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510(k) Data Aggregation
(434 days)
Trade/Device Name: BCR-ABL1 (p210) %IS Kit (Digital PCR Method) Regulation Number: 21 CFR 866.6060
chain reaction (ddPCR) based nucleic acid
amplification |
| Regulation section: | 21 CFR 866.6060
The BCR-ABL1 (p210) %IS Kit (Digital PCR Method) is an in vitro nucleic acid amplification test for the quantitation of BCR-ABL1 and ABL1 transcripts in total RNA from whole blood of diagnosed t (9;22) positive Chronic Myeloid Leukemia (CML) adult patients expressing BCR-ABL1 fusion transcripts type e13a2 and/or e14a2. The BCR-ABL1 (p210) %IS Kit (Digital PCR Method) is a reverse transcription-quantitative PCR performed on the Sniper Digital PCR All-in-One System and is intended to measure BCR-ABL1 to ABL1, expressed as a log molecular reduction (MR value) from a baseline of 100% on the International Scale, in t (9:22) positive CML patients during monitoring of treatment with Tyrosine Kinase Inhibitors (TKIs).
The BCR-ABL1 (p210) %IS Kit (Digital PCR Method) is intended for use only on the Sniper Digital PCR All-in-One System.
The test does not differentiate between e13a2 or e14a2 fusion transcripts and does not monitor other rare fusion transcripts resulting from t (9:22). This test is not intended for the diagnosis of CML.
The BCR-ABL1 (p210) %IS Kit (Digital PCR Method) is designed for detection of the BCR-ABL1 fusion gene (p210) and ABL1 gene, with specific primers and specific fluorescence probes. The test process includes three parts. The first part is to extract ribonucleic acid (RNA) from peripheral blood of CML patients. The second part is to detect BCR-ABL1 fusion gene (p210) and ABL1 internal reference gene in RNA samples by RT-dPCR (Reverse Transcription-Droplet PCR) reaction solution using the Sniper Digital PCR All-in-One System (DQ24-Dx). The third part is to analyze the results.
The Sniper Digital PCR All-in-One System consists of one instrument, which can be used together with it's supporting consumables and BCR-ABL1 (p210) %IS Kit (Digital PCR Method) to complete the detection of samples.
The Sniper Digital PCR All-in-One System divides the sample into about 20000 droplets and carries out PCR amplification, read the number of positive and negative droplets through fluorescent signals, and then calculate the concentration of nucleic acid quantitatively according to the volume of the droplets and the principle of Poisson Distribution.
DQ24-Dx-Sight Software (v1.0.2) is used to control the system and analyze test results. This software is embedded in the Sniper Digital PCR All-in-One System.
Here's a breakdown of the acceptance criteria and study detailed in the provided document:
Acceptance Criteria and Device Performance
Acceptance Criteria | Reported Device Performance |
---|---|
Precision (CV, %) requirements for MR values in multi-site study: | All acceptance criteria for precision were satisfied. |
- MR0.3-MR2.0: ≤ 10% | - MR1.0 (e13a2, e14a2, mix): Total CV% range 1.85% - 2.38% |
- MR2.1-MR3.49: ≤ 15% | - MR2.0 (e13a2, e14a2, mix): Total CV% range 1.54% - 1.82% |
- MR3.5-MR4.0: ≤ 20% | - MR3.0 (e13a2, e14a2, mix): Total CV% range 2.37% - 3.11% |
- LOQ: ≤ 20% | - MR4.0 (e13a2, e14a2, mix): Total CV% range 2.31% - 3.43% |
- MR4.5 (e13a2, e14a2, mix): Total CV% range 4.95% - 5.68% | |
Controls & Calibrators Precision (CV, %) in multi-site study: | Calibrators 10%IS MR CV: 2.10%, %IS CV: 5.00% |
Calibrators 0.1%IS MR CV: 1.79%, %IS CV: 12.20% | |
Positive control 1 MR CV: 2.14%, %IS CV: 5.18% | |
Positive control 2 MR CV: 2.68%, %IS CV: 23.86% | |
Precision (CV, %) requirements for MR values in batch-to-batch study: | All acceptance criteria for batch-to-batch precision were satisfied. |
- MR0.3-MR2.0: 0.95. | Intercept A (95% CI): 0.17 (0.13-0.22), Slope B (95% CI): 0.99 (0.97-1.01). Spearman correlation coefficient: 0.988 (P |
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(254 days)
