(501 days)
The BOND MMR Antibody Panel is intended to be used for the qualitative identification by light microscopy of human mismatch repair (MMR) proteins MLH1, MSH2, MSH6 and PMS2 in formalin-fixed, paraffin-embedded (FFPE) colorectal cancer (CRC) tissue sections by immunohistochemical staining. The BOND MMR Antibody Panel includes BOND Ready-to-Use Primary Antibody MLH1 (Mismatch Repair Protein) (ES05), BOND Ready-to-Use Primary Antibody MSH2 (Mismatch Repair Protein) (79H11), BOND Ready-to-Use Primary Antibody MSH6 (Mismatch Repair Protein) (EP49) and BOND Ready-to-Use Primary Antibody PMS2 (Mismatch Repair Protein) (EP51). The BOND MMR Antibody Panel is intended for use on the BOND-III or BOND-MAX fully automated systems with BOND Polymer Refine Detection.
The BOND MMR Antibody Panel is indicated for the detection of MMR protein deficiency as an aid in the identification of potential hereditary nonpolyposis colorectal cancer (HNPCC)/Lynch Syndrome in patients diagnosed with CRC. Patients with "MMR Loss" results should receive additional diagnostic testing consistent with clinical practice guidelines for diagnosis of Lynch syndrome. The BOND MMR Antibody Panel is not intended for use in indications other than CRC. This test should not be used for diagnosis of CRC.
The clinical interpretation of any staining or its absence when using the BOND MMR Antibody Panel should be complemented by morphological studies and proper controls and should be evaluated within the context of the patient's clinical history and other diagnostic tests by a qualified pathologist.
The clinical performance of this device to guide treatment of MMR deficient patients has not been established.
The BOND MMR Antibody Panel [subject device] consists of the following BOND Ready-to-Use (RTU) Primary Antibody (PA) products:
- MLH1 (Mismatch Repair Protein) (ES05) (PA0988-U) .
- MSH2 (Mismatch Repair Protein) (79H11) (PA0989-U) .
- . MSH6 (Mismatch Repair Protein) (EP49) (PA0990-U)
- . PMS2 (Mismatch Repair Protein) (EP51) (PA0991-U)
The BOND MMR Antibody Panel is intended for use on the BOND-III or BOND-MAX fully automated systems with BOND Polymer Refine Detection (DS9800). The BOND MMR Antibody Panel is indicated for the detection of mismatch repair protein deficiency as an aid in the identification of potential Hereditary Non-Polyposis Colorectal Cancer (HPNCC)/Lynch Syndrome in patients diagnosed with CRC.
MLH1 (Mismatch Repair Protein) (ES05) is a mouse anti-human monoclonal antibody produced as a tissue culture supernatant, and supplied in Tris buffered saline with carrier protein, containing 0.35 % ProClin™ 950 as a preservative and in a total volume of 7 mL. The antibody is optimally diluted for use on the automated BOND-MAX or BOND-III instrument staining platforms in combination with BOND Polymer Refine Detection (DS9800).
MSH2 (Mismatch Repair Protein) (79H11) is a mouse anti-human monoclonal antibody produced as a tissue culture supernatant, and supplied in Tris buffered saline with carrier protein, containing 0.35 % ProClin™ 950 as a preservative and in a total volume of 7ml. The antibody is optimally diluted for use on the automated BOND-MAX or BOND-III instrument staining platforms in combination with BOND Polymer Refine Detection (DS9800).
MSH6 (Mismatch Repair Protein) (EP49) is a rabbit anti-human monoclonal antibody produced as an affinity-purified tissue culture supernatant, and supplied in Tris buffered saline with carrier protein, containing 0.35 % ProClin™ 950 as a preservative and in a total volume of 7ml. The antibody is optimally diluted for use on the automated BOND-MAX or BOND-III instrument staining platforms in combination with BOND Polymer Refine Detection (DS9800).
PMS2 (Mismatch Repair Protein) (EP51) is a rabbit anti-human monoclonal antibody produced as an affinity purified tissue culture supernatant, and supplied in Tris buffered saline with carrier protein, containing 0.35 % ProClin™ 950 as a preservative and in a total volume of 7ml. The antibody is optimally diluted for use on the automated BOND-MAX or BOND-III instrument staining platforms in combination with BOND Polymer Refine Detection (DS9800).
Instrument and Software: The BOND-MAX and BOND-III instruments are fully automated slide stainers that perform automated deparaffinization (dewaxing), antigen retrieval, immunohistochemistry (IHC) staining/in situ hybridization (ISH) staining, and counterstaining. The major components of the BOND staining platforms are the processing module, computer (BOND controller), handheld ID scanner, and slide label printer. The BOND staining platforms are composed of a number of discrete software components including the BOND application software, BOND instrument/processing module software, BOND service software, and Laboratory interface system - integration package (LIS-IP).
Here's a breakdown of the acceptance criteria and the study that proves the device meets them, based on the provided text:
Device: BOND MMR Antibody Panel
Intended Use: Qualitative identification by light microscopy of human mismatch repair (MMR) proteins (MLH1, MSH2, MSH6, PMS2) in formalin-fixed, paraffin-embedded (FFPE) colorectal cancer (CRC) tissue sections by immunohistochemical staining. It aids in identifying potential hereditary nonpolyposis colorectal cancer (HNPCC)/Lynch Syndrome in CRC patients.
1. Table of Acceptance Criteria and Reported Device Performance
The document doesn't explicitly state "acceptance criteria" in a single, consolidated table. However, the precision studies reference "pre-specified acceptance criteria of ≥85% lower bound confidence interval." The clinical performance section states the point estimates of agreement, which implicitly serve as performance benchmarks.
| Criterion Type | Specific Criterion (Implicit Acceptance Threshold) | Reported Device Performance (with 95% Confidence Interval) |
|---|---|---|
| Precision (Repeatability) | Lower bound 95% CI ≥ 85% for OPA, PPA, NPA | Intra-run: |
| Anti-MLH1: OPA 100% [94.0%-100%] (BOND-III & BOND-MAX) | ||
| Anti-MSH2: OPA 98.1% [90.2%-99.7%] (BOND-III), OPA 100% [93.4%-100%] (BOND-MAX) | ||
| Anti-MSH6: OPA 100% [94.0%-100%] (BOND-III & BOND-MAX) | ||
| Anti-PMS2: OPA 100% [94.0%-100%] (BOND-III), OPA 98.3% [91.1%-99.7%] (BOND-MAX) | ||
| Between-day: | ||
| All antibodies on both instruments generally met 100% OPA, with some slight variations (e.g., Anti-MSH2 on BOND-III: OPA 98.8% [95.6%-99.7%]; Anti-MSH6 on BOND-III: OPA 99.4% [96.9%-99.9%]) - all met ≥85% lower bound CI. | ||
| Between-lot: | ||
| Similar to Between-day, all results generally met 100% OPA, with some slight variations (e.g., Anti-MSH2 on BOND-III: OPA 98.8% [95.6%-99.7%]; Anti-PMS2 on BOND-III: OPA 98.9% [96.0%-99.7%]) - all met ≥85% lower bound CI. | ||
| Reproducibility (Pathologist & Laboratory) | Lower bound 95% CI ≥ 85% for OPA, PPA, NPA | Intra-pathologist: OPA 99.3% - 100%, PPA 99.2% - 100% |
| Inter-pathologist: OPA 99.3% - 100%, PPA 99.2% - 100% | ||
| Inter-instrument: OPA 98.9% - 100%, PPA 98.8% - 100%, NPA 93.3% - 100% | ||
| Inter-laboratory: OPA 98.9% - 100%, PPA 98.8% - 100% | ||
| Inter-day and Inter-site (BOND-III only): Overall OPA 94.4% to 100%, PPA 91.7% to 100%, NPA 97.8% to 100%. One exception for MSH6 PPA (91.7% [81.9%-96.4%]) was within specification due to a specific challenging case. All other lower bounds of 95% CI were ≥ 85%. | ||
| Clinical Performance (Agreement with DNA Sequencing Panel) | (Implicitly, high agreement is expected given the predicate device comparison) | Combined Cohort: PPA 93.3% [84.1%-97.4%], NPA 95.9% [88.6%-98.6%], OPA 94.7% [89.5%-97.4%] |
| Sequential Cohort: PPA 83.3% [60.8%-94.2%], NPA 98.5% [92.0%-99.7%], OPA 95.3% [88.5%-98.2%] | ||
| Enrichment Cohort: PPA 97.6% [87.7%-99.6%], NPA 66.7% [30.0%-90.3%], OPA 93.8% [83.2%-97.9%] | ||
| Individual Protein Agreement (Combined Cohort): | ||
| Anti-MLH1: PPA 89.2%, NPA 99.0%, OPA 96.2% | ||
| Anti-MSH2: PPA 92.3%, NPA 99.2%, OPA 98.5% | ||
| Anti-MSH6: PPA 65.0%, NPA 99.1%, OPA 94.0% | ||
| Anti-PMS2: PPA 97.5%, NPA 95.7%, OPA 96.2% |
2. Sample Size Used for the Test Set and Data Provenance
Test Set Sample Size:
- Precision Studies (Intra-run, Between-day, Between-lot):
- 40 FFPE CRC tissue cases (10 per MMR protein: 5 protein deficient, 5 intact) - used for intra-run, between-day, between-lot precision.
- One MSH2 case was excluded in some analyses due to insufficient tumor.
- Reproducibility Studies (Pathologist & Laboratory):
- 30 FFPE CRC tissue cases (specific breakdown for each MMR protein provided in Table 4, e.g., MLH1: 25 intact, 5 loss).
- Inter-day and Inter-site Reproducibility (BOND-III):
- 24 FFPE CRC tissue cases (3 intact and 3 loss cases for each of the 4 MMR proteins).
- Clinical Performance Study:
- Initially, 155 cases procured.
- 143 cases were eligible and tested by both methods (BOND MMR Antibody Panel and DNA sequencing panel).
- 133 cases had valid results by both methods and were evaluable for agreement analysis. These comprised:
- Sequential cohort: 94 cases (unknown MMR status, sequentially obtained from a single US site).
- Enrichment cohort: 49 cases (known MMR protein deficiencies from multiple sites).
Data Provenance:
- Clinical Performance Study: Specimens for the sequential cohort were obtained from a single US site. The enrichment cohort specimens were from multiple sites. The text indicates "Eligible remnant FFPE CRC tissues ("cases") were procured." This suggests the data are retrospective, using banked FFPE tissue samples.
3. Number of Experts Used to Establish the Ground Truth for the Test Set and Their Qualifications
Precision & Reproducibility Studies:
- Intra-run, Between-day, Between-lot Precision: A single pathologist read and scored all stained slides. No specific qualifications are provided for this pathologist, other than being "a single pathologist."
- Intra- and Inter-Pathologist Reproducibility: 3 pathologists read and scored the 30 cases. No specific qualifications beyond "pathologist" are provided.
- Inter-Instrument Reproducibility: One pathologist evaluated the cases. No specific qualifications are provided.
- Inter-Laboratory Reproducibility: One pathologist at each of the 3 sites independently evaluated each case. No specific qualifications beyond "pathologist" are provided.
- Inter-day and Inter-site Reproducibility (BOND-III): One pathologist at each of the 3 sites read and scored the stained slides. No specific qualifications beyond "pathologist" are provided.
Clinical Performance Study:
- "One pathologist at the testing site read and scored BOND MMR Antibody Panel stained slides in accordance with the scoring guidance." No specific qualifications are provided for this pathologist.
- For the ground truth (DNA sequencing panel results): The ground truth was established by assessing "pathogenic mutation(s) likely to affect MMR protein expression in CRC" using a DNA sequencing panel. This is an objective molecular test, not dependent on expert visual interpretation.
4. Adjudication Method for the Test Set
Precision & Reproducibility Studies:
- For precision studies where a single pathologist scored, "majority score" was used as the reference where multiple replicates were performed. For reproducibility studies involving multiple pathologists or sites, concordance between pathologists/sites was evaluated. No explicit adjudication process like "2+1" or "3+1" is described for resolving discrepancies to establish a single ground truth from pathologist reads for performance metrics. Instead, the studies assess agreement between readers and sites. The "majority score" used in the precision studies implied that if there were discordant reads, the majority would determine the "true" result for that specific replicate.
Clinical Performance Study:
- The ground truth for the clinical performance study was the DNA sequencing panel result. The pathologist's interpretation of the BOND MMR Antibody Panel staining was compared against this molecular ground truth. Therefore, no pathologist adjudication of the test device results was used to establish the ground truth for this comparison.
5. Multi-Reader Multi-Case (MRMC) Comparative Effectiveness Study
- Was an MRMC study done? Yes, aspects of MRMC designs are present in the reproducibility studies, particularly the "Intra- and Inter-Pathologist Reproducibility" and "Inter-Laboratory Reproducibility" sections. These studies involved multiple pathologists reading multiple cases to assess the reproducibility of the device's output.
- Effect size of human reader improvement with AI vs. without AI assistance: Not applicable. This device is an immunohistochemistry (IHC) panel, interpreted by pathologists using light microscopy. It is not an AI-assisted diagnostic device, nor does the study evaluate human reader performance with or without AI assistance. The study focuses on the reproducibility and clinical validity of the IHC panel itself.
6. Standalone Performance Study (Algorithm Only)
- This question is not applicable as the device is an Immunohistochemistry (IHC) panel, not an algorithm or AI system. Its performance is intrinsically tied to human interpretation (by a pathologist). The studies evaluate the performance of the IHC panel as interpreted by pathologists.
7. Type of Ground Truth Used
- Precision/Reproducibility Studies: The "ground truth" for evaluating these studies was largely based on the expected protein expression status of the selected CRC tissue cases (e.g., "5 cases being protein deficient and 5 cases expressing intact protein"). For calculating agreements over repeat measurements, often a "majority score" from multiple reads or comparison to a baseline read was used as the reference.
