26/48 | 54.2% |
{17}------------------------------------------------
Interference
Substances that could be present in NPS samples or introduced during sample handling were evaluated for their potential to interfere with assay performance. Four different organism mixes containing FilmArray RP analytes were spiked into a simulated NPS (sNPS) sample matrix (human epithelial cells in VTM) at 5x their respective LoDs. The 5x LoD organism concentration was chosen to be near the analyte LoD but also to provide consistent results for sample-to-sample comparison. Each FilmArray RP analyte was tested in the presence of each potentially interfering substance listed in Table 20. None of the substances tested were found to compete or interfere with the control or analyte assays in the FilmArray RP.
| Endogenous Substances | Competitive / Interfering Microorganisms |
|---|---|
| Human Blood (with Na Citrate) (1% v/v) | Respiratory Syncytial Virus A $2.8 x 10^4$ TCID₅₀/mL |
| Mucin (bovine submaxillary gland) (1% v/v) | Human Rhinovirus $1.1 x 10^4$ TCID₅₀/mL |
| Human Genomic DNA: 0.2 ng/µL | Influenza A 2009 H1N1 $1.0 x 10^5$ TCID₅₀/mL |
| 2 ng/µL | Staphylococcus aureus $1.0 x 10^6$ CFU/mL |
| 20 ng/µL | Neisseria meningitides $1.0 x 10^6$ CFU/mL |
| Corynebacterium diptheriae $1.0 x 10^6$ CFU/mL | |
| Exogenous Substances | |
| Saline Nasal Spray with Preservatives (1% v/v) | Analgesic ointment (1% w/v) |
| Nasal Decongestant Spray (Oxymetazoline HCl) (1%v/v) | Petroleum Jelly (1% w/v) |
| Tobramycin (0.6 mg/mL) | Smokeless Tobacco (1% w/v) |
| Mupirocin (2% w/v) | |
| Technique Specific Substances | |
| Laboratory Reagents: | Viral Transport Media: Swabs: |
| Bleach (1%, 2%, 5% v/v) | Remel M4Copan 168C (rayon / twisted aluminum shaft) |
| Disinfecting wipes | Remel M4-RTCopan FloQ (flocked nylon / plastic shaft) |
| Ethanol (7% v/v) | Remel M5Copan 175KS01 (polyester / aluminum shaft) |
| DNAzap (1% v/v) | Remel M6Millipore 519CS01M (flocked nylon / plastic shaft) |
| RNaseOut (1% v/v) | Copan UTM |
| Table 20. List of Potentially Interfering Substances Evaluated | ||||
|---|---|---|---|---|
| -- | ---------------------------------------------------------------- | -- | -- | -- |
Evaluation of the FilmArray RP system was not performed using clinical NPS specimens obtained from individuals who had recently received the FluMist® nasal influenza vaccine (MedImmune). However, analytical testing was performed with simulated samples containing various concentrations of the 2009-2010 formulation of the vaccine material. The FilmArray RP assays react with the Influenza A H1, Influenza A H3 and Influenza B viral material contained in the vaccine. No cross-reactivity was observed with other, non-influenza FilmArray RP assays.
{18}------------------------------------------------
Image /page/18/Picture/0 description: The image shows the seal of the Department of Health & Human Services (HHS) of the United States. The seal features the department's name arranged in a circular pattern around a central emblem. The emblem consists of a stylized caduceus, a symbol often associated with medicine and healthcare, with a modern and abstract design.
DEPARTMENT OF HEALTH & HUMAN SERVICES
Public Health Service
Food and Drug Administration 10903 New Hampshire Avenue Silver Spring, MD 20993
Idaho Technology Inc. c/o Beth Lingenfelter 390 Wakara Way Salt Lake City, UT 84108
Re: K110764
Trade/Device Name: FilmArray Respiratory Panel (RP) System Regulation Number: 21 CFR 866.3980 Regulation Name: Respiratory Viral Panel Multiplex Nucleic Acid Assay Regulatory Class: Class II Product Code: OCC, OEM, OOU, OEP, OTG, NXD, OOI Dated: March 17, 2011 Received: March 18, 2011
Dear Ms. Lingenfelter:
We have reviewed your Section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (Act) that do not require approval of a provisions of the Pederal Food, Drug,
You may, therefore, market the del You may, therefore, market the device, subject to the general controls provisions of the Act. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeline . quilibitions against misbranding and adulteration.
If your device is classified (see above) into class II (Special Controls), it may be subject to such additional controls. Existing major regulations affecting your device can be found in Title 21, Code of Federal Regulations (CFR), Parts 800 to 895. In addition, FDA may publish further announcements concerning your device in the Federal Register.
Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Parts 801 and 809); medical device reporting (reporting of medical device-related adverse events) (21 CFR 803); and good manufacturing practice requirements as set forth in the quality systems (OS) regulation (21 CFR Part 820). This letter will allow you to begin marketing your device as described in your Section 510(k) premarket notification. The FDA finding of substantial equivalence of your device to a legally marketed
APR 27 2011
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predicate device results in a classification for your device and thus, permits your device to proceed to the market.
If you desire specific advice for your device on our labeling regulation (21 CFR Parts 801 and 809), please contact the Office of In Vitro Diagnostic Device Evaluation and Safety at (301) 796-5450. Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21 CFR Part 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to
http://www.fda.gov/MedicalDevices/Safety/ReportaProblem/default.htm for the CDRH's Office of Surveillance and Biometrics/Division of Postmarket Surveillance.