GeneXpert Dx System, GeneXpert Infinity-48s and GeneXpert Infinity-80 Systems Regulation Number: 21 CFR 866.6060
amplification |
| Regulation number,
Classification name,
Product code: | 21 CFR 866.6060
The Xpert BCR-ABL Ultra test is an in vitro diagnostic test for the quantitation of BCR-ABL1 and ABL1 mRNA transcripts in peripheral blood specimens of diagnosed t(9;22) positive Chronic Myeloid Leukemia (CML) patients expressing BCR-ABLI fusion transcripts type e13a2 and/or e14a2. The test utilizes automated, quantitative, real-time reverse transcription polymerase chain reaction (RT-qPCR). The Xpert BCR-ABL Ultra test is intended to measure BCR-ABL1 to ABL1 percent ratios on the International Scale (IS), and also expressed as a log molecular reduction (MR value) from a baseline of 100% (IS), in t(9;22) positive CML patients during of treatment with Tyrosine Kinase Inhibitors (TKIs).
The test does not differentiate between e13a2/b2a2 or e14a2/b3a2 fusion transcripts and does not monitor other rare fusion transcripts resulting from t(9;22). This test is not intended for the diagnosis of CML.
The Xpert BCR-ABL Ultra test is intended for use only on the Cepheid GeneXpert® Dx System and the GeneXpert Infinity System.
The Xpert BCR-ABL Ultra test is an automated in vitro diagnostic test for quantifying the amount of BCR-ABLI (BCR-ABL, hereafter) mRNA transcript as a ratio of BCR-ABL/ABL per the International Scale (IS).
The test is performed on the Cepheid GeneXpert® Dx System and GeneXpert Infinity System (referred to as the GeneXpert systems). The GeneXpert systems require the use of single-use, disposable cartridges that hold the PCR reagents and host the PCR process. Because the cartridges are self-contained and specimens never come into contact with working parts of the instrument modules, cross-contamination between samples is minimized. The GeneXpert systems have 1 to 80 randomly accessible modules, depending upon the instrument, that are each capable of performing separate sample preparation and real-time PCR and RT-PCR tests. Each module contains a syringe drive for dispensing fluids (i.e., the syringe drive activates the plunger that works in concert with the rotary valve in the cartridge to move fluids between chambers), and a proprietary I-CORE® thermocycler for performing real-time PCR and RT-PCR and detection.
The Xpert BCR-ABL Ultra test includes reagents to detect BCR-ABL fusion genes resulting from two major breakpoints, translocation e13a2/b2a2 and e14a2/b3a2 and the ABL transcript as an endogenous control in peripheral blood specimens. The amount of BCR-ABL transcript in the patient sample is reported as a percent ratio of BCR-ABL/ABL on the International Scale (IS), and also expressed as a log molecular reduction (MR value) from a baseline of 100% (IS), using the GeneXpert software.
There are two controls included in each Xpert BCR-ABL Ultra test, which are the ABL Endogenous Control and the Probe Check Control (PCC). The ABL Endogenous Control normalizes the BCR-ABL target and ensures that sufficient sample is used in the test. The PCC verifies reagent rehydration. PCR tube filling, and that all reaction components, including probes and dyes, are present and functional in the cartridge.
Here's an analysis of the acceptance criteria and the study that proves the device meets them, based on the provided text:
Acceptance Criteria and Device Performance for Xpert® BCR-ABL Ultra
Note: The provided document is a 510(k) Summary, which typically focuses on demonstrating substantial equivalence to a predicate device rather than explicitly stating pre-defined "acceptance criteria" in a quantitative, pass/fail manner. For this analysis, I will infer relevant performance metrics from the non-clinical and clinical studies presented as evidence of substantial equivalence. The "Acceptance Criteria" column will represent the demonstrated performance that FDA found acceptable for classification, and the "Reported Device Performance" will be the specific results from the studies.