- Clinical Performance Study: The ground truth was established by a molecular test: a DNA sequencing panel validated for detecting pathogenic mutations likely to affect MMR protein expression in CRC. This provides an objective measure of MMR gene status, which is then correlated with the protein expression detected by the IHC panel.
8. Sample Size for the Training Set
The document describes pre-market testing and performance characterization, not the development or training of an AI algorithm. Therefore, there is no mention of a "training set" sample size for an algorithm. The "Immunoreactivity" section (Table 15-17) shows the testing of the antibodies across a wide variety of normal, neoplastic, and colorectal cancer tissues (dozens to hundreds of cases across various tissue types) to characterize their expected staining patterns, which could be considered part of the development/characterization phase, but not an algorithmic "training set."
9. How the Ground Truth for the Training Set Was Established
As there is no training set for an AI algorithm mentioned in the document (the device is an IHC panel), this question is not applicable. The "Immunoreactivity" section's characterization of normal and tumor tissue staining patterns served as the basis for understanding expected reactivity, likely through known biological knowledge and expert pathological evaluation.
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February 21, 2023
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Leica Biosystems Newcastle, Ltd. Christine Kishi Staff Regulatory Affairs Specialist Balliol Business Park West, Benton Lane Newcastle Upon Tyne, NE12 8EW United Kingdom
Re: K213348
Trade/Device Name: BOND MMR Antibody Panel Regulation Number: 21 CFR 864.1866 Regulation Name: Lynch Syndrome Test Systems Regulatory Class: Class II Product Code: PZJ Dated: November 10, 2022 Received: November 23, 2022
Dear Christine Kishi:
We have reviewed your Section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. Although this letter refers to your product as a device, please be aware that some cleared products may instead be combination products. The 510(k) Premarket Notification Database located at https://www.accessdata.fda.gov/scripts/cdrh/cfdocs/cfpmn/pmn.cfm identifies combination product submissions. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration. Please note: CDRH does not evaluate information related to contract liability warranties. We remind you, however, that device labeling must be truthful and not misleading.
If your device is classified (see above) into either class II (Special Controls) or class III (PMA), it may be subject to additional controls. Existing major regulations affecting your device can be found in the Code of Federal Regulations, Title 21, Parts 800 to 898. In addition, FDA may publish further announcements concerning your device in the Federal Register.
Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Part 801 and Part 809); medical device reporting of medical device-related adverse events) (21 CFR
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- for devices or postmarketing safety reporting (21 CFR 4, Subpart B) for combination products (see https://www.fda.gov/combination-products/guidance-regulatory-information/postmarketing-safety-reportingcombination-products); good manufacturing practice requirements as set forth in the quality systems (QS) regulation (21 CFR Part 820) for devices or current good manufacturing practices (21 CFR 4, Subpart A) for combination products; and, if applicable, the electronic product radiation control provisions (Sections 531-542 of the Act); 21 CFR 1000-1050.
Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21 CFR Part 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to https://www.fda.gov/medical-device-safety/medical-device-reportingmdr-how-report-medical-device-problems.
For comprehensive regulatory information about medical devices and radiation-emitting products, including information about labeling regulations, please see Device Advice (https://www.fda.gov/medicaldevices/device-advice-comprehensive-regulatory-assistance) and CDRH Learn (https://www.fda.gov/training-and-continuing-education/cdrh-learn). Additionally, you may contact the Division of Industry and Consumer Education (DICE) to ask a question about a specific regulatory topic. See the DICE website (https://www.fda.gov/medical-device-advice-comprehensive-regulatoryassistance/contact-us-division-industry-and-consumer-education-dice) for more information or contact DICE by email (DICE@fda.hhs.gov) or phone (1-800-638-2041 or 301-796-7100).
Sincerely.
Zivana Tezak-fragale -S
Zivana Tezak, PhD Branch Chief Division of Molecular Genetics and Pathology OHT7: Office of In Vitro Diagnostics Office of Product Evaluation and Quality Center for Devices and Radiological Health
Enclosure
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Indications for Use
510(k) Number (if known) K213348
Device Name BOND MMR Antibody Panel
Indications for Use (Describe)
The BOND MMR Antibody Panel is intended to be used for the qualitative identification by light microscopy of human mismatch repair (MMR) proteins MLH1, MSH2, MSH6 and PMS2 in formalin-fixed, paraffin-embedded (FFPE) colorectal cancer (CRC) tissue sections by immunohistochemical staining. The BOND MMR Antibody Panel includes BOND Ready-to-Use Primary Antibody MLH1 (Mismatch Repair Protein) (ES05), BOND Ready-to-Use Primary Antibody MSH2 (Mismatch Repair Protein) (79H11), BOND Ready-to-Use Primary Antibody MSH6 (Mismatch Repair Protein) (EP49) and BOND Ready-to-Use Primary Antibody PMS2 (Mismatch Repair Protein) (EP51). The BOND MMR Antibody Panel is intended for use on the BOND-III or BOND-MAX fully automated systems with BOND Polymer Refine Detection.
The BOND MMR Antibody Panel is indicated for the detection of MMR protein deficiency as an aid in the identification of potential hereditary nonpolyposis colorectal cancer (HNPCC)/Lynch Syndrome in patients diagnosed with CRC. Patients with "MMR Loss" results should receive additional diagnostic testing consistent with clinical practice guidelines for diagnosis of Lynch syndrome. The BOND MMR Antibody Panel is not intended for use in indications other than CRC. This test should not be used for diagnosis of CRC.
The clinical interpretation of any staining or its absence when using the BOND MMR Antibody Panel should be complemented by morphological studies and proper controls and should be evaluated within the context of the patient's clinical history and other diagnostic tests by a qualified pathologist.
The clinical performance of this device to guide treatment of MMR deficient patients has not been established.
| Type of Use ( Select one or both, as applicable ) |
|---|
| ☒ Prescription Use (Part 21 CFR 801 Subpart D) ☐ Over-The-Counter Use (21 CFR 801 Subpart C) |
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Image /page/3/Picture/1 description: The image shows the logo for Leica Biosystems. The word "Leica" is written in a stylized red font. Below the word "Leica" is the word "BIOSYSTEMS" written in a smaller, black, sans-serif font. The logo is simple and modern.
510(k) Summary
COMPANY AND CONTACT INFORMATION 1.
| Company Name: | Leica Biosystems Newcastle Ltd. |
|---|---|
| Address: | Balliol Business ParkBenton LaneNewcastle upon TyneUKNE12 8EW |
| Telephone: | (+44)-191-215-0567 |
| Contact Person: | Christine KishiStaff Regulatory Affairs Specialist |
| Date of Submission: | September 30, 2021 |
DEVICE IDENTIFICATION 2.
| Trade (Proprietary) Name: | Leica Biosystems BOND MMR Antibody Panel |
|---|---|
| Common (Usual) Name: | BOND MMR Antibody Panel |
| Classification Name: | Lynch Syndrome Test System |
| Product code: | PZJ |
| Regulation Number: | 21 CFR Part 864.1866 |
| Regulatory Class: | Class II |
| Panel: | 88 - Pathology |
3. Predicate Device
VENTANA MMR IHC Panel
Page 1 of 36
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4. Device Description
4.1 BOND MMR Antibody Panel
The BOND MMR Antibody Panel [subject device] consists of the following BOND Ready-to-Use (RTU) Primary Antibody (PA) products:
- MLH1 (Mismatch Repair Protein) (ES05) (PA0988-U) .
- MSH2 (Mismatch Repair Protein) (79H11) (PA0989-U) .
- . MSH6 (Mismatch Repair Protein) (EP49) (PA0990-U)
- . PMS2 (Mismatch Repair Protein) (EP51) (PA0991-U)
The BOND MMR Antibody Panel is intended for use on the BOND-III or BOND-MAX fully automated systems with BOND Polymer Refine Detection (DS9800). The BOND MMR Antibody Panel is indicated for the detection of mismatch repair protein deficiency as an aid in the identification of potential Hereditary Non-Polyposis Colorectal Cancer (HPNCC)/Lynch Syndrome in patients diagnosed with CRC.
MLH1 (Mismatch Repair Protein) (ES05) is a mouse anti-human monoclonal antibody produced as a tissue culture supernatant, and supplied in Tris buffered saline with carrier protein, containing 0.35 % ProClin™ 950 as a preservative and in a total volume of 7 mL. The antibody is optimally diluted for use on the automated BOND-MAX or BOND-III instrument staining platforms in combination with BOND Polymer Refine Detection (DS9800).
MSH2 (Mismatch Repair Protein) (79H11) is a mouse anti-human monoclonal antibody produced as a tissue culture supernatant, and supplied in Tris buffered saline with carrier protein, containing 0.35 % ProClin™ 950 as a preservative and in a total volume of 7ml. The antibody is optimally diluted for use on the automated BOND-MAX or BOND-III instrument staining platforms in combination with BOND Polymer Refine Detection (DS9800).
MSH6 (Mismatch Repair Protein) (EP49) is a rabbit anti-human monoclonal antibody produced as an affinity-purified tissue culture supernatant, and supplied in Tris buffered saline with carrier protein, containing 0.35 % ProClin™ 950 as a preservative and in a total volume of 7ml. The antibody is optimally diluted for use on the automated BOND-MAX or BOND-III instrument staining platforms in combination with BOND Polymer Refine Detection (DS9800).
PMS2 (Mismatch Repair Protein) (EP51) is a rabbit anti-human monoclonal antibody produced as an affinity purified tissue culture supernatant, and supplied in Tris buffered saline with carrier protein, containing 0.35 % ProClin™ 950 as a preservative and in a total volume of 7ml. The antibody is optimally diluted for use on the automated BOND-MAX or BOND-III instrument staining platforms in combination with BOND Polymer Refine Detection (DS9800).
Instrument and Software: The BOND-MAX and BOND-III instruments are fully automated slide stainers that perform automated deparaffinization (dewaxing), antigen retrieval, immunohistochemistry (IHC) staining/in situ hybridization (ISH) staining, and
Page 2 of 36
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counterstaining. The major components of the BOND staining platforms are the processing module, computer (BOND controller), handheld ID scanner, and slide label printer. The BOND staining platforms are composed of a number of discrete software components including the BOND application software, BOND instrument/processing module software, BOND service software, and Laboratory interface system - integration package (LIS-IP).
4.2 Test Principle
Immunohistochemical techniques can be used to demonstrate the presence of antigens in tissue and cells. MLH1 (Mismatch Repair Protein) (ES05), MSH2 (Mismatch Repair Protein) (79H11), MSH6 (Mismatch Repair Protein) (EP49) and PMS2 (Mismatch Repair Protein) (EP51) primary antibodies are Ready-to-Use products that have been specifically optimized for use on the automated BOND-MAX or BOND-III systems in combination with BOND Polymer Refine Detection.
The BOND Polymer Refine Detection Process is as follows:
- The specimen is incubated with hydrogen peroxide to quench endogenous peroxidase ● activity.
- The BOND Ready- to-Use Primary Antibody is applied. ●
- A post primary antibody solution enhances penetration of the subsequent polymer reagent.
- A poly-HRP anti-mouse/rabbit IgG reagent localizes the primary antibody.
- The substrate chromogen, 3,3' diaminobenzidine (DAB), visualizes the complex via a ● brown precipitate.
- Hematoxylin (blue) counterstaining allows the visualization of cell nuclei.
4.3 Summary and Explination
Colorectal cancer (CRC) is the third most common cancer with 1.8 million new cases diagnosed globally in 2018. While histopathologic features provide primary indications of pathogenesis, a more detailed understanding of the genetic drivers of this disease have emerged in recent years. A significant factor in approximately 15% of colorectal cancer cases is the presence of defects in the mismatch repair (MMR) system that result in microsatellite instability (MSI).235 MSI has both prognostic and predictive significance and in about 12% of colorectal cancers it arises from epigenetic silencing or somatic mutations of MMR genes. The remaining 3% of cases are often referred to as hereditary non-polyposis colorectal cancer (HNPCC) and are associated with Lynch Syndrome (LS), one of the most common cancer susceptibility syndromes. 3
Lynch Syndrome is caused by germline mutations in at least one of the four DNA MMR genes - MLH1, MSH2, MSH6 and PMS2.23 The MMR proteins encoded by these genes play a vital role in maintaining genetic integrity during the cell cycle. Disruption of their function leads to a failure in the repair of errors made during DNA replication, an accumulation of which can lead to MSI and promote carcinogenesis. Lynch syndrome is associated with a 50-70% lifetime risk of colorectal cancer and an increased risk of other malignancies. Identification of such high risk individuals is vital so that surveillance and screening programs for family members can be initiated. 334
Page 3 of 36
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4.4 System Components 4.4.1 System Overview
The Test Components/Accessories of the BOND MMR Antibody Panel System are summarized below:
| Components of the BOND MMR Antibody Panel System | |||
|---|---|---|---|
| BOND Ready-to-Use (RTU) Primary Antibodies | BOND Detection System | BOND Ancillary Reagents/BOND Consumables | BOND Platforms |
| BOND MMR Antibody Panel MLH1 (Mismatch Repair Protein) (ES05) (PA0988-U) MSH2 (Mismatch Repair Protein) (79H11) (PA0989-U) MSH6 (Mismatch Repair Protein) (EP49) (PA0990-U) PMS2 (Mismatch Repair Protein) (EP51) (PA0991-U) Negative (Mouse) BOND Ready-to-Use Negative Control (PA0996) Negative (Rabbit) BOND Ready-to-Use Negative Control (PA0777) | BOND Polymer Refine Detection (DS9800) | BOND Wash Solution 10X (AR9590) Concentrate BOND Dewax Solution (AR9222) BOND Epitope Retrieval Solution 1 (AR9961) BOND Epitope Retrieval Solution 2 (AR9640) BOND Universal Covertile (S21.4611 & S21.2001) | BOND-MAX Instrument BOND-III Instrument |
Materials Provided with the BOND MMR Antibody Panel 4.4.2
The BOND MMR Antibody Panel consists of the following BOND Ready-to-Use (RTU) Primary Antibody (PA) products:
- MLH1 (Mismatch Repair Protein) (ES05) (PA0988-U) ●
- MSH2 (Mismatch Repair Protein) (79H11) (PA0989-U)
- MSH6 (Mismatch Repair Protein) (EP49) (PA0990-U) ●
- PMS2 (Mismatch Repair Protein) (EP51) (PA0991-U)
4.4.3 Materials Not provided with the BOND MMR Antibody Panel
Reagents required but not provided with the BOND MMR Antibody Panel are listed below:
- . BOND Ready-to-Use Negative Control Negative (Mouse) (Catalog No. PA0996)
- . BOND Ready-to-Use Negative Control Negative (Rabbit) (Catalog No. Page 4 of 36
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PA0777)
- BOND Polymer Refine Detection (Catalog No. DS9800) ●
- BOND Dewax Solution (Catalog No. AR9222)
- BOND Epitope Retrieval Solution 1 (Catalog No. AR9961)
- BOND Epitope Retrieval Solution 2 (Catalog No. AR9640) ●
- . BOND Wash Solution 10X Concentrate (Catalog No. AR9590)
4.5 Controls
Internal Positive Tissue Control 4.5.1
Normal epithelial cells in the vicinity of the tumor or infiltrating lymphocytic cells, fibroblasts, nerves and muscle integral to the patient specimen can serve as an internal positive tissue control for MLH1 (Mismatch Repair Protein) (ES05) as they should exhibit expression of MLH1 even if the tumor in the patient specimen is deficient for the protein. The presence of staining elicited by MLH1 (Mismatch Repair Protein) (ES05) in an internal positive tissue control indicates the following:
-
- The tissue of the patient specimen has been subjected to suitable processing and fixation to allow the epitope of the target protein to be detected via IHC.
