(266 days)
BD Enteric Bacterial Panel for BD COR™ System
BD Enteric Bacterial Panel for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens. BD Enteric Bacterial Panel for BD COR™ System detects nucleic acids from:
- Salmonella spp.
- Campylobacter spp. (C. jejuni and C. coli)
- Shigella spp. / Enteroinvasive Escherichia coli (EIEC)
- Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.
Testing is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic sequence-specific hybridization probes for detection of the amplified DNA.
This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, and Shiga toxin-producing E. coli (STEC). Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease.
BD Enteric Bacterial Panel plus for BD COR™ System
BD Enteric Bacterial Panel plus for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens. BD Enteric Bacterial Panel plus for BD COR™ System detects nucleic acids from:
- Salmonella spp.
- Campylobacter spp. (C. jejuni and C. coli)
- Shigella spp. / Enteroinvasive Escherichia coli (EIEC)
- Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.
- Plesiomonas shigelloides
- Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae)
- Enterotoxigenic Escherichia coli (ETEC) heat-labile enterotoxin (LT) / heat-stable enterotoxin (ST) genes
- Yersinia enterocolitica
Testing is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic sequence-specific hybridization probes for detection of the amplified DNA.
This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, Shiga toxin-producing E. coli (STEC), Plesiomonas shigelloides, Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae), Enterotoxigenic Escherichia coli (ETEC) LT/ST, and Yersinia enterocolitica. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease.
Enteric Bacterial Panel Diluent for BD COR™ System
The Enteric Bacterial Panel Diluent for BD COR™ System is intended to be used in clinical settings according to instructions provided for aliquoting into Molecular Aliquot Tubes by the BD COR™ System. The Enteric Bacterial Panel Diluent for BD COR™ System is only for use with BD Fecal Collection and Transport Kit specimens tested on BD COR™ Systems.
The BD Enteric Bacterial Panel for BD COR™ System (BD EBP for BD COR™ System) simultaneously detects pathogens responsible for gastroenteritis due to Salmonella spp., Campylobacter spp. (C. jejuni and C. coli), Shigella spp./EIEC, stx/stx1/stx2 found in Shiga toxin-producing E. coli and in Shigella dysenteriae, and an internal Sample Processing Control. The BD Enteric Bacterial Panel plus for BD COR™ Systems (BD EBP plus for BD COR™ System) additionally detects Plesiomonas shigelloides, Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae), Enterotoxigenic E. coli (ETEC) LT/ST, Yersinia enterocolitica and an internal Sample Processing Control with a second master mix. The assays automate the testing process and minimize operator intervention from the time the sample is placed onto the BD COR™ System until results are available.
The BD COR™ System is comprised of a single BD COR™ PX System attached to a BD COR™ MX Analyzer as described in K210585 and K224653. Once the specimens are loaded, the BD COR™ PX System performs the necessary pre-analytical steps such as vortexing, aliquoting into a diluent filled molecular aliquot tube, sorting/grouping of the secondary samples for testing by assay, pre-warming and cooling of the sample (where required), and transport of the sample into the BD COR™ MX Analyzer, where extraction, amplification and detection take place.
Additionally, the steps of ordering tests on the instrument for specific samples will be managed directly by the user interaction with the Laboratory Information System (LIS), which communicates directly with the instrument.
Once the clinical specimens are received in the laboratory and loaded into the transport racks, the user will not be required to directly handle the specimen again prior to result reporting and removal from the system.
N/A
FDA 510(k) Clearance Letter - BD Enteric Bacterial Panel for BD COR System
Page 1
October 31, 2025
Becton, Dickinson and Company
Joseph Basore
Senior Staff Regulatory Specialist
7 Loveton Circle
Sparks, Maryland 21152
Re: K250358
Trade/Device Name: BD Enteric Bacterial Panel for BD COR System, BD Enteric Bacterial Panel plus for BD COR System, and Enteric Bacterial Panel Diluent for BD COR System
Regulation Number: 21 CFR 866.3990
Regulation Name: Gastrointestinal Microorganism Multiplex Nucleic Acid-Based Assay
Regulatory Class: Class II
Product Code: PCI
Dated: February 7, 2025
Received: February 7, 2025
Dear Joseph Basore:
We have reviewed your section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (the Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. Although this letter refers to your product as a device, please be aware that some cleared products may instead be combination products. The 510(k) Premarket Notification Database available at https://www.accessdata.fda.gov/scripts/cdrh/cfdocs/cfpmn/pmn.cfm identifies combination product submissions. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration. Please note: CDRH does not evaluate information related to contract liability warranties. We remind you, however, that device labeling must be truthful and not misleading.