1. Table of Acceptance Criteria and Reported Device Performance
Acceptance Criteria (Inferred) | Reported Device Performance (Xpert® BCR-ABL Ultra) |
---|---|
Linearity/Dynamic Range: |
- Linear regression R² for
e13a2/b2a2
breakpoint. - Linear regression R² for
e14a2/b3a2
breakpoint. - Maximum Standard Deviation (SD) within reportable range. | -
e13a2/b2a2
: R² = 0.98304 e14a2/b3a2
: R² = 0.9788- Maximum SD = 0.26 (within reportable range of MR0.26 to MR4.52) |
| Analytical Sensitivity (LoD): - LoD for
e13a2/b2a2
breakpoint (target 95% positivity). - LoD for
e14a2/b3a2
breakpoint (target 95% positivity). - Overall LoD claimed for both breakpoints. | -
e13a2/b2a2
: 0.0030% (IS)/MR4.52 (95.74% positivity at this level) e14a2/b3a2
: 0.0029% (IS)/MR4.55 (96.04% positivity at this level)- Overall LoD: 0.0030% (IS)/MR4.52 |
| Analytical Sensitivity (LoQ): - Equivalence to LoD.
- MR Standard Deviation for
e13a2/b2a2
ande14a2/b3a2
within defined limits (e.g.,
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(233 days)
Device Name: QXDx BCR-ABL %IS Kit for use on the QXDx AutoDG ddPCR System Regulation Number: 21 CFR 866.6060
|
| Classification
Name: | Bcr/Abl1 Monitoring Test, OYX (per 21 CFR section
866.6060
The QXDx™ BCR-ABL %IS Kit is an in vitro nucleic acid amplification test for the quantitation of BCR-ABL1 and ABL1 transcripts in total RNA from whole blood of diagnosed (9;22) positive Chronic Myeloid Leukemia (CML) patients expressing BCR-ABL1 fusion transcripts type e13a2 and/or e14a2. The QXDx BCR-ABL %IS Kit is a reverse transcription-quantitative PCR performed on the Bio-Rad QXDx™ AutoDG™ ddPCR System and is intended to measure BCR-ABL1 to ABL1, expressed as a log molecular reduction (MR value) from a baseline of 100% on the International Scale, in (9;22) positive CML patients during monitoring of treatment with Tyrosine Kinase Inhibitors (TKIs).
The QXDx BCR-ABL %IS Kit is intended for use only on the Bio-Rad QXDx AutoDG ddPCR System.
The test does not differentiate between e13a2 or e14a2 fusion transcripts and does not monitor other rare fusion transcripts resulting from t(9;22). This test is not intended for the diagnosis of CML.
The QXDx AutoDG ddPCR System consists of two instruments, the QXDx Automated Droplet Generator and the QXDx Droplet Reader, and their associated consumables. The QXDx Automated Droplet Generator partitions samples into approximately 20,000 nanoliter-sized droplets and, after PCR on a thermal cycler, droplets from each sample are analyzed individually on the QXDx Droplet Reader. PCR-positive and PCR-negative droplets are counted to provide direct quantification of nucleic acid in digital form. Results are analyzed on QXDx Software running on a Windows based computer.
The QXDx AutoDG ddPCR System contains:
- QXDx Automated Droplet Generator ●
- QXDx Droplet Reader ●
- Laptop Computer with QXDx Software .