-
- The staining procedure has been performed correctly on the slide mounted with the patient specimen.
-
- The primary antibody is performing as intended and staining the corresponding protein.
4.5.2 Negative Reagent Control
For each patient specimen, a negative reagent control must be used to stain an additional slide-mounted tissue section to that stained with the primary antibody. This will determine whether the primary antibody is reacting with the patient tissue in a non-specific manner. BOND Ready-to-Use Negative Control Negative (Mouse) is recommended as the negative reagent control for use in conjunction with MLH1 (Mismatch Repair Protein) (ES05) and MSH2 (Mismatch Repair Protein) (79H11). BOND Ready-to-Use Negative Control Negative (Rabbit) is recommended as the negative reagent control for use in conjunction with MSH6 (Mismatch Repair Protein) (EP49) and PMS2 (Mismatch Repair Protein) (EP51).
4.6 Interpretation of Results
Hematoxylin and Eosin stained slides are used to assess the overall quality of the sample for each case. An assessment should be made of the quality and quantity of the tumor content of the CRC sample. Cases should be voided if there is insufficient tumor (less than 50 viable tumor cells) available to score or if the sample is poorly fixed or otherwise of a poor enough quality that renders interpretation of the case impossible. The MMR protein status for each IHC marker shall be assigned following the decision summary illustrated in the flowchart below.
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Image /page/8/Figure/1 description: This image is a flowchart outlining the process for evaluating MMR marker status. The flowchart begins with the evaluation of H&E slides, checking for sufficient tumor presence (≥50 viable tumor cells) and tissue quality. Subsequent evaluations include negative isotype control slides and MMR stained slides, assessing the acceptability of controls and nuclear staining. The flowchart concludes with assigning a status of MMR marker 'INTACT' or 'LOSS' based on the staining results.
Decision Summary Flowchart - MMR Protein Status for each IHC Marker
- Any staining seen in the Negative Isotype Controls should be taken into account when interpreting the MMR antibody stained test sections. If any staining is judged to be of sufficient intensity to adversely affect the interpretation of the test sections then this should be classed as unacceptable and the case voided.
** Weaker than internal positive control cells
To obtain the BOND MMR Antibody Panel results, each individual marker (MLH1, MSH2, MSH6 and PMS2) will be scored as protein loss or protein intact according to the device's scoring criteria. The loss of one or more of these proteins within one specimen will be considered an MMR loss. To obtain an intact panel result, all four proteins must be scored as intact.
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5. Intended Use/Indications for Use
The BOND MMR Antibody Panel is intended to be used for the qualitative identification by light microscopy of human mismatch repair (MMR) proteins MLH1, MSH2, MSH6 and PMS2 in formalin-fixed, paraffin-embedded (FFPE) colorectal cancer (CRC) tissue sections by immunohistochemical staining. The BOND MMR Antibody Panel includes BOND Ready-to-Use Primary Antibody MLH1 (Mismatch Repair Protein) (ES05), BOND Ready-to-Use Primary Antibody MSH2 (Mismatch Repair Protein) (79H11), BOND Ready-to-Use Primary Antibody MSH6 (Mismatch Repair Protein) (EP49) and BOND Ready-to-Use Primary Antibody PMS2 (Mismatch Repair Protein) (EP51). The BOND MMR Antibody Panel is intended for use on the BOND-III or BOND-MAX fully automated systems with BOND Polymer Refine Detection.
The BOND MMR Antibody Panel is indicated for the detection of MMR protein deficiency as an aid in the identification of potential hereditary nonpolyposis colorectal cancer (HNPCC)/Lynch Syndrome in patients diagnosed with CRC. Patients with "MMR Loss" results should receive additional diagnostic testing consistent with clinical practice guidelines for diagnosis of Lynch syndrome. The BOND MMR Antibody Panel is not intended for use in indications other than CRC. This test should not be used for diagnosis of CRC.
The clinical interpretation of any staining or its absence when using the BOND MMR Antibody Panel should be complemented by morphological studies and proper controls and should be evaluated within the context of the patient's clinical history and other diagnostic tests by a qualified pathologist.
The clinical performance of this device to guide treatment of MMR deficient patients has not been established.
Limitations
- MLH1 (Mismatch Repair Protein) (ES05), MSH2 (Mismatch Repair Protein) (79H11), MSH6 (Mismatch Repair Protein) (EP49), and PMS2 (Mismatch Repair Protein) (EP51) have been solely cleared for use on the BOND-III and BOND-Max instrument with the BOND Polymer Refine Detection Kit and is not cleared with any other automated staining instruments or detection methods.
- MLH1 (Mismatch Repair Protein) (ES05), MSH2 (Mismatch Repair Protein) (79H11), MSH6 (Mismatch Repair Protein) (EP49), and PMS2 (Mismatch Repair Protein) (EP51) have been optimized at Leica Biosystems for use with BOND Polymer Refine Detection and BOND ancillary reagents.
- . The effect of retrieval, incubation times or temperatures other than those specified is unknown and may give erroneous results. Users who deviate from the listed protocol must accept responsibility for interpretation of patient results.
- The protocol times may vary, due to variation in tissue fixation and the effectiveness of antigen enhancement, and must be determined empirically.
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Negative reagent controls should be used when optimizing retrieval conditions and protocol times.
- For staining interpretation, there must be ≥50 viable tumor cells present for . evaluation.
- . The stratification of MMR loss cases via BRAF is not recommended as the presence of BRAFV600E does not definitively exclude Lynch Syndrome as a possible aetiologyetiology. Use of this test with a BRAF test may lead to increased false negative results.
- . Test Results obtained using the product must be interpreted by healthcare professionals in conjunction with other clinical findings, family history and other laboratory data.
- . The clinical performance of this device to guide treatment of MMR deficient patients has not been established.
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| Comparison Table of the BOND MMR Antibody Panel [subject device] and theVentana MMR IHC Panel (DEN170030) [predicate device] | ||
|---|---|---|
| Characteristics | Leica BiosystemsBOND MMR Antibody Panel[Subject Device] | VENTANA MMR IHC Panel (DEN170030)[Predicate Device] |
| Similarities | ||
| IntendedUse/Indications forUse | For In Vitro Diagnostic UseThe BOND MMR Antibody Panel is intended to be used for the qualitativeidentification by light microscopy of human mismatch repair (MMR)proteins MLH1, MSH2, MSH6 and PMS2 in formalin-fixed, paraffin-embedded (FFPE) colorectal cancer (CRC) tissue sections byimmunohistochemical staining. The BOND MMR Antibody Panel includesBOND Ready-to-Use Primary Antibody MLH1 (Mismatch Repair Protein)(ES05), BOND Ready-to-Use Primary Antibody MSH2 (Mismatch RepairProtein) (79H11), BOND Ready-to-Use Primary Antibody MSH6(Mismatch Repair Protein) (EP49) and BOND Ready-to-Use PrimaryAntibody PMS2 (Mismatch Repair Protein) (EP51). The BOND MMRAntibody Panel is intended for use on the BOND-III or BOND-MAX fullyautomated systems with BOND Polymer Refine Detection.The BOND MMR Antibody Panel is indicated for the detection of MMRprotein deficiency as an aid in the identification of potential hereditarynonpolyposis colorectal cancer (HNPCC)/Lynch Syndrome in patientsdiagnosed with CRC. Patients with "MMR Loss" results should receiveadditional diagnostic testing consistent with clinical practice guidelines fordiagnosis of Lynch syndrome. The BOND MMR Antibody Panel is notintended for use in indications other than CRC. This test should not be usedfor diagnosis of CRC.The clinical interpretation of any staining or its absence when using theBOND MMR Antibody Panel should be complemented by morphologicalstudies and proper controls and should be evaluated within the context of thepatient's clinical history and other diagnostic tests by a qualified pathologist.The clinical performance of this device to guide treatment of MMR deficientpatients has not been established. | For In Vitro Diagnostic UseThe VENTANA MMR IHC Panel is a qualitative immunohistochemistry (IHC) test intendedfor use in the light microscopic assessment of mismatch repair (MMR) proteins (MLH1,PMS2, MSH2, and MSH6) and BRAF V600E proteins in formalin-fixed, paraffin-embeddedcolorectal cancer (CRC) tissue sections. The opt iView DAB IHC Detection Kit is used withMLH1, MSH2, MSH6 and BRAF V600E, and the OptiView DAB IHC Detection Kit withOptiView Amplification Kit is used for PMS2 detection. The VENTANA MMR IHC Panelis for use on the VENTANA BenchMark ULTRA instrument. The VENTANA MMR IHCPanel includes VENTANA anti-MLH1 (M1) Mouse Monoclonal Primary Antibody,VENTANA anti-PMS2 (A16-4) Mouse Monoclonal Primary Antibody, VENTANA anti-MSH2 (G219-1129) Mouse Monoclonal Primary Antibody, VENTANA anti-MSH6 (SP93)Rabbit Monoclonal Primary Antibody, and VENTANA anti-BRAF V600E (VE1) MouseMonoclonal Primary Antibody.The VENTANA MMR IHC Panel is indicated in patients diagnosed with colorectal cancer(CRC) to detect mismatch repair (MMR) proteins deficiency as an aid in the identification ofprobable Lynch syndrome and to detect BRAFV600E protein as an aid to differentiatebetween sporadic CRC and probable Lynch syndrome.Results from the Ventana MMR IHC Panel should be interpreted by a qualified pathologist inconjunction with histological examination, relevant clinical information, and proper controls.The clinical performance of this device to guide treatment of MMR deficient patients has notbeen established. |
| Technology | Immunohistochemistry based protein expression | Same |
| Tissue Type | Formalin-Fixed Paraffin-Embedded Colorectal CancerTissue Sections | Same |
| Assay Type | Qualitative | Same |
| Staining Pattern | Nuclear | Same |
| Read/ReviewEquipment | Light Microscopy | Same |
| Target Population | Patients diagnosed with CRC | Same |
| Controls | Internal positive tissue controls and negative reagent controls | External and internal positive tissue controls and negative reagent controls |
| Result Interpretation | Pathologist assessment | Same |
| Differences | ||
| Antibody Type | • Anti-MLH1 (ES05): Mouse Monoclonal• Anti-MSH2 (79H11): Mouse Monoclonal• Anti-MSH6 (EP49): Rabbit Monoclonal• Anti-PMS2 (EP51): Rabbit Monoclonal | • Anti-MLH1 (M1): Mouse Monoclonal• Anti-MSH2 (G219-1129): Mouse Monoclonal• Anti-MSH6 (SP93): Rabbit Monoclonal• Anti-PMS2 (A16-4): Mouse Monoclonal• Anti-BRAF V600E (VE1): Mouse Monoclonal |
| Mismatch Repair(MMR) Protein IHCPanel | • Anti-MLH1• Anti-MSH2• Anti-MSH6• Anti-PMS2 | • Anti-MLH1• Anti-MSH2• Anti-MSH6• Anti-PMS2• Anti-BRAF V600E |
| Assay Target | 4 -Mismatch repair (MMR) proteins MLH1, MSH2, MSH6 and PMS2 | 4 -Mismatch repair (MMR) proteins MLH1, MSH2, MSH6 and PMS2, and BRAF6 V600E |
| Detection Kit | BOND Polymer Refine Detection (DS9800): Biotin-free, polymeric HRP-linkerantibody conjugate, for MLH1, MSH2, MSH6 and PMS2. | OptiView DAB IHC Detection Kit: Biotin-free, Multimeric HRP-linker antibody conjugatefor MLH1, MSH2, MSH6 and BRAF V600E.OptiView DAB IHC Detection Kit with OptiView Amplification Kit: Biotin-free, MultimericHRP-linker antibody conjugate, with tyramide- based amplification for PMS2. |
| Staining Instruments | LBS BOND -MAX and BOND-III Instruments | VENTANA BenchMark ULTRA Instrument |
6. Comparison of technological characteristics with the predicate device
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Comparison Between the Device and Predicate 6.1
The BOND MMR Antibody Panel [subject device] and the VENTANA MMR IHC Panel (DEN170030) [predicate device] share the same technological and Immunohistochemistry principles for a Lynch Syndrome Test System.