If your device is classified (see above) into either class II (Special Controls) or class III (PMA), it may be subject to additional controls. Existing major regulations affecting your device can be found in the Code of Federal Regulations, Title 21, Parts 800 to 898. In addition, FDA may publish further announcements concerning your device in the Federal Register.
Page 2
K250358 - Joseph Basore Page 2
Additional information about changes that may require a new premarket notification are provided in the FDA guidance documents entitled "Deciding When to Submit a 510(k) for a Change to an Existing Device" (https://www.fda.gov/media/99812/download) and "Deciding When to Submit a 510(k) for a Software Change to an Existing Device" (https://www.fda.gov/media/99785/download).
Your device is also subject to, among other requirements, the Quality System (QS) regulation (21 CFR Part 820), which includes, but is not limited to, 21 CFR 820.30, Design controls; 21 CFR 820.90, Nonconforming product; and 21 CFR 820.100, Corrective and preventive action. Please note that regardless of whether a change requires premarket review, the QS regulation requires device manufacturers to review and approve changes to device design and production (21 CFR 820.30 and 21 CFR 820.70) and document changes and approvals in the device master record (21 CFR 820.181).
Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Part 801 and Part 809); medical device reporting (reporting of medical device-related adverse events) (21 CFR Part 803) for devices or postmarketing safety reporting (21 CFR Part 4, Subpart B) for combination products (see https://www.fda.gov/combination-products/guidance-regulatory-information/postmarketing-safety-reporting-combination-products); good manufacturing practice requirements as set forth in the quality systems (QS) regulation (21 CFR Part 820) for devices or current good manufacturing practices (21 CFR Part 4, Subpart A) for combination products; and, if applicable, the electronic product radiation control provisions (Sections 531-542 of the Act); 21 CFR Parts 1000-1050.
All medical devices, including Class I and unclassified devices and combination product device constituent parts are required to be in compliance with the final Unique Device Identification System rule ("UDI Rule"). The UDI Rule requires, among other things, that a device bear a unique device identifier (UDI) on its label and package (21 CFR 801.20(a)) unless an exception or alternative applies (21 CFR 801.20(b)) and that the dates on the device label be formatted in accordance with 21 CFR 801.18. The UDI Rule (21 CFR 830.300(a) and 830.320(b)) also requires that certain information be submitted to the Global Unique Device Identification Database (GUDID) (21 CFR Part 830 Subpart E). For additional information on these requirements, please see the UDI System webpage at https://www.fda.gov/medical-devices/device-advice-comprehensive-regulatory-assistance/unique-device-identification-system-udi-system.
Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21 CFR 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to https://www.fda.gov/medical-devices/medical-device-safety/medical-device-reporting-mdr-how-report-medical-device-problems.
For comprehensive regulatory information about medical devices and radiation-emitting products, including information about labeling regulations, please see Device Advice (https://www.fda.gov/medical-devices/device-advice-comprehensive-regulatory-assistance) and CDRH Learn (https://www.fda.gov/training-and-continuing-education/cdrh-learn). Additionally, you may contact the Division of Industry and Consumer Education (DICE) to ask a question about a specific regulatory topic. See the DICE website (https://www.fda.gov/medical-devices/device-advice-comprehensive-regulatory-
Page 3
K250358 - Joseph Basore Page 3
assistance/contact-us-division-industry-and-consumer-education-dice) for more information or contact DICE by email (DICE@fda.hhs.gov) or phone (1-800-638-2041 or 301-796-7100).
Sincerely,
Bryan M. Grabias -S
2025.10.31 12:11:41
-04'00'
Bryan Grabias, Ph.D.
Acting Branch Chief
Bacterial Respiratory and Medical Countermeasures Branch
Division of Microbiology Devices
OHT7: Office of In Vitro Diagnostics
Office of Product Evaluation and Quality
Center for Devices and Radiological Health
Enclosure