- Accessory components: ●
- o ddPCR Dx AutoDG Consumable Pack
- Automated Droplet Generation Oil for Probes ■
- DG32 Cartridges w/ Gaskets ■
- ddPCR Pipet Tips
- . ddPCR 96 Well Plates
- . ddPCR Pierceable Foil Seals
- o ddPCR Dx AutoDG Droplet Reader Oil Pack
- o ddPCR Dx AutoDG Consumable Pack
Components of the kit QXDx BCR-ABL %IS KIT:
- QXDXTM BCR-ABL primers & probes
- QXDXTM Nuclease Free Water
- QXDXTM iScript Advanced Reverse Transcriptase
- QXDXTM 5x iScript Select Reaction Mix
- QXDXTM RT Primers
- QXDXTM 2X ddPCRTM Supermix
- QXDXTM BCR-ABL ~0.1%IS
- QXDXTM BCR-ABL ~10%IS
- QXDXTM BCR-ABL Neg-CTRL
- QXDXTM BCR-ABL H-CTRL
- QXDXTM BCR-ABL L-CTRL
The provided document details the analytical and clinical performance of the QXDx BCR-ABL %IS Kit for use on the QXDx AutoDG ddPCR System. This device is an in vitro nucleic acid amplification test for the quantitation of BCR-ABL and ABL1 transcripts in total RNA from whole blood of diagnosed Chronic Myeloid Leukemia (CML) patients.
The document does not describe the acceptance criteria and study for an AI/ML powered medical device, but rather for an in vitro diagnostic (IVD) kit. Therefore, many of the typical acceptance criteria and study elements associated with AI/ML devices (e.g., human-in-the-loop performance, expert consensus for ground truth on images, MRMC studies) are not applicable.
Below is a breakdown of the acceptance criteria and study details provided for this IVD kit, adapted to the requested format where possible, and noting where specific requested information (relevant to AI/ML devices) is not available for this type of device.
Acceptance Criteria and Reported Device Performance
The core acceptance criteria are related to the analytical performance of the kit, primarily precision, reproducibility, cross-reactivity, interference, linearity, and detection capability. The performance is consistently reported in terms of Molecular Reduction (MR) value or %International Scale (%IS), which are standardized measures for BCR-ABL levels.
Table 1: Acceptance Criteria of the QXDx BCR-ABL %IS Kit and Reported Performance
Category / Study | Acceptance Criteria | Reported Device Performance |
---|---|---|
1. Precision & Reproducibility | Total CV (Reproducibility): | Total CV (Reproducibility): |
- |
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(39 days)
, OR 97219
Re: K173492
Trade/Device Name: MolecularMD MRDx BCR-ABL Test Regulation Number: 21 CFR 866.6060
|
| Product Code: | OYX |
| Regulation Number: | 866.6060
The MolecularMD MRDx BCR-ABL Test is an in vitro diagnostic test for the quantitative detection of BCR-ABL 1 transcripts (e13a2/b2a2 and/or e14a2/63a2) and the ABL1 endogenous control mRNA in peripheral blood specimens from patients previously diagnosed with t(9:22) positive chronic myeloid leukemia (CML). The ratio of BCR-ABL1 is calculated and reported on the WHO International Scale. The test utilizes quantitative, real-time reverse transcription polymerase chain reaction performed on the Applied Biosystems 7500 Fast Dx instrument.
The MolecularMD MRDx BCR-ABL Test is intended to measure BCR-ABL mRNA transcript levels in patients diagnosed with t(9;22) positive CML during monitoring of treatment with Tyrosine Kinase Inhibitors (TKIs).
The device is also intended to be used in the serial monitoring for BCR-ABL mRNA transcript levels as an aid in identifying CML patients in the chronic phase being treated with nilotinib who may be candidates for treatment discontinuation and for monitoring of treatment-free remission.
The test does not differentiate between e13a2 or e14a2 fusion transcripts and does not monitor other rare fusion franscripts resulting from t(9:22). The test is not intended for the diagnosis of CML.