Based on the data generated from the results of the Non-Clinical Performance Testing and the Clinical Performance Testing conducted on the subject device, it may be concluded that the BOND MMR Antibody Panel [subject device] is as safe and effective, and performs as well as, the legally marketed predicate device, the VENTANA MMR IHC Panel (DEN170030) [predicate device]. The similar Indications for Use / Intended Use, and substantially equivalent usability, functionality, and performance characteristics for the proposed the subject device have been assessed to be substantially equivalent (SE) to the predicate device, and any differences do not raise new or different issues of safety and effectiveness when compared to the predicate device.
Special Controls 6.2
The device meets all General Controls and Special Controls listed for regulation 21CFR 864.1866. Documentation and data supporting the Specific to this product classification were documented in the submission and summarized in this document and the product label.
7. Performance Characteristics
7.1 Analytical performance
7.1.1 Precision
Three studies were performed to evaluate the precision of the BOND MMR Antibody Panel.
i. Precision across Lots and Days on the BOND-III and BOND-MAX Instruments This study was conducted at 1 site using 3 lots of BOND Ready To Use MMR Primary Antibody for each of the 4 MMR proteins. Slides from 40 FFPE CRC tissue cases, 10 cases per MMR protein, with 5 cases being protein deficient and 5 cases expressing intact protein were tested. Each case was stained 18 times [3 Slide Staining Assembly (SSAs) x 6 days] on 1 BOND-III and 1 BOND-MAX instrument. Testing was performed over 6 nonconsecutive days following a randomized testing order. Therefore, a total of 1440 slides (4 antibodies x 10 samples x 3 SSAs x 2 instruments x 6 days) were evaluated. A single pathologist read and scored all stained slides.
Positive percent agreement (PPA), negative percent agreement (NPA) and overall percent agreement (OPA) were calculated, comparing the antibody status of each processed slide determined by the pathologist to the majority score. Point estimates along with 2-sided 95% confidence intervals were calculated separately by instrument and by antibody. All slides from one case for MSH2 staining were excluded from BOND-III data analysis (n = 18) and from BOND-MAX data analysis (n = 18) because the case had insufficient tumor.
Intra-run Repeatability:
Intra-run repeatability was evaluated using 40 FFPE CRC tissue cases, 10 cases per MMR protein, with 5 cases being protein deficient (protein loss) and 5 cases
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expressing intact protein (intact). Six (6) slides were stained using each panel antibody. Data were obtained using 1 lot of each panel antibody from 60 total observations (10 cases x 3 replicates x 2 days x 1 instrument) for each panel antibody on BOND-III and from 60 total observations (10 cases x 3 replicates x 2 days x 1 instrument) for each panel antibody on BOND-MAX. Intra-run repeatability OPA was 100% for each panel antibody on both instruments except MSH2 on BOND-III (OPA 98.1%, PPA 100%, NPA 95.8%) and PMS2 on BOND-MAX (OPA 98.3%, PPA 100%, NPA 96.7%). Results for individual panel antibodies are shown in Table 1 below.
| Antibody | Agreement on BOND-III | Agreement on BOND-MAX | ||||||
|---|---|---|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | Type | n/N* | % | 95% CI | |
| Anti-MLH1(ES05) | PPA | 30/30 | 100 | [88.6% - 100%] | PPA | 30/30 | 100 | [88.6% - 100%] |
| NPA | 30/30 | 100 | [88.6% - 100%] | NPA | 30/30 | 100 | [88.6% - 100%] | |
| OPA | 60/60 | 100 | [94.0% - 100%] | OPA | 60/60 | 100 | [94.0% - 100%] | |
| Anti-MSH2(79H11) | PPA | 30/30 | 100 | [88.6% - 100%] | PPA | 30/30 | 100 | [88.6% - 100%] |
| NPA | 23/24 | 95.8 | [79.8% - 99.3%] | NPA | 24/24 | 100 | [86.2% - 100%] | |
| OPA | 53/54 | 98.1 | [90.2% - 99.7%] | OPA | 54/54 | 100 | [93.4% - 100%] | |
| Anti-MSH6(EP49) | PPA | 30/30 | 100 | [88.6% - 100%] | PPA | 30/30 | 100 | [88.6% - 100%] |
| NPA | 30/30 | 100 | [88.6% - 100%] | NPA | 30/30 | 100 | [88.6% - 100%] | |
| OPA | 60/60 | 100 | [94.0% - 100%] | OPA | 60/60 | 100 | [94.0% - 100%] | |
| Anti-PMS2(EP51) | PPA | 30/30 | 100 | [88.6% - 100%] | PPA | 30/30 | 100 | [88.6% - 100%] |
| NPA | 30/30 | 100 | [88.6% - 100%] | NPA | 29/30 | 96.7 | [83.3% - 99.4%] | |
| OPA | 60/60 | 100 | [94.0% - 100%] | OPA | 59/60 | 98.3 | [91.1% - 99.7%] |
Table 1 Summary of Intra-run Precision
*Number of agreement/Number of pairs
Between-dav Precision:
Between-day repeatability was evaluated using the same CRC cases used for intrarun testing. Three (3) slides were stained using each of the 4 panel antibodies across 6 non-consecutive days on BOND-III and BOND-MAX. For Day 1 and 2, the first six slides from each case from Intra-run precision study were used. Data were obtained from 180 total observations (10 cases x 3 replicates x 6 days x 1 instrument) for each panel antibody on BOND-III and from 180 total observations (10 cases x 3 replicates x 6 days x 1 instrument) for each panel antibody on BOND-MAX [Note: MSH2 evaluation was conducted with 4 intact and 5 loss status cases (9 total cases) for a total of 162 observations per instrument since 1 case was excluded due to insufficient tumor]. Between-day repeatability OPA was 100% for each panel antibody on both instruments except MSH2 on BOND-III (OPA 98.8%, PPA 98.9%, NPA 98.6%), MSH6 on BOND-III (OPA 99.4%, PPA 98.9%, NPA 100%) and BOND-MAX (OPA 99.4%, PPA 100%, NPA 98.9%), PMS2 on BOND-III (OPA 98.9%, PPA 98.9%, NPA 98.9%) and BOND-MAX (OPA 99.4%, PPA 100%, NPA 98.9%). The study met pre-specified acceptance criteria of ≥85% lower bound confidence interval. Results for individual panel antibodies are shown in Table 2 below.
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| Antibody | Agreement on BOND-III | Agreement on BOND-MAX | ||||||
|---|---|---|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | Type | n/N* | % | 95% CI | |
| Anti- | PPA | 90/90 | 100 | [95.9% - 100%] | PPA | 90/90 | 100 | [95.9% - 100%] |
| MLH1 | NPA | 90/90 | 100 | [95.9% - 100%] | NPA | 90/90 | 100 | [95.9% - 100%] |
| (ES05) | OPA | 180/180 | 100 | [97.9% - 100%] | OPA | 180/180 | 100 | [97.9% - 100%] |
| Anti- | PPA | 89/90 | 98.9 | [94.0% - 99.8%] | PPA | 90/90 | 100 | [95.9% - 100%] |
| MSH2 | NPA | 71/72 | 98.6 | [92.5% - 99.8%] | NPA | 72/72 | 100 | [94.9% - 100%] |
| (79H11) | OPA | 160/162 | 98.8 | [95.6% - 99.7%] | OPA | 162/162 | 100 | [97.7% - 100%] |
| Anti- | PPA | 89/90 | 98.9 | [94.0% - 99.8%] | PPA | 90/90 | 100 | [95.9% - 100%] |
| MSH6 | NPA | 90/90 | 100 | [95.9% - 100%] | NPA | 89/90 | 98.9 | [94.0% - 99.8%] |
| (EP49) | OPA | 179/180 | 99.4 | [96.9% - 99.9%] | OPA | 179/180 | 99.4 | [96.9% - 99.9%] |
| Anti-PMS2 | PPA | 89/90 | 98.9 | [94.0% - 99.8%] | PPA | 90/90 | 100 | [95.9% - 100%] |
| (EP51) | NPA | 89/90 | 98.9 | [94.0% - 99.8%] | NPA | 89/90 | 98.9 | [94.0% - 99.8%] |
| OPA | 178/180 | 98.9 | [96.0% - 99.7%] | OPA | 179/180 | 99.4 | [96.9% - 99.9%] |
Table 2 Summary of Between-dav Precision
Between-lot Precision:
The study evaluated lot to lot repeatability with 3 final lots of each of the 4 panel antibodies using the same CRC cases as intra-run testing. Three (3) slides per case were stained using each panel antibody across 6 non-consecutive days (2 days per lot) on BOND-III and BOND-MAX. Data were obtained from 180 total observations (10 cases x 3 replicates x 2 days x 3 lots) for each panel antibody on BOND-III and from 180 total observations (10 cases x 3 replicates x 2 days x 3 lots) for each panel antibody on BOND-MAX. [Note: MSH2 evaluation was conducted with 4 intact and 5 loss status cases (9 cases total) for a total of 162 observations per instrument since 1 case was excluded due to insufficient tumor]. Between-lot repeatability OPA was 100% for each panel antibody on both instruments with the exception of MSH2 on BOND-III (OPA 98.8%, PPA 98.9%, NPA 98.6%), MSH6 on BOND-III (OPA 99.4%, PPA 98.9%) and BOND-MAX (OPA 99.4%, NPA 98.9%), PMS2 on BOND-III (OPA 98.9%, PPA 98.9%, NPA 98.9%) and BOND-MAX (OPA 99.4%, NPA 98.9%). The study met pre-specified acceptance criteria of >85% lower bound confidence interval. Results for individual panel antibodies are shown in Table 3 below.
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| Antibody | Agreement on BOND-III | Agreement on BOND-MAX | ||||||
|---|---|---|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | Type | n/N* | % | 95% CI | |
| Anti-MLH1(ES05) | PPA | 90/90 | 100 | [95.9% - 100%] | PPA | 90/90 | 100 | [95.9% - 100%] |
| NPA | 90/90 | 100 | [95.9% - 100%] | NPA | 90/90 | 100 | [95.9% - 100%] | |
| OPA | 180/180 | 100 | [97.9% - 100%] | OPA | 180/180 | 100 | [97.9% - 100%] | |
| Anti-MSH2(79H11) | PPA | 89/90 | 98.9 | [94.0% - 99.8%] | PPA | 90/90 | 100 | [95.9% - 100%] |
| NPA | 71/72 | 98.6 | [92.5% - 99.8%] | NPA | 72/72 | 100 | [94.9% - 100%] | |
| OPA | 160/162 | 98.8 | [95.6% - 99.7%] | OPA | 162/162 | 100 | [97.7% - 100%] | |
| Anti-MSH6(EP49) | PPA | 89/90 | 98.9 | [94.0% - 99.8%] | PPA | 90/90 | 100 | [95.9% - 100%] |
| NPA | 90/90 | 100 | [95.9% - 100%] | NPA | 89/90 | 98.9 | [94.0% - 99.8%] | |
| OPA | 179/180 | 99.4 | [96.9% - 99.9%] | OPA | 179/180 | 99.4 | [96.9% - 99.9%] | |
| Anti-PMS2(EP51) | PPA | 89/90 | 98.9 | [94.0% - 99.8%] | PPA | 90/90 | 100 | [95.9% - 100%] |
| NPA | 89/90 | 98.9 | [94.0% - 99.8%] | NPA | 89/90 | 98.9 | [94.0% - 99.8%] | |
| OPA | 178/180 | 98.9 | [96.0% - 99.7%] | OPA | 179/180 | 99.4 | [96.9% - 99.9%] |
Table 3 Summarv of Between-lot Precision
The results support that the BOND MMR Antibody Panel on BOND-III and on BOND-MAX have acceptable levels of precision (repeatability) across lots and davs.
ii. Reproducibility across Laboratories and Pathologists on the BOND-III and BOND-MAX Instruments
This study was conducted at 3 sites using 1 lot of the BOND MMR antibody for each of the 4 MMR proteins. Slides from 30 FFPE CRC tissue cases were tested, including cases being protein deficient and cases expressing intact proteins. Each case was stained on 1 BOND-III and 1 BOND MAX instrument per site, for a total of 6 times (3 sites x 2 instruments). Testing was performed on 6 non-consecutive days over a minimum 20-day testing period, following randomized testing orders. A single pathologist per site read and scored all stained slides from that site. In addition, 3 pathologists read and scored a set of 30 cases stained at 1 site in 3 scoring sessions separated by a washout period of at least 14 days.
| Marker/Antibody | Positive/Intact | Deficient/Loss | Total |
|---|---|---|---|
| MLH1 | 25 | 5 | |
| MSH2 | 27 | 3 | |
| MSH6 | 26 | 4 | 30 |
| PMS2 | 24 | 6 |
Table 4 MMR antibody Case Status
PPA, NPA and OPA were calculated for point estimates along with 2-sided 95% confidence intervals to evaluate intra-pathologist, inter-pathologist, inter-laboratory and inter-instrument precision.
Results of the study are summarized in Table 5 to Table 9. The results support that the BOND MMR Antibody Panel on BOND-III and on BOND-MAX have
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acceptable levels of precision (reproducibility).