You may obtain other general information on your responsibilities under the Act from the Division of Small Manufacturers, International and Consumer Assistance at its tolli the (800) 638-2041 or (301) 796-7100 or at its Internet address http://www.fda.gov/cdrh/industry/support/index.html.
Sincerely yours.
Veils. Hyr
Sally A. Hojvat, M.Sc., Ph.D. Director, Division of Microbiology Devices Office of In Vitro Diagnostic Device Evaluation and Safety Center for Devices and Radiological Health
Enclosure
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Indications for Use
510(k) Number: K110764 Device Name: FilmArray Respiratory Panel (RP) System
Indications for Use:
FilmArray Respiratory Panel (RP) is a multiplexed nucleic acid test intended for use with the FilmArray instrument for the simultaneous qualitative detection and identification of multiple respiratory viral nucleic acids in nasopharyngeal swabs (NPS) obtained from individuals suspected of respiratory tract infections. The following virus types and subtypes are identified using the FilmArray RP: Adenovirus, Coronavirus HKU1, Coronavirus NL63, Human Metapneumovirus, Influenza A, Influenza A subtype H1, Influenza A subtype H3, Influenza A subtype 2009 H1, Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2, Parainfluenza Virus 3, Parainfluenza Virus 4, Rhinovirus/Enterovirus, and Respiratory Syncytial Virus. The detection and identification of specific viral nucleic acids from individuals exhibiting signs and symptoms of a respiratory infection aids in the diagnosis of respiratory viral infection if used in conjunction with other clinical and epidemiological information. Negative results do not preclude respiratory viral infection and should not be used as the sole basis for diagnosis, treatment or other management decisions. Positive results do not rule out bacterial infection or co-infection with other organisms. The agent detected may not be the definite cause of disease. The use of additional laboratory testing (e.g. bacterial and viral culture, immunofluorescence, and radiography) and clinical presentation must be taken into consideration in order to obtain the final diagnosis of respiratory infection.
Due to seasonal prevalence, performance characteristics for Influenza A/H1, Influenza A/H3, Influenza A/2009 H1, Influenza B, Parainfluenza Virus 1, Parainfluenza Virus 2, and Parainfluenza Virus 4 were established primarily with retrospective clinical specimens.
Due to the genetic similarity between human Rhinovirus and Enterovirus, the FilmArray RP cannot reliably differentiate them. A positive FilmArray RP Rhinovirus/Enterovirus result should be followed-up using an alternate method (e.g. cell culture or sequence analysis).
The FilmArray RP detects Adenovirus species C serotype 2 and serotype 6 with reduced sensitivity. It is recommended that specimens found to be negative for Adenovirus after examination using FilmArray RP be confirmed by an alternate method (e.g. FDA cleared molecular test or cell culture).
Performance characteristics for influenza A were established when influenza A/2009 H1N1, A/H1, and A/H3 were the predominant influenza A viruses in circulation. When other influenza A viruses are emerging, performance characteristics may vary. If infection with a novel influenza A virus is suspected based on current clinical and epidemiological screening criteria recommended by public health authorities, specimens should be collected with appropriate infection control precautions for novel virulent influenza viruses and sent to state or local health
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departments for testing. Viral culture should not be attempted in these cases unless a BSL 3+ facility is available to receive and culture specimens.
Prescription Use X (Part 21 CFR 801 Subpart D)
AND/OR
Over-the-Counter Use (21 CFR 801 Subpart C)
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Concurrence of CDRH, Office of In Vitro Diagnostic Device Evaluation and Safety (OIVD)
Vali Am
Division Sian-Off
Office of In Vitro Diagnostic Device Evaluation and Safety
510(k) K110764
§ 866.3980 Respiratory viral panel multiplex nucleic acid assay.
(a)
Identification. A respiratory viral panel multiplex nucleic acid assay is a qualitative in vitro diagnostic device intended to simultaneously detect and identify multiple viral nucleic acids extracted from human respiratory specimens or viral culture. The detection and identification of a specific viral nucleic acid from individuals exhibiting signs and symptoms of respiratory infection aids in the diagnosis of respiratory viral infection when used in conjunction with other clinical and laboratory findings. The device is intended for detection and identification of a combination of the following viruses:(1) Influenza A and Influenza B;
(2) Influenza A subtype H1 and Influenza A subtype H3;
(3) Respiratory Syncytial Virus subtype A and Respiratory Syncytial Virus subtype B;
(4) Parainfluenza 1, Parainfluenza 2, and Parainfluenza 3 virus;
(5) Human Metapneumovirus;
(6) Rhinovirus; and
(7) Adenovirus.
(b)
Classification. Class II (special controls). The special controls are:(1) FDA's guidance document entitled “Class II Special Controls Guidance Document: Respiratory Viral Panel Multiplex Nucleic Acid Assay;”
(2) For a device that detects and identifies Human Metapneumovirus, FDA's guidance document entitled “Class II Special Controls Guidance Document: Testing for Human Metapneumovirus (hMPV) Using Nucleic Acid Assays;” and
(3) For a device that detects and differentiates Influenza A subtype H1 and subtype H3, FDA's guidance document entitled “Class II Special Controls Guidance Document: Testing for Detection and Differentiation of Influenza A Virus Subtypes Using Multiplex Nucleic Acid Assays.” See § 866.1(e) for the availability of these guidance documents.