The MolecularMD MRDx® BCR-ABL Test is a quantitative, real-time polymerase chain reaction test that provides quantitation of BCR-ABL1 (hereafter BCR-ABL) transcript e13a2/b2a2 or e14a2/b3a2 and ABL1 (hereafter ABL) transcript levels in RNA extracted from peripheral blood samples collected from CML patients. Peripheral blood is collected in either EDTA or PAXgene Blood RNA Tubes. Each collection tube type requires a specified RNA extraction method and RNA input amount. Total RNA is extracted from peripheral blood and serves as the template for RT-qPCR. The test is performed using a onestep RT-qPCR protocol wherein the reverse transcription and quantitative, real-time PCR reactions are performed in the same well. BCR-ABL and ABL amplicons are generated and detected in real-time using TaqMan® MGB probes. The MolecularMD MRDx BCR-ABL Test is performed on the Applied Biosystems 7500 Fast Dx Real-Time PCR Instrument. The instrument integrates a thermal cycler, a fluorometer and application specific software. The ABI 7500 Fast Dx instrument software v1.4.1 calculates the BCR-ABL and ABL copy numbers using a standard curve generated with calibrators on each individual plate. The data are exported as a CSV file for further analysis in the MRDx® BCR-ABL Test Software. The BCR-ABL/ABL ratio is calculated and converted to the International Scale by the MRDx BCR-ABL Test Software. The MRDx BCR-ABL Test Software is used to analyze all test results. This software, provided with the MRDx BCR-ABL Test, is used to calculate the BCR-ABL/ABL % IS and MR value for patient sample using the conversion factor for the MRDx BCR-ABL Test after validating each MRDx BCR-ABL Test result against the run acceptance criteria and sample acceptance criteria.
The MolecularMD MRDx BCR-ABL Test is an in vitro diagnostic test for the quantitative detection of BCR-ABL1 transcripts and ABL1 endogenous control mRNA in peripheral blood specimens from patients previously diagnosed with t(9;22) positive chronic myeloid leukemia (CML). It calculates the ratio of BCR-ABL1 to ABL1 and reports it on the WHO International Scale. The device is intended to measure BCR-ABL mRNA transcript levels in CML patients during monitoring of treatment with Tyrosine Kinase Inhibitors (TKIs). It is also intended for serial monitoring of BCR-ABL mRNA transcript levels to aid in identifying CML patients in the chronic phase being treated with nilotinib who may be candidates for treatment discontinuation and for monitoring of treatment-free remission.
Here's an overview of the acceptance criteria and study data:
1. Table of Acceptance Criteria and Reported Device Performance
The document does not explicitly present a consolidated table of acceptance criteria for all performance characteristics. However, individual acceptance criteria are mentioned within the description of each study. Below is a summary of acceptance criteria and the device's reported performance, extracted from the document:
Performance Characteristic | Acceptance Criteria | Reported Device Performance |
---|---|---|
Traceability to WHO IS | High traceability to WHO reference standards, consistent conversion factor across multiple lots. | Deming regression analyses showed a conversion factor of 1.1 for all three lots (A, B, C), demonstrating consistency. Data from all three lots showed high traceability to WHO reference standards. Slope was approximately 1.0 (0.98-1.0) and correlation was 1.0 for all lots. |
Accuracy (Correlation to ddPCR) | High concordance between MRDx BCR-ABL Test results and the reference ddPCR test results, with acceptable predicted systematic differences at clinical decision points. (Implicit: Deming regression slope close to 1, y-intercept close to 0, high Pearson coefficient). | EDTA: Deming Slope: 0.96 (95% CI [0.94, 0.99]), Deming Y-Intercept: 0.077 (95% CI [0.0027, 0.17]), Pearson Coefficient: 0.984. Predicted difference at MR3: -0.031 (95% CI [-0.053, -0.0049]), MR4.0: -0.067 (95% CI [-0.10, -0.031]), MR4.5: -0.085 (95% CI [-0.13, -0.039]). |