Intra- and Inter-Pathologist Reproducibilitv:
Intra-pathologist and inter-pathologist reproducibility were assessed by evaluating concordance of marker status across 3 pathologists and within individual pathologists using 30 cases of CRC stained at 1 site on BOND-III and BOND-MAX. These 30 CRC specimens consisted of varying number of cases with loss or intact MMR protein status as shown in Table 4. Each reader scored all 30 cases in three rounds that were separated by a two week wash out period. Data was obtained from 270 total observations (30 cases x 3 replicate x 3 pathologists) for each of the 4 panel antibodies for BOND-III, and from 270 total observations (30 cases x 3 replicate x 3 pathologists) for each panel antibody for BOND-MAX. Intrapathologist reproducibility OPA ranged from 99.3% to 100%, PPA ranged from 99.2% to 100%. The results are shown below in Table 5. Inter-pathologist reproducibility OPA ranged from 99.3% to 100%, PPA ranged from 99.2% to 100%. The results are shown below in Table 6. The studies met the pre-specified acceptance criteria.
| Antibody | Agreement on BOND-III | Agreement on BOND-MAX | ||||||
|---|---|---|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | Type | n/N* | % | 95% CI | |
| Overallcall | PPA | 180/180 | 100 | [97.9% - 100%] | PPA | 180/180 | 100 | [97.9% - 100%] |
| NPA | 90/90 | 100 | [95.9% - 100%] | NPA | 90/90 | 100 | [95.9% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 270/270 | 100 | [98.6% - 100%] | |
| Anti-MLH1(ES05) | PPA | 225/225 | 100 | [98.3% - 100%] | PPA | 225/225 | 100 | [98.3% - 100%] |
| NPA | 45/45 | 100 | [92.1% - 100%] | NPA | 45/45 | 100 | [92.1% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 270/270 | 100 | [98.6% - 100%] | |
| Anti-MSH2(79H11) | PPA | 252/252 | 100 | [98.5% - 100%] | PPA | 250/252 | 99.2 | [97.2% - 99.8%] |
| NPA | 18/18 | 100 | [82.4% - 100%] | NPA | 18/18 | 100 | [82.4% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 268/270 | 99.3 | [97.3% - 99.8%] | |
| Anti-MSH6(EP49) | PPA | 234/234 | 100 | [98.4% - 100%] | PPA | 234/234 | 100 | [98.4% - 100%] |
| NPA | 36/36 | 100 | [90.4% - 100%] | NPA | 36/36 | 100 | [90.4% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 270/270 | 100 | [98.6% - 100%] | |
| Anti-PMS2(EP51) | PPA | 216/216 | 100 | [98.3% - 100%] | PPA | 216/216 | 100 | [98.3% - 100%] |
| NPA | 54/54 | 100 | [93.4% - 100%] | NPA | 54/54 | 100 | [93.4% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 270/270 | 100 | [98.6% - 100%] |
Table 5 Summary of Intra-Pathologist Reproducibility
*Number of agreement/Number of pairs
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| Antibody | Agreement on BOND-III | Agreement on BOND-MAX | ||||||
|---|---|---|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | Type | n/N* | % | 95% CI | |
| Overallcall | PPA | 180/180 | 100 | [97.9% - 100%] | PPA | 180/180 | 100 | [97.9% - 100%] |
| NPA | 90/90 | 100 | [95.9% - 100%] | NPA | 90/90 | 100 | [95.9% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 270/270 | 100 | [98.6% - 100%] | |
| Anti-MLH1(ES05) | PPA | 225/225 | 100 | [98.3% - 100%] | PPA | 225/225 | 100 | [98.3% - 100%] |
| NPA | 45/45 | 100 | [92.1% - 100%] | NPA | 45/45 | 100 | [92.1% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 270/270 | 100 | [98.6% - 100%] | |
| Anti-MSH2(79H11) | PPA | 252/252 | 100 | [98.5% - 100%] | PPA | 250/252 | 99.2 | [97.2% - 99.8%] |
| NPA | 18/18 | 100 | [82.4% - 100%] | NPA | 18/18 | 100 | [82.4% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 268/270 | 99.3 | [97.3% - 99.8%] | |
| Anti-MSH6(EP49) | PPA | 234/234 | 100 | [98.4% - 100%] | PPA | 234/234 | 100 | [98.4% - 100%] |
| NPA | 36/36 | 100 | [90.4% - 100%] | NPA | 36/36 | 100 | [90.4% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 270/270 | 100 | [98.6% - 100%] | |
| Anti-PMS2(EP51) | PPA | 216/216 | 100 | [98.3% - 100%] | PPA | 216/216 | 100 | [98.3% - 100%] |
| NPA | 54/54 | 100 | [93.4% - 100%] | NPA | 54/54 | 100 | [93.4% - 100%] | |
| OPA | 270/270 | 100 | [98.6% - 100%] | OPA | 270/270 | 100 | [98.6% - 100%] |
Table 6 Summary of Inter-Pathologist Reproducibility
Inter-Instrument Reproducibilitv:
Instrument to instrument reproducibility was evaluated by one pathologist using the same cases as Inter-pathologist and Intra-pathologist reproducibility. One slide was stained using each of the 4 panel antibodies, one slide was stained with Negative Control (Mouse), and one slide was stained with Negative Control (Rabbit) for each case across 3 different BOND-III and 3 different BOND-MAX instruments. Data was obtained from 90 total observations (30 cases x 1 replicate x 3 instruments) for each panel antibody for BOND-III, and from 90 total observations (30 cases x 1 replicate x 3 instruments) for each panel antibody for BOND-MAX. Interinstrument reproducibility OPA ranged from 98.9% to 100%, PPA ranged from 98.8% to 100%, NPA ranged from 93.3% to 100%. The study met pre-specified acceptance criteria. Results for the overall panel and each panel antibody on BOND-III and BOND-MAX are shown in Table 7 below.
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| Antibody | Agreement on BOND-III | Agreement on BOND-MAX | ||||||
|---|---|---|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | Type | n/N* | % | 95% CI | |
| Overallcall | PPA | 60/60 | 100 | [94.0% - 100%] | PPA | 60/60 | 100 | [94.0% - 100%] |
| NPA | 30/30 | 100 | [88.6% - 100%] | NPA | 29/30 | 96.7 | [83.3% - 99.4%] | |
| OPA | 90/90 | 100 | [95.9% - 100%] | OPA | 89/90 | 98.9 | [94.0% - 99.8%] | |
| Anti-MLH1(ES05) | PPA | 75/75 | 100 | [95.1% - 100%] | PPA | 75/75 | 100 | [95.1% - 100%] |
| NPA | 15/15 | 100 | [79.6% - 100%] | NPA | 14/15 | 93.3 | [70.2% - 98.8%] | |
| OPA | 90/90 | 100 | [95.9% - 100%] | OPA | 89/90 | 98.9 | [94.0% - 99.8%] | |
| Anti-MSH2(79H11) | PPA | 84/84 | 100 | [95.6% - 100%] | PPA | 83/84 | 98.8 | [93.6% - 99.8%] |
| NPA | 6/6 | 100 | [61.0% - 100%] | NPA | 6/6 | 100 | [61.0% - 100%] | |
| OPA | 90/90 | 100 | [95.9% - 100%] | OPA | 89/90 | 98.9 | [94.0% - 99.8%] | |
| Anti-MSH6(EP49) | PPA | 78/78 | 100 | [95.3% - 100%] | PPA | 78/78 | 100 | [95.3% - 100%] |
| NPA | 12/12 | 100 | [75.8% - 100%] | NPA | 12/12 | 100 | [75.8% - 100%] | |
| OPA | 90/90 | 100 | [95.9% - 100%] | OPA | 90/90 | 100 | [95.9% - 100%] | |
| Anti-PMS2(EP51) | PPA | 72/72 | 100 | [94.9% - 100%] | PPA | 72/72 | 100 | [94.9% - 100%] |
| NPA | 18/18 | 100 | [82.4% - 100%] | NPA | 17/18 | 94.4 | [74.2% - 99.0%] | |
| OPA | 90/90 | 100 | [95.9% - 100%] | OPA | 89/90 | 98.9 | [94.0% - 99.8%] |
Table 7 Summary of Inter-Instrument Reproducibility
Inter-laboratorv Reproducibilitv:
The reproducibility of the BOND MMR Antibody Panel was assessed at 3 sites using the same cases as Inter-pathologist and Intra-pathologist reproducibility. Multiple tissue sections were cut from each case. Three (3) sites (2 external and 1 internal) stained all cases with the designated antibody and the appropriate negative reagent control (NRC) antibody spanning a period of at least 20 days. One pathologist at each site independently evaluated each case to determine the status (intact or loss).
Data was obtained from 90 total observations (30 cases x 1 replicate x 3 sites) for each of the 4 panel antibodies for BOND-III, and from 90 total observations (30 cases x 1 replicate x 3 sites) for each panel antibody for BOND-MAX. Reproducibility OPA ranged from 98.9% to 100%, PPA ranged from 98.8% to 100%. The study met pre-specified acceptance criteria. Results for the overall panel and each panel antibody on BOND-III and BOND-MAX are shown in Table 8 below.
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| Antibody | Agreement on BOND-III | Agreement on BOND-MAX | ||||||
|---|---|---|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | Type | n/N* | % | 95% CI | |
| Overallcall | PPA | 59/59 | 100 | [93.9% - 100%] | PPA | 60/60 | 100 | [94.0% - 100%] |
| NPA | 30/30 | 100 | [88.6% - 100%] | NPA | 30/30 | 100 | [88.6% - 100%] | |
| OPA | 89/89 | 100 | [95.9% - 100%] | OPA | 90/90 | 100 | [95.9% - 100%] | |
| Anti-MLH1(ES05) | PPA | 74/74 | 100 | [95.1% - 100%] | PPA | 75/75 | 100 | [95.1% - 100%] |
| NPA | 15/15 | 100 | [79.6% - 100%] | NPA | 15/15 | 100 | [79.6% - 100%] | |
| OPA | 89/89 | 100 | [95.9% - 100%] | OPA | 90/90 | 100 | [95.9% - 100%] | |
| Anti-MSH2(79H11) | PPA | 83/83 | 100 | [95.6% - 100%] | PPA | 83/84 | 98.8 | [93.6% - 99.8%] |
| NPA | 6/6 | 100 | [61.0% - 100%] | NPA | 6/6 | 100 | [61.0% - 100%] | |
| OPA | 89/89 | 100 | [95.9% - 100%] | OPA | 89/90 | 98.9 | [94.0% - 99.8%] | |
| Anti-MSH6(EP49) | PPA | 77/77 | 100 | [95.2% - 100%] | PPA | 78/78 | 100 | [95.3% - 100%] |
| NPA | 12/12 | 100 | [75.8% - 100%] | NPA | 12/12 | 100 | [75.8% - 100%] | |
| OPA | 89/89 | 100 | [95.9% - 100%] | OPA | 90/90 | 100 | [95.9% - 100%] | |
| Anti-PMS2(EP51) | PPA | 71/71 | 100 | [94.9% - 100%] | PPA | 72/72 | 100 | [94.9% - 100%] |
| NPA | 18/18 | 100 | [82.4% - 100%] | NPA | 18/18 | 100 | [82.4% - 100%] | |
| OPA | 89/89 | 100 | [95.9% - 100%] | OPA | 90/90 | 100 | [95.9% - 100%] |
Table 8 Summary of Inter-Laboratory Reproducibilitv
iii. Reproducibility across Davs and Laboratories on BOND-III
To evaluate the inter-day and inter-site reproducibility of the BOND MMR Antibody Panel on the BOND-III Instrument, 24 FFPE CRC tissue cases were tested, including 3 intact and 3 loss cases for each of the 4 MMR proteins, at 3 testing sites. At each site, slides were stained with 1 reagent lot of the antibodies using 1 BOND-III instrument. Two staining runs were performed each day to test slides from the 24 cases on each of 5 nonconsecutive test days at each site. A total of 360 slides (6 cases × 4 antibodies × 3 sites × 5 days) were evaluated. At each site, one pathologist read and scored stained slides stained at their site in accordance with the scoring guidance. The slides stained on the same day were scored together in the same scoring session. Different scoring sessions occurred on nonconsecutive days.
PPA, NPA and OPA were calculated for point estimates along with 2-sided 95% confidence intervals by comparing the antibody status of each processed slide determined by the pathologist to the majority score. The majority score was determined by combining runs across all sites. At one site, 12 slides failed due to temperature error. New unstained slides were repeat stained and read and scored successfully.
Results of the study are summarized in Table 9 to Table 13. The overall reproducibility OPA ranged from 94.4% to 100%, PPA ranged from 91.7% to 100%, NPA ranged from 97.8% to 100%. The lower bound of the two-sided 95% Confidence Interval for OPA, PPA and NPA for each antibody are ≥ 85% with 1 exception. For MSH6, PPA was 91.7% (95% CI: 81.9% - 96.4%). All 5 discordant results were from one case and 4 of the 5 slides were stained at a single site. This
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case was investigated and the study pathologists agreed that it was challenging to interpret due to the very focal staining impacting scoring.