PAXgene: Deming Slope: 0.98 (95% CI [0.95, 1.0]), Deming Y-Intercept: -0.021 (95% CI [-0.11, 0.056]), Pearson Coefficient: 0.985. Predicted difference at MR3: -0.088 (95% CI [-0.11, -0.062]), MR4.0: -0.11 (95% CI [-0.15, -0.071]), MR4.5: -0.12 (95% CI [-0.17, -0.071]). Conclusion: High concordance observed for both tube types. | ||
Limit of Blank (LoB) | Not explicitly stated as a numerical criterion, but implies no measurable BCR-ABL values in negative samples. | Out of 180 replicates from 30 BCR-ABL negative samples, 177 had no measurable BCR-ABL values. Three (1.7%) had measurements well below the LoD and were reported as undetected. |
Limit of Detection (LoD) | Not explicitly stated as a numerical criterion, but the calculated LoD values should be acceptable for clinical use. | EDTA: Estimated LoD was 0.00029% IS (MR5.5) for both e13a2 and e14a2 transcripts. |
PAXgene: Estimated LoD was 0.00039% IS (MR5.4) for e13a2 and 0.00029% IS (MR5.5) for e14a2. The final LoD was determined to be 0.00029% IS (MR5.5) for EDTA and 0.00039% IS (MR5.4) for PAXgene. | ||
Limit of Quantitation (LoQ) | Total Error (TE) ≤ 0.5 log10. LoQ to be set at or below a clinically relevant threshold (e.g., MR4.5 for reporting). | EDTA: LoQ was 0.0016% IS (MR4.8). |
PAXgene: LoQ was 0.0025% IS (MR4.6). The MRDx BCR-ABL Test Software limits the reported LoQ and quantitated results to 0.0032% IS (MR4.5) for both blood tube types. | ||
Analytical Specificity (Interfering Substances) | No clinically significant difference in results when compared to matrix control samples. | Endogenous: Largest difference between endogenous substance spike and matrix control for PAXgene was -0.080 log10 (95% CI: -0.32 to 0.16) at MR4.5. For EDTA, it was 0.060 log10 (95% CI: -0.042 to 0.16) at MR4.5. No clinically significant difference observed. |
Exogenous: Largest difference between exogenous substance spike and matrix control for PAXgene was 0.040 log10 (95% CI: -0.010 to 0.090) at MR3.0. For EDTA, it was 0.010 log10 (95% CI: -0.022 to 0.22) at MR4.5. No clinically significant difference observed. Conclusion: None of the potential interferents had significant interference. | ||
Analytical Specificity (Primer Specificity) | Primers and probes amplify intended targets, no cross-reactivity with ABL2 IVT RNA. Cross-reactivity with e19a2 BCR-ABL is expected but mitigated by labeling. | Sequencing results of PCR products for BCR-ABL and ABL matched Genbank sequences, demonstrating amplification of intended targets. No cross-reactivity with ABL2 IVT RNA observed. Cross-reactivity with e19a2 BCR-ABL transcript was observed as expected, and addressed in labeling with a precaution statement. |
Analytical Specificity (Specimen Cross Contamination) | No negative samples (0% IS) should have a BCR-ABL/ABL % IS value detectable above the LoD of the assay when juxtaposed with high positive samples. | No negative samples for either extraction method had a detectable BCR-ABL/ABL % IS value above the LoD. Conclusion: No significant carryover between wells. |
Precision (Repeatability) | SD log10 ≤ 0.25. | PAXgene: Highest SD was 0.10 for e14a2 MR4.5. All levels for both transcripts passed (SD ≤ 0.25 log10). |
EDTA: Highest SD was 0.087 for e14a2 MR4.5. All levels for both transcripts passed (SD ≤ 0.25 log10). | ||
Precision (Reproducibility) | Total %CV for MR values should be within acceptable limits (typically 0.05) or acceptable Degree of Nonlinearity). Assay should be linear across the reportable range. | EDTA: e13a2 linear from MR0.93 to MR5.1 (max SD 0.22), e14a2 linear from MR0.99 to MR5.0 (max SD 0.26). |
PAXgene: e13a2 linear from MR0.78 to MR4.8 (max SD 0.13), e14a2 linear from MR0.93 to MR4.9 (max SD 0.31). Conclusion: The assay is linear across the reportable range of MR1.0 to MR4.5 for both tube types. | ||
Kit Stability (Real-time & Freeze-Thaw) | Stability for a specified shelf life and open-vial stability (freeze-thaw cycles and time after initial use). Acceptable performance of calibration curve, control results, and WHO secondary standards. | Passing test results data for at least 16 months for 3 lots stored at two temperatures. Shelf life of 15 months at -30 to -15°C and -80 to -65°C. Open-vial stability of 3 freeze-thaw cycles and up to 2 months following initial use. |
Reagent Stability (In Use) | Mean of test samples ± 0.5 MR of the control. Differences between standard and extreme conditions |
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(185 days)
Regulation section:
- 21 CFR 866.6060
-
- Classification:
Class II (Special Controls)
information provided in this de novo submission to classify this device into class II under regulation 21 CFR 866.6060
BCR-ABL Quantitation Test |
| Class: | II (special controls) |
| Regulation: | 21 CFR 866.6060
The QuantideX qPCR BCR-ABL IS Kit is an in vitro nucleic acid amplification test for the quantitation of BCR-ABL1 and ABL1 transcripts in total RNA from whole blood of diagnosed t(9,22) positive Chronic Myeloid Leukemia (CML) patients expressing BCR-ABL1 fusion transcripts type e13a2 and/or e14a2. The QuantideX qPCR BCR-ABL IS Kit is a reverse transcription-quantitative PCR performed on the Applied Biosystems 7500 Fast Dx Real-Time PCR Instrument and is intended to measure BCR-ABL1 to ABL1, expressed as a log molecular reduction (MR value) from a baseline of 100% on the International Scale, in t(9;22) positive CML patients during monitoring of treatment with Tyrosine Kinase Inhibitors (TKIs).
The test does not differentiate between e13a2 or e14a2 fusion transcripts and does not monitor other rare fusion transcripts resulting from t(9:22). This test is not intended for the diagnosis of CML.
The QuantideX qPCR BCR-ABL IS Kit reagents are adapted for use on the ABI 7500 Fast Dx Real-Time PCR Instrument. The assay includes reagents sufficient for 60 reactions. A description of the reagents provided is described below in Table 1.
Here's a summary of the acceptance criteria and study that proves the device meets them, based on the provided text:
1. Table of Acceptance Criteria and Reported Device Performance
The document describes both analytical and clinical performance acceptance criteria.
Analytical Performance - Precision/Reproducibility
Performance Metric | Acceptance Criteria (SD) | Reported Device Performance (Max Total SD) | Met? |
---|---|---|---|
Within-lab Precision | |||
MR Value 4.25 | ≤ 0.36 | 0.134 (at MR 4) | Yes |
Site-to-Site Reproducibility | |||
MR Value 4.25 | ≤ 0.36 | 0.167 (at MR 4) | Yes |
Analytical Performance - Linearity
Performance Metric | Acceptance Criteria (Slope/Intercept for Regression) | Reported Device Performance (Slope/Intercept/Max SD) | Met? |
---|---|---|---|
Linear Regression | Slope close to 1 (not explicitly defined but implied typical regression expectations), intercept close to 0 (implied) | e13a2: Slope 1.01, Intercept -0.11, Max SD 0.17 | |
e14a2: Slope 1.01, Intercept -0.05, Max SD 0.17 | Yes | ||
Range of Linearity | (Implied based on clinical use range) | MR 0.3 (50% IS) to MR 4.7 (0.002% IS) for both transcripts | Yes |
Analytical Performance - Limit of Quantitation (LoQ)
Performance Metric | Acceptance Criteria (SD) | Reported Device Performance (MR Range/SD Range) | Met? |
---|---|---|---|
LoQ | ≤ 0.36 at MR 4.5 or greater | MR values 4.6 to 4.87, SD values 0.23 to 0.34 | Yes |
Analytical Performance - Interfering Substances
Performance Metric | Acceptance Criteria (Mean difference from control) | Reported Device Performance | Met? |
---|---|---|---|