The results support that the BOND MMR Antibody Panel on BOND-III have acceptable levels of precision (reproducibility) across days and testing sites.
| Antibody | Agreement on BOND-III | |||
|---|---|---|---|---|
| Type | n/N* | % | 95% CI | |
| Overall call | PPA | 190/195 | 97.4% | [94.1% - 98.9%] |
| Overall call | NPA | 164/165 | 99.4% | [96.6% - 99.9%] |
| Overall call | OPA | 354/360 | 98.3% | [96.4% - 99.2%] |
| Anti-MLH1(ES05) | PPA | 45/45 | 100.0% | [92.1% - 100.0%] |
| Anti-MLH1(ES05) | NPA | 45/45 | 100.0% | [92.1% - 100.0%] |
| Anti-MLH1(ES05) | OPA | 90/90 | 100.0% | [95.9% - 100.0%] |
| Anti-MSH2(79H11) | PPA | 45/45 | 100.0% | [92.1% - 100.0%] |
| Anti-MSH2(79H11) | NPA | 45/45 | 100.0% | [92.1% - 100.0%] |
| Anti-MSH2(79H11) | OPA | 90/90 | 100.0% | [95.9% - 100.0%] |
| Anti-MSH6(EP49) | PPA | 55/60 | 91.7% | [81.9% - 96.4%] |
| Anti-MSH6(EP49) | NPA | 30/30 | 100.0% | [88.6% - 100.0%] |
| Anti-MSH6(EP49) | OPA | 85/90 | 94.4% | [87.6% - 97.6%] |
| Anti-PMS2(EP51) | PPA | 45/45 | 100.0% | [92.1% - 100.0%] |
| Anti-PMS2(EP51) | NPA | 44/45 | 97.8% | [88.4% - 99.6%] |
| Anti-PMS2(EP51) | OPA | 89/90 | 98.9% | [94.0% - 99.8%] |
Table 9: Summary of Inter-Laboratory Reproducibility
*Number of agreement/Number of pairs
Table 10: Percent Agreements for Overall and by Site--MLH1
| Anti-MLH1(ES05) | Agreement on BOND-III | ||||
|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | ||
| Overall call | PPA | 45/45 | 100% | [92.1% - 100.0%] | |
| NPA | 45/45 | 100% | [92.1% - 100.0%] | ||
| OPA | 90/90 | 100% | [95.9% - 100.0%] | ||
| Between-Day(5 non-consecutivedays) | Site 1 | PPA | 15/15 | 100% | [79.6% - 100.0%] |
| NPA | 15/15 | 100% | [79.6% - 100.0%] | ||
| OPA | 30/30 | 100% | [88.6% - 100.0%] | ||
| Site 2 | PPA | 15/15 | 100% | [79.6% - 100.0%] | |
| NPA | 15/15 | 100% | [79.6% - 100.0%] | ||
| OPA | 30/30 | 100% | [88.6% - 100.0%] | ||
| Site 3 | PPA | 15/15 | 100% | [79.6% - 100.0%] | |
| NPA | 15/15 | 100% | [79.6% - 100.0%] | ||
| OPA | 30/30 | 100% | [88.6% - 100.0%] |
*Number of agreement/Number of pairs
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| Anti-MSH2(79H11) | Agreement on BOND-III | ||||
|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | ||
| Overall call | PPA | 45/45 | 100% | [92.1% - 100.0%] | |
| NPA | 45/45 | 100% | [92.1% - 100.0%] | ||
| OPA | 90/90 | 100% | [95.9% - 100.0%] | ||
| Between-Day(5 non-consecutivedays) | Site 1 | PPA | 15/15 | 100% | [79.6% - 100.0%] |
| NPA | 15/15 | 100% | [79.6% - 100.0%] | ||
| OPA | 30/30 | 100% | [88.6% - 100.0%] | ||
| Site 2 | PPA | 15/15 | 100% | [79.6% - 100.0%] | |
| NPA | 15/15 | 100% | [79.6% - 100.0%] | ||
| OPA | 30/30 | 100% | [88.6% - 100.0%] | ||
| Site 3 | PPA | 15/15 | 100% | [79.6% - 100.0%] | |
| NPA | 15/15 | 100% | [79.6% - 100.0%] | ||
| OPA | 30/30 | 100% | [88.6% - 100.0%] |
Table 11: Percent Agreements for Overall and bv Site--MSH2
Table 12: Percent Agreements for Overall and by Site--MSH6
| Anti-MSH6(EP49) | Agreement on BOND-III | ||||
|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | ||
| Overall call | PPA | 55/60 | 91.7% | [81.9% - 96.4%] | |
| NPA | 30/30 | 100.0% | [88.6% - 100.0%] | ||
| OPA | 85/90 | 94.4% | [87.6% - 97.6%] | ||
| Between-Day (5non-consecutive days) | Site 1 | PPA | 20/20 | 100% | [83.9% - 100.0%] |
| NPA | 10/10 | 100.0% | [72.2% - 100.0%] | ||
| OPA | 30/30 | 100.0% | [88.6% - 100.0%] | ||
| Site 2 | PPA | 19/20 | 95.0% | [76.4% - 99.1%] | |
| NPA | 10/10 | 100.0% | [72.2% - 100.0%] | ||
| OPA | 29/30 | 96.7% | [83.3% - 99.4%] | ||
| Site 3 | PPA | 16/20 | 80.0% | [58.4% - 91.9%] | |
| NPA | 10/10 | 100.0% | [72.2% - 100.0%] | ||
| OPA | 26/30 | 86.7% | [70.3% - 94.7%] |
*Number of agreement/Number of pairs
{23}------------------------------------------------
| Anti-PMS2(EP51) | Agreement on BOND-III | ||||
|---|---|---|---|---|---|
| Type | n/N* | % | 95% CI | ||
| Overall call | PPA | 45/45 | 100.0% | [92.1% - 100.0%] | |
| NPA | 44/45 | 97.8% | [88.4% - 99.6%] | ||
| OPA | 89/90 | 98.9% | [94.0% - 99.8%] | ||
| Between-Day (5non-consecutive days) | Site 1 | PPA | 15/15 | 100% | [79.6% - 100.0%] |
| NPA | 15/15 | 100% | [79.6% - 100.0%] | ||
| OPA | 30/30 | 100% | [88.6% - 100.0%] | ||
| Site 2 | PPA | 15/15 | 100% | [79.6% - 100.0%] | |
| NPA | 15/15 | 100% | [79.6% - 100.0%] | ||
| OPA | 30/30 | 100% | [88.6% - 100.0%] | ||
| Site 3 | PPA | 15/15 | 100.0% | [79.6% - 100.0%] | |
| NPA | 14/15 | 93.3% | [70.2% - 98.8%] | ||
| OPA | 29/30 | 96.7% | [83.3% - 99.4%] |
Table 13: Percent Agreements for Overall and by Site--PMS2
7.1.2 Stability:
The below stability studies were conducted for the BOND MMR Antibody Panel :
- . Reagent Stability Studies
- o Real-Time Stability Tests
- Accelerated Stability Tests o
- 0 Freeze Thaw Stability Tests
- Cut Slide Stability Studies
- i. Reagent Stability Studies:
Stability testing of the BOND MMR antibodies was evaluated by performing Accelerated stability testing and Real Time shelf-life testing. The Accelerated stability was evaluated using accelerated shelf-life tests and was followed up by long term stability with Real Time shelf-life tests.
The stability of the BOND MMR antibodies was evaluated using three batches of each of the four antibodies.
Prior to the initiation of both accelerated and real-time stability testing, one batch of each antibody underwent transport simulation as preconditioning. The Transport Simulation Batches were stored for a minimum of 24 hours at 2-8°C, the required aliquots were removed from recommended storage conditions and transferred to 27-33°C for 2 days, then returned to recommended storage conditions for at least 1 day, then transferred to 37-43°C for 2 days.
A Day 0 test was performed where a minimum of 3 cases were stained and a 0-4 scale used as the reference. Day 0 slides were required to have a staining intensity of at least 2+ in the most intensely-staining tumor region to be included in the study.
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Accelerated Stability
Following transport cycling, the lot of the antibody was stored at 34-40 ℃ and at 24-30°C. Timepoints for testing at 34-40 °C were 7 and 10 weeks; timepoints for testing at 24-30°C were 14 and 20 weeks. If a testing failure occurred at either timepoint for 34-40 ℃ then the study reverted to testing units stored at 24-30°C. If units stored at 24-30°C failed then accelerated stability was discontinued and real time data used. At each time point, staining intensities of the slides were compared with the ones stained at Day 0. The intensity had to be at least 2+ for all slides to pass the acceptance criteria.
Real Time Shelf-Life Tests
Real time stability was evaluated for three conditions: long term stability (Real-time Shelf Life Test), in-use stability (In Use Test), transport simulation (Transport Test). The study was continued up to 545 Days (18-month timepoint including a safety margin)
-
- The in-use stability test batch was stored at 2-8°C until required for testing where an 'In Use' aliquot of the antibody for each time points was cycled for 35 cycles by storing at 34-40°C for 7 hours. At the end of each 7 hour period containers were returned to 2-8°C. The units were tested on or after 35 cycles.
-
- The transport simulation batches were stored for a minimum of 24 hours at 2-8°C, the required aliquots were removed from recommended storage conditions and transferred to 27-339C for 2 days, then returned to recommended storage conditions for at least 1 day, then transferred to 37-43°C for 2 days. Units were returned thereafter to their recommended storage conditions for a period of at least 24 hours before testing.
-
- The real time stability test for the three batches were performed on Day 0 and then subsequent time points. Tissues stained at each time point were compared to a Day 0 control tissue and a -77 - -83°C control.
Freeze-Thaw Tests
The freeze-thaw batch underwent freeze-thaw preconditioning prior to day 0 testing. Three vials of the batch were stored at -77 - -83°C for a minimum of 24 hours. The aliquots were then placed at 2-8℃ to thaw overnight and were tested alongside and compared to an aliquot stored only at 2-8°C. The freezethaw batch was not subjected to transport simulation.
At each time point, staining intensities of the slides were compared with the ones stained at Day 0. The intensity was required to be at least 2+ for all slides to pass the acceptance criteria. If the test failed, then study either reverted to the lower temperatures or in the case of a real time failure the study would be aborted.
Results
All four antibodies passed the transport simulation testing and the freeze-thaw testing. The anti-MLH1, anti-MSH2 and anti-PMS2 antibodies passed real
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time stability testing at 545 days. This supports a maximum shelf life for these antibodies of 12 months. The antibody of anti-MSH6 passed the accelerated stability testing at 7 weeks and the real time stability testing at 365 days. This supports a maximum shelf life for this antibody of 7 months.
ii. Cut slide Stability:
To evaluate the stability of the cut slides, 60 x 3um sections were cut from each of three FFPE CRC tissue cases for a total of 180 slides. Six slides of each FFPE CRC tissue case were stained on Day 0 on the BOND-III system with one lot of each of the four antibodies along with the negative reagent controls, scored on a 0-4+ scale and used as the reference. All three cases are intact for all four MMR proteins with the staining intensity being at least 2+ in the most intensely-staining tumor region. The remaining slides of each FFPE CRC tissue case were stored at ambient/room temperature for 7, 14, 28, 42, 56, 70 and 77 days. At each timepoint, six slides of each FFPE CRC tissue case were stained the same way as above and compared with the ones stained at baseline. In addition, at each of these timepoints, freshly cut sections of the same three tissue cases were stained with each of the four antibodies as a quality control. The intensity was required to be at least 2+ to pass the acceptance criteria. Results of the study showed that the epitopes recognized by each of the four antibodies in FFPE CRC tissue cases remain stable for a period of time up to and including 11 weeks post sectioning when the tissue sections are mounted onto slides and stored at ambient/room temperature, therefore supporting epitope stability claims in cut sections of up to 10 weeks.
7.1.3 Analytical specificity:
Analytical specificity was addressed in two separate studies for each of the MMR panel antibodies. The first addressed antibody specificity and the second addressed immunoreactivity in normal and neoplastic tumor specimen.
Western Blot and IHC: i.
Western blot analyses were conducted to demonstrate that the antibodies specifically detect the proteins of predicted molecular weight for each of the 4 BOND MMR antibodies using cell lines with known MMR loss or intact status. Cell lines used in the study were generated using lysates from the PANC-1 (human epithelial pancreas/duct carcinoma) for MLH1 and MSH2 and lysates from the A431 (human epidermoid carcinoma) for MSH6 and PMS2. Western Blots confirmed presence of reactive bands at expected molecular weighs for each of the 4 MMR proteins.
IHC tests were conducted using formalin-fixed, paraffin-embedded cell lines described in the table below to assess nonspecific binding in the context of use. The results of the IHC with engineered cell lines was consistent with expected reactivity.
Table 14 Western Blot Analysis
{26}------------------------------------------------
| Antibody | Formalin-Fixed, Paraffin-Embedded CellLines for IHC Testing |
|---|---|
| MMR INTACT | Breast adenocarcinoma cell line that carriesno specific MMR mutations |
| MLH1 & PMS2 LOSS | Prostate carcinoma cell line with a splice sitemutation between exon 1 and exon 2 of theMLH1 gene which causes the deletion of 5coding nucleotides |
| MSH2 LOSS | Colon adenocarcinoma cell line that carries ahomozygous deletion of exons 3 to 8 in theMSH2 gene |
| MSH6 LOSS | A colon adenocarcinoma cell line that isknown to harbour a 1 base pair deletionmutation in one allele of the MSH6 gene anda sequence deletion/insertion involving 5 basepairs in the other allele |
The combined results from western blots and cell line IHC demonstrated specific antibody reactivity for each of the 4 MMR proteins included in the BOND MMR antibody panel.
ii. Immunoreactivity:
Immunoreactivity of the BOND MMR antibodies was tested across multiple cases of normal and tumor tissue types. The summary of staining results with the panel antibodies is shown in Table 15 to Table 17. Staining of these ubiquitously expressed nuclear proteins was observed in normal and neoplastic tissues as expected.
| Tissue | No. of IHC positive cases / total cases | ||||
|---|---|---|---|---|---|
| MLH1 | MSH2 | MSH6 | PMS2 | ||
| Cerebrum,grey mattertissue | 3/3 | 3/3 | 3/3 | 3/3 | |
| Cerebrum,white mattertissue | 3/3 | 3/3 | 3/3 | 3/3 | |
| Cerebellum | 3/3 | 3/3 | 3/3 | 3/3 | |
| Adrenalgland | 3/3 | 3/3 | 2/3 | 3/3 | |
| Ovary | 3/3 | 3/3 | 3/3 | 3/3 | |
| Pancreas | 3/3 | 3/3 | 3/3 | 3/3 | |
| Tissue | No. of IHC positive cases / total cases | ||||
| MLH1 | MSH2 | MSH6 | PMS2 | ||
| Parathyroid | 3/3 | 3/3 | 3/3 | 3/3 | |
| Pituitary | 3/3 | 3/3 | 3/3 | 3/3 | |
| Testis | 3/3 | 3/3 | 3/3 | 3/3 | |
| Thyroidgland | 3/3 | 3/3 | 3/3 | 3/3 | |
| Breast | 3/3 | 3/3 | 3/3 | 3/3 | |
| Spleen | 3/3 | 3/3 | 3/3 | 3/3 | |
| Tonsil | 3/3 | 3/3 | 3/3 | 3/3 | |
| Thymusgland | 3/3 | 3/3 | 3/3 | 3/3 | |
| Bonemarrow | 3/3 | 3/3 | 3/3 | 3/3 | |
| Lung | 3/3 | 3/3 | 3/3 | 3/3 | |
| Heart,cardiacmuscle | 2/3 | 3/3 | 1/3 | 1/3 | |
| Esophagus | 3/3 | 3/3 | 3/3 | 3/3 | |
| Stomach | 3/3 | 3/3 | 3/3 | 3/3 | |
| Smallintestine,ileum | 3/3 | 3/3 | 3/3 | 3/3 | |
| Colon | 3/3 | 3/3 | 3/3 | 3/3 | |
| Liver | 3/3 | 3/3 | 3/3 | 3/3 | |
| Salivarygland | 3/3 | 3/3 | 3/3 | 3/3 | |
| Kidney | 3/3 | 3/3 | 3/3 | 3/3 | |
| Prostate | 3/3 | 3/3 | 3/3 | 3/3 | |
| Uterus,endometrium | 3/3 | 3/3 | 3/3 | 3/3 | |
| Cervix | 3/3 | 3/3 | 3/3 | 3/3 | |
| Skeletalmuscle | 2/3 | 3/3 | 2/3 | 1/3 | |
| Skin | 3/3 | 3/3 | 3/3 | 3/3 | |
| Peripheralnerve | 2/3 | 2/3 | 1/3 | 1/3 | |
| Mesothelium, umbilicalcord | 3/3 | 3/3 | 3/3 | 3/3 | |
| Larynx | 3/3 | 3/3 | 3/3 | 3/3 | |
| Bladder | 3/3 | 3/3 | 3/3 | 3/3 | |
| No. of IHC positive cases / total cases | |||||
| Tissue | Pathology | MLH1 | MSH2 | MSH6 | PMS2 |
| Bladder,urinary | Transitional cellcarcinoma | 2/2 | 2/2 | 2/2 | 2/2 |
| Breast | Fibroadenoma | 2/2 | 2/2 | 2/2 | 2/2 |
| Breast | Invasive ductalcarcinoma | 2/2 | 2/2 | 2/2 | 2/2 |
| Bone, tibia | Osteosarcoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Bone,scapula | Chondrosarcoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Brain | Meningioma,fibroblastic | 1/1 | 1/1 | 1/1 | 1/1 |
| Brain | Astrocytoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Esophagus | Squamous cellcarcinoma | 2/2 | 2/2 | 2/2 | 2/2 |
| Stomach | Adenocarcinoma | 3/3 | 3/3 | 3/3 | 3/3 |
| Intestine,smallintestine | Adenoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Intestine,smallintestine | Adenocarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Intestine,colon | Adenoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Intestine,colon | Adenocarcinoma | 3/3 | 3/3 | 3/3 | 3/3 |
| Intestine,rectum | Adenocarcinoma | 2/3 | 3/3 | 3/3 | 2/3 |
| Kidney | Clear cellcarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Liver | Hepatocellularcarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Lung | Adenocarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Lung | Small cellcarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Tissue | Pathology | No. of IHC positive cases / total cases | |||
| MLH1 | MSH2 | MSH6 | PMS2 | ||
| Lymphnode, neck | Lymphoma,Hodgkinlymphoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Lymphnode, neck | Lymphoma,anaplastic large celllymphoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Head andneck, oralcavity, hardpalate | Adenocarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Tongue | Squamous cellcarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Head andneck,nasopharynx | Nasopharyngealcarcinoma, NPC | 1/1 | 1/1 | 1/1 | 1/1 |
| Ovary | Granulosa celltumor | 1/1 | 1/1 | 1/1 | 1/1 |
| Ovary | Adenocarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Ovary | Endometrioidadenocarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Pancreas | Adenocarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Prostate | Adenocarcinoma | 2/2 | 2/2 | 2/2 | 2/2 |
| Skin, trunk | Squamous cellcarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Head andneck, nasalcavity | Melanoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Testis | Seminoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Thyroid | Adenoma | 2/2 | 2/2 | 2/2 | 2/2 |
| Thyroid | Follicularcarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Thyroid | Follicular papillaryadenocarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| No. of IHC positive cases / total cases | |||||
| Tissue | Pathology | MLH1 | MSH2 | MSH6 | PMS2 |
| Uterus,cervix | Squamous cellcarcinoma | 2/2 | 2/2 | 2/2 | 2/2 |
| Uterus,endometrium | Adenocarcinoma | 2/2 | 2/2 | 2/2 | 2/2 |
| Liver | Metastatic colonadenocarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Lung | Metastatic cancersfromgastrointestinal site | 1/1 | 1/1 | 1/1 | 1/1 |
| Ovary | Metastatic colonsignet ring cellcarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Lymphnode | Metastaticesophagussquamous cellcarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
Table 15 Immunoreactivity in FFPE normal tissues
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Table 16 Immunoreactivity in a variety of FFPE neoplastic tissues
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Table 17 Immunoreactivity in FFPE colorectal cancer tissues
| Tissue | Pathology | No. of IHC positive cases / total cases | |||
|---|---|---|---|---|---|
| MLH1 | MSH2 | MSH6 | PMS2 | ||
| Colon | Adenocarcinoma | 63/68 | 67/68 | 66/68 | 63/68 |
| Colon | Partly mucinousadenocarcinoma | 12/12 | 11/12 | 11/12 | 12/12 |
| Colon | Mucinousadenocarcinoma | 8/9 | 9/9 | 8/9 | 8/9 |
| Colon | Squamouscarcinoma | 1/1 | 1/1 | 1/1 | 1/1 |
| Rectum | Adenocarcinoma | 7/8 | 8/8 | 8/8 | 7/8 |
| Rectum | Partly mucinousadenocarcinoma | 3/3 | 3/3 | 3/3 | 3/3 |
| Rectum | Mucinousadenocarcinoma | 0/1 | 1/1 | 1/1 | 0/1 |
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7.2 Clinical Performance:
The clinical validity of the BOND MMR Antibody Panel was determined in a study that assessed agreement between test results obtained from the BOND MMR Antibody Panel and a molecular test based on a DNA sequencing panel validated for detecting presence of pathogenic mutations likely to affect MMR protein expression in CRC. The purpose of the study was to evaluate the ability of the panel to correctly aid in the identification of patients needing additional Lynch syndrome genetic testing.
Eligible remnant FFPE CRC tissues ("cases") were procured, with at least 100 sequential cases with unknown mismatch repair (MMR) status (also referred to as the Sequential cohort) and at least 48 cases with known MMR protein deficiencies (also referred to as the Enrichment cohort). Specimens from the two cohorts were combined, randomized and processed to create slides evaluation with BOND MMR Antibody Panel testing and the DNA sequencing testing. Staining with the BOND MMR Antibody Panel was performed on BOND-III system in accordance with the instructions for use (IFUs). One pathologist at the testing site read and scored BOND MMR Antibody Panel stained slides in accordance with the scoring guidance.
Inclusion Criteria:
- FFPE CRC tissue block with matched normal blood, saliva, or FFPE tissue and
- (Sequential cohort) With unknown MMR protein status, sequentially obtained ● from a single US site or
- (Enrichment cohort) With known immunohistochemistry (IHC) MMR protein ● status obtained from multiple sites, including:
- 0 MLH1 and PMS2 loss
- MSH2 and MSH6 loss O
- isolated PMS2 loss O
- O isolated MSH6 loss
Exclusion Criteria:
- Tissue requirements for comparator DNA sequencing panel were not met ●
- . Lack of sufficient tumor.
There were 155 cases procured for the study. One case was excluded due to not meeting the Enrichment cohort inclusion criteria. Of the remaining 154 cases eligible for the study, One case had insufficient tumor for both DNA sequencing and BOND MMR Antibody Panel testing, three cases had insufficient tumor for DNA sequencing, and seven cases did not have MMR Stained Slides interpreted due to the H&E Slide showing less than 50 viable tumor cells present for evaluation, not meeting the tissue requirements required by the BOND MMR Antibody Panel. Therefore, of the 154 eligible cases, 143 were tested by both methods (94 sequential cases and 49 enriched cases). Assessment of the demographic data associated with the study specimens determined that it was consistent with the intended use population.
| MLH1 andPMS2 loss | MSH2 andMSH6 loss | PMS2 loss | MSH6 loss | |
|---|---|---|---|---|
| # Cases | 25 | 14 | 6 | 4 |
Table 18 MMR Status of the Enrichment Cohort
BOND MMR Antibody Panel results (MMR loss or MMR intact) were compared to the
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DNA sequencing panel results for pathogenic mutation(s) in the combined cohort (Sequential and Enrichment cohorts), and in the Sequential cohort and the Enrichment cohort, respectively. PPA, NPA, and OPA along with 2-sided 95% Wilson score confidence intervals (CIs) were calculated.
Of the 143 specimens tested by the BOND MMR Antibody Panel and the DNA sequencing panel, ten (10) cases had invalid DNA sequencing panel results due to testing not meeting quality control standards and were excluded from the agreement analysis. The remaining 133 of 143 cases had valid results by both methods and were evaluable. Results of the study are summarized in Table 19 to Table 21. The point estimates of agreement between the BOND MMR Antibody Panel and the DNA sequencing panel in the combined cohort were PPA 93.3%, NPA 95.9% and OPA 94.7%.
| Combined Cohort | DNA Sequencing Panel Results | ||||
|---|---|---|---|---|---|
| PathogenicMutations(s) | NoPathogenicMutations(s) | Invalid | Total | ||
| BONDMMRAntibodyPanelResults | MMRProteinLoss | 56 | 3 | 4 | 63 |
| MMRProteinIntact | 4 | 70 | 6 | 80 | |
| Total | 60 | 73 | 10 | 143 | |
| Agreement | |||||
| Number ofAgreements | Number ofPairs | % Agreement | 95%ConfidenceInterval | ||
| PPA | 56 | 60 | 93.3% | [84.1% -97.4%] | |
| NPA | 70 | 73 | 95.9% | [88.6% -98.6%] | |
| OPA | 126 | 133 | 94.7% | [89.5% -97.4%] |
Table 19 Agreement between BOND MMR Antibody Panel Results and DNA Sequencing Panel Results: Combined Cohort
Table 20 Agreement between BOND MMR Antibody Panel Results and DNA Seauencing Panel Results· Sequential Cohort
| Sequential Cohort | DNA Sequencing Panel Results | ||||
|---|---|---|---|---|---|
| Pathogenic Mutations(s) | No Pathogenic Mutations(s) | Invalid | Total | ||
| BONDMMRAntibodyPanelResults | MMRProteinLoss | 15 | 1 | 3 | 19 |
| MMRProteinIntact | 3 | 66 | 6 | 75 |
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| Total | 18 | 67 | 9 | 94 | |
|---|---|---|---|---|---|
| Agreement | |||||
| Number ofAgreements | Number ofPairs | % Agreement | 95%ConfidenceInterval | ||
| PPA | 15 | 18 | 83.3% | [60.8% -94.2%] | |
| NPA | 66 | 67 | 98.5% | [92.0% -99.7%] | |
| OPA | 81 | 85 | 95.3% | [88.5% -98.2%] |
Table 21 Agreement between BOND MMR Antibody Panel Results and DNA Sequencing Panel Results: Enrichment Cohort
| Enrichment Cohort | DNA Sequencing Panel Results | ||||
|---|---|---|---|---|---|
| PathogenicMutations(s) | NoPathogenicMutations(s) | Invalid | Total | ||
| BONDMMRAntibodyPanelResults | MMRProteinLoss | 41 | 2 | 1 | 44 |
| MMRProteinIntact | 1 | 4 | 0 | 5 | |
| Total | 42 | 6 | 1 | 49 | |
| Agreement | |||||
| Number ofAgreements | Number ofPairs | % Agreement | 95%ConfidenceInterval | ||
| PPA | 41 | 42 | 97.6% | [87.7% -99.6%] | |
| NPA | 4 | 6 | 66.7% | [30.0% -90.3%] | |
| OPA | 45 | 48 | 93.8% | [83.2% -97.9%] |
Accuracy by MMR proteins: The concordance for MMR gene mutation status by the DNA sequencing panel and MMR protein loss by the BOND MMR Antibody Panel was also compared individually for each antibody. When compared to the results to the DNA sequencing panel, the OPA of each MMR protein ranged from 94.0% to 98.5%, the PPA ranged from 65.0% to 97.5%, the NPA ranged from 95.7% to 99.2%. Results are summarized in Table 22 to Table 24.
MLH1: Of the 37 MLH1 mutation positive cases, 33 had MLH1 protein loss when assessed by the BOND MMR Antibody Panel. Of the 4 MLH1 mutation positive cases with discordant BOND MMR Antibody results (i.e., intact), the following was found:
- One case had MLH1 promoter hypermethylation ●
- One case had a single somatic MLH1 pathogenic mutation with Copy-neutral ● loss of heterozygosity (CN-LOH)
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- One case had 2 MLH1 somatic mutations as well as MLH1 promoter ● hypermethylation
- One case had a single somatic MLH1 pathogenic mutation and microsatellite instability-high (MSI-H) status.
Three of the cases also showed PMS2 protein loss.
MSH2: Of the 13 MSH2 mutation positive cases, 12 had MSH2 protein loss when assessed by the BOND MMR Antibody Panel. A single MSH2 mutation positive case with discordant BOND MMR Antibody results (i.e., intact) was identified. This case was characterized by a single MSH2 pathogenic mutation combined with MSI-H status; an MSH2 Variant of Unknown Significance (VUS) was also identified. MSH6 protein was also intact.
MSH6: Of the 20 MSH6 mutation positive cases, 13 had MSH6 protein loss when assessed by the BOND MMR Antibody Panel. Of the 7 MSH6 mutation positive cases with discordant BOND MMR Antibody results (ie, MSH6 intact), the cases were characterized as follows:
- A single MSH2 pathogenic mutation combined with MSI-H status; an MSH2 ● VUS was also identified. MSH2 protein was preserved.
- One pathogenic variant of somatic origin in the MSH2 gene, MSI-H status and ● MSH2 protein loss.
- Germline pathogenic mutation in MSH2 with CN-LOH and MSH2 protein loss, as well as a single germline pathogenic mutation in PMS2 and a single somatic pathogenic mutation in MSH6.
- A germline and a somatic mutation in MSH6 as well as multiple VUS.
- Two somatic mutations in MSH6 consistent with biallelic somatic mutations as ● well as a single germline mutation in PMS2 with PMS2 protein loss.
- . Two pathogenic variants of somatic origin in MSH6 gene, and one pathogenic mutation of somatic mutation in MSH2, MSI-High status, and a PMS2 VUS was also identified.
- One pathogenic variant of somatic origin in MSH6 gene with MLH1 and ● PMS2 protein loss, as well as MSI-High.
Of the 7 MSH6 mutation positive cases with discordant BOND MMR Antibody results (i.e. MSH6 intact), 4 demonstrated IHC loss when stained using the BOND MMR Antibody Panel and these cases should receive additional diagnostic testing consistent with clinical practice guidelines for diagnosis of Lynch syndrome.
PMS2: Of the 40 PMS2 mutation positive cases, 39 had PMS2 protein loss when assessed by the BOND MMR Antibody Panel. A single PMS2 mutation positive cases with discordant BOND MMR Antibody results (i.e., intact) was identified. This case was characterized by a MLH1 promoter hypermethylation combined with MSI-S status. MLH1 protein staining was also intact.
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| Combined Cohort | DNA Sequencing Panel Results | Total | |||||
|---|---|---|---|---|---|---|---|
| PathogenicMutations(s) | No PathogenicMutations(s) | Invalid | |||||
| BONDMMRanti-MLH1Results | ProteinLossProteinIntact | 33 | 1 | 3 | 37 | ||
| 4 | 95 | 7 | 106 | ||||
| Total | 37 | 96 | 10 | 143 | |||
| BONDMMRanti-MSH2Results | ProteinLossProteinIntact | 12 | 1 | 1 | 14 | ||
| 1 | 120 | 8 | 129 | ||||
| Total | 13 | 121 | 9 | 143 | |||
| BONDMMRanti-MSH6Results | ProteinLossProteinIntact | 13 | 1 | 1 | 15 | ||
| 7 | 113 | 8 | 128 | ||||
| Total | 20 | 114 | 9 | 143 | |||
| BONDMMRanti-PMS2Results | ProteinLossProteinIntact | 39 | 4 | 3 | 46 | ||
| 1 | 89 | 7 | 97 | ||||
| Total | 40 | 93 | 10 | 143 | |||
| Number ofAgreements | Number ofPairs | %Agreement | 95%ConfidenceInterval | ||||
| Anti-MLH1 | PPA | 33 | 37 | 89.2% | [75.3% - 95.7%] | ||
| NPA | 95 | 96 | 99.0% | [94.3% - 99.8%] | |||
| OPA | 128 | 133 | 96.2% | [91.5% - 98.4%] | |||
| Anti-MSH2 | PPA | 12 | 13 | 92.3% | [66.7% - 98.6%] | ||
| NPA | 120 | 121 | 99.2% | [95.5% - 99.9%] | |||
| OPA | 132 | 134 | 98.5% | [94.7% - 99.6%] | |||
| Anti-MSH6 | PPA | 13 | 20 | 65.0% | [43.3% - 81.9%] | ||
| NPA | 113 | 114 | 99.1% | [95.2% - 99.8%] | |||
| OPA | 126 | 134 | 94.0% | [88.7% - 96.9%] | |||
| Anti-PMS2 | PPA | 39 | 40 | 97.5% | [87.1% - 99.6%] | ||
| NPA | 89 | 93 | 95.7% | [89.5% - 98.3%] | |||
| OPA | 128 | 133 | 96.2% | [91.5% - 98.4%] |
Table 22 Agreement for Each Protein between BOND MMR Antibody Panel Results and DNA Sequencing Panel Results: Combined Cohort
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| Sequential Cohort | DNA Sequencing Panel Results | Total | ||||
|---|---|---|---|---|---|---|
| PathogenicMutations(s) | No PathogenicMutations(s) | Invalid | ||||
| BONDMMRanti-MLH1Results | Protein Loss | 10 | 1 | 3 | 14 | |
| Protein Intact | 2 | 72 | 6 | 80 | ||
| Total | 12 | 73 | 9 | 94 | ||
| BONDMMRanti-MSH2Results | Protein Loss | 3 | 0 | 0 | 3 | |
| Protein Intact | 0 | 83 | 8 | 91 | ||
| Total | 3 | 83 | 8 | 94 | ||
| BONDMMRanti-MSH6Results | Protein Loss | 2 | 0 | 0 | 2 | |
| Protein Intact | 4 | 80 | 8 | 92 | ||
| Total | 6 | 80 | 8 | 94 | ||
| BONDMMRanti-PMS2Results | Protein Loss | 11 | 2 | 3 | 16 | |
| Protein Intact | 1 | 71 | 6 | 78 | ||
| Total | 12 | 73 | 9 | 94 | ||
| Agreement | ||||||
| Number ofAgreements | Number ofPairs | %Agreement | 95%ConfidenceInterval | |||
| Anti-MLH1 | PPA | 10 | 12 | 83.3% | [55.2% - 95.3%] | |
| NPA | 72 | 73 | 98.6% | [92.6% - 99.8%] | ||
| OPA | 82 | 85 | 96.5% | [90.1% - 98.8%] | ||
| Anti-MSH2 | PPA | 3 | 3 | 100.0% | [43.9% -100.0%] | |
| NPA | 83 | 83 | 100.0% | [95.6% -100.0%] | ||
| OPA | 86 | 86 | 100.0% | [95.7% -100.0%] | ||
| Anti-MSH6 | PPA | 2 | 6 | 33.3% | [9.7% - 70.0%] | |
| NPA | 80 | 80 | 100.0% | [95.4% -100.0%] | ||
| OPA | 82 | 86 | 95.3% | [88.6% - 98.2%] | ||
| Anti-PMS2 | ||||||
| PPA | 11 | 12 | 91.7% | [64.6% - 98.5%] | ||
| NPA | 71 | 73 | 97.3% | [90.5% - 99.2%] | ||
| OPA | 82 | 85 | 96.5% | [90.1% - 98.8%] |
Table 23 Agreement for Each Protein between BOND MMR Antibody Panel Results and DNA Sequencing Panel Results: Sequential Cohort
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Table 24 Agreement for Each Protein between BOND MMR Antibody Panel Results and DNA Sequencing Panel Results: Enrichment Cohort
| Enrichment Cohort | DNA Sequencing Panel Results | ||||||
|---|---|---|---|---|---|---|---|
| PathogenicMutations(s) | No PathogenicMutations(s) | Invalid | Total | ||||
| BOND | Protein | Loss | 23 | 0 | 0 | 23 | |
| MMR | Protein | Intact | 2 | 23 | 1 | 26 | |
| anti-MLH1 | Results | ||||||
| Total | 25 | 23 | 1 | 49 | |||
| BOND | Protein | Loss | 9 | 1 | 1 | 11 | |
| MMR | Protein | Intact | 1 | 37 | 0 | 38 | |
| anti-MSH2 | Results | ||||||
| Total | 10 | 38 | 1 | 49 | |||
| BOND | Protein | Loss | 11 | 1 | 1 | 13 | |
| MMR | Protein | Intact | 3 | 33 | 0 | 36 | |
| anti-MSH6 | Results | ||||||
| Total | 14 | 34 | 1 | 49 | |||
| BOND | Protein | Loss | 28 | 2 | 0 | 30 | |
| MMR | Protein | Intact | 0 | 18 | 1 | 19 | |
| anti-PMS2 | Results | ||||||
| Total | 28 | 20 | 1 | 49 | |||
| Agreement | |||||||
| Number ofAgreements | Number ofPairs | %Agreement | 95% ConfidenceInterval | ||||
| Anti- | MLH1 | PPA 23 | 25 | 92.0% | [75.0% - 97.8%] | ||
| NPA 23 | 23 | 100.0% | [85.7% - 100.0%] | ||||
| OPA 46 | 48 | 95.8% | [86.0% - 98.8%] | ||||
| Anti- | MSH2 | PPA 9 | 10 | 90.0% | [59.6% - 98.2%] | ||
| NPA 37 | 38 | 97.4% | [86.5% - 99.5%] | ||||
| OPA 46 | 48 | 95.8% | [86.0% - 98.8%] | ||||
| Anti- | MSH6 | PPA 11 | 14 | 78.6% | [52.4% - 92.4%] | ||
| NPA 33 | 34 | 97.1% | [85.1% - 99.5%] | ||||
| OPA 44 | 48 | 91.7% | [80.4% - 96.7%] |
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| Anti- | |||||
|---|---|---|---|---|---|
| PMS2 | PPA | 28 | 28 | 100.0% | [87.9% - 100.0%] |
| NPA | 18 | 20 | 90.0% | [69.9% - 97.2%] | |
| OPA | 46 | 48 | 95.8% | [86.0% - 98.8%] |
8. Conclusions
The results of performed testing supports a determination of Substantial Equivalence (SE) of the BOND MMR Antibody Panel [subject device] when compared to the VENTANA MMR IHC Panel (DEN170030) [predicate device].
References 9.
-
- World Cancer Research Fund International: http://www.wcrf.org/int/cancer-factsfigures/data-specific-cancers/colorectal-cancer-statistics
-
- National Comprehensive Cancer Network Clinical Practice Guidelines in Oncology (NCCN Guidelines®) Colorectal Cancer Screening 2.2012
- 3.Sehgal R, et al. Lynch Syndrome: An updated review. Genes (2014) 5; 497-507.
-
- Boland CR, et al. Microsatellite instability in colorectal cancer. Gastroenterology (2010) 138: 6; 2073-2087.
§ 864.1866 Lynch syndrome test systems.
(a)
Identification. Lynch syndrome test systems are in vitro diagnostic tests for use with tumor tissue to identify previously diagnosed cancer patients at risk for having Lynch syndrome.(b)
Classification. Class II (special controls). The special controls for this device are:(1) Premarket notification submissions must include the following information, as appropriate:
(i) A detailed description of all test components, including all provided reagents, and required but not provided, ancillary reagents.
(ii) A detailed description of instrumentation and equipment, including illustrations or photographs of non-standard equipment or manuals.
(iii) Detailed documentation of the device software, including, but not limited to, standalone software applications and hardware-based devices that incorporate software.
(iv) A detailed description of quality controls including appropriate positive and negative controls that are recommended or provided.
(v) Detailed specifications for sample collection, processing, and storage.
(vi) A detailed description of methodology and assay procedure.
(vii) A description of the assay cut-off (
i.e., the medical decision point between positive and negative results) or other relevant criteria that distinguishes positive and negative results, or ordinal classes of marker expression, including the rationale for the chosen cut-off or other relevant criteria and results supporting validation of the cut-off.(viii) Detailed specification of the criteria for test result interpretation and reporting.
(ix) Detailed information demonstrating the performance characteristics of the device, including:
(A) Data from an appropriate study demonstrating clinical accuracy using well-characterized clinical specimens representative of the intended use population (
i.e., concordance to Deoxyribonucleic Acid (DNA) sequencing results of the Lynch syndrome associated genes or method comparison to the predicate device using samples with known alterations in genes representative of Lynch syndrome). Pre-specified acceptance criteria must be provided and followed.(B) Appropriate device reproducibility data investigating all sources of variance (
e.g., for distributed tests, data generated using a minimum of three sites, of which at least two sites must be external sites). Each site must perform testing over a minimum of 5 nonconsecutive days evaluating a sample panel that spans the claimed measuring range, and includes the clinical threshold. Pre-specified acceptance criteria must be provided and followed.(C) Data demonstrating reader reproducibility, both within-reader and between-reader, assessed by three readers over 3 nonconsecutive days at each site, including a 2 week washout period between reads, as appropriate.
(D) Device precision data using clinical samples spanning the measuring range and controls to evaluate the within-lot, between-lot, within-run, between run, and total variation.
(E) Analytical specificity studies including as appropriate, western blots, peptide inhibition, testing in normal tissues and neoplastic tissues, interference by endogenous and exogenous substances, and cross-reactivity and cross contamination testing.
(F) Device analytical sensitivity data generated by testing an adequate number of samples from individuals with the target condition such that prevalence of the biomarker in the target population is established.
(G) Device stability data, including real-time stability and in-use stability, and stability evaluating various storage times, temperatures, and freeze-thaw conditions, as appropriate.
(H) The staining performance criteria assessed must include overall staining acceptability, background staining acceptability, and morphology acceptability, as appropriate.
(I) Appropriate training requirements for users, including interpretation manual, as applicable.
(J) Identification of risk mitigation elements used by the device, including a description of all additional procedures, methods, and practices incorporated into the instructions for use that mitigate risks associated with testing.
(2) The device's § 809.10(b) of this chapter compliant labeling must include a detailed description of the protocol, including the information described in paragraphs (b)(1)(i) through (viii) of this section, as appropriate, and a detailed description of the performance studies performed and the summary of the results, including those that relate to paragraph (b)(1)(ix) of this section, as appropriate.