Interference | Mean of test samples ± 0.5 MR of the control | All met acceptance criteria | Yes |
Analytical Performance - Primer Specificity
Performance Metric | Acceptance Criteria | Reported Device Performance | Met? |
---|---|---|---|
Specificity | Specimens without a major BCR-ABL1 breakpoint reported as negative or below LoD in > 8/9 replicates | Met acceptance criteria (e.g., cell lines and IVT controls without e13a2/e14a2 were 95% of CML-negative samples tested negative or below LoD | All negative specimens (25/25) reported as "Negative (sufficient ABL1)" |
Analytical Performance - RNA Input
Performance Metric | Acceptance Criteria (SD criteria from Table 3) | Reported Device Performance (RNA input range with met criteria) | Met? |
---|---|---|---|
RNA Input Range | Same as Table 3 for corresponding MR values | 750 to 6000 ng from MR 1 to MR 4.5 | Yes |
Analytical Performance - Traceability
Performance Metric | Acceptance Criteria (Regression to WHO panel) | Reported Device Performance (Slope/Intercepts for 3 lots) | Met? |
---|---|---|---|
Traceability | Slope 1.0 to 1.1, Intercept 0.02 - 0.11 | Lot1: y=-0.11+1.1x; Lot2: y=0.02+1x; Lot3: y=-0.059+1.1x | Yes |
Analytical Performance - Specimen Stability (Whole Blood)
Performance Metric | Acceptance Criteria (MR unit difference from baseline) | Reported Device Performance (Duration and storage conditions) | Met? |
---|---|---|---|
Whole Blood Stability | All results within 0.5 MR units from baseline | Up to 72 hours at 2-8°C | Yes |
Clinical Performance
Performance Metric | Acceptance Criteria | Reported Device Performance | Met? |
---|---|---|---|
Event-Free Survival (EFS) Difference at 36 months | Statistically significantly different AND point estimates differing by at least 10 percentage points (for MR 0 | Met | Yes |
2. Sample Size Used for the Test Set and Data Provenance
The primary test set for clinical performance involved a retrospective study with:
- Sample Size: 137 evaluable samples from 96 subjects (out of 139 samples from 98 patients initially collected).
- Data Provenance: Retrospective, collected at 2 clinical sites in the US (OHSU and Hospital of the University of Pennsylvania).
For analytical performance studies, various sample compositions and quantities were used:
- Precision (within-lab & site-to-site): 25 samples formulated from 5 human RNA specimens positive for BCR-ABL1 diluted into RNAs from CML-negative blood. The site-to-site reproducibility study involved 1200 measurements from this 25-sample pool.
- Linearity/Reportable Range: 2 separate RNA specimens (one e13a2, one e14a2) diluted into RNAs from CML-negative whole blood (ranging from MR 0.1 to MR 4.8).
- Limit of Blank (LoB): 30 non-leukemic human RNA specimens.
- Limit of Detection (LoD): 4 separate human RNA specimens positive for BCR-ABL1, serially diluted to 28 levels.
- Limit of Quantitation (LoQ): 6 specimens derived from 6 human RNA positive for BCR-ABL (diluted to target MR 4.7).
- Interfering Substances: Residual CML-positive blood diluted to approximately MR 4.0 into RNA from CML-negative whole blood (tested in 9 replicates).
- Primer Specificity: 11 leukemic specimens (CML, AML, ALL) and 2 non-leukemic RNA specimens.
- Specimen Carryover Contamination: Serially diluted total RNA from residual clinical CML-positive blood into RNA from CML-negative whole blood in a checkerboard pattern (25 high positive, 25 negative).
- RNA Isolation: CML-positive white blood cells serially diluted across 4 levels (MR 1-4) into CML-negative human anti-coagulated whole blood.
- RNA Input: 30 samples derived from 2 primary RNA samples diluted into non-leukemic human RNA (total 216 evaluable observations).
- Traceability: WHO Reference Panel (4 panel members tested in duplicate).
- Reagent Stability: 5 samples diluted to approximately MR 1, 2, 3, 4, and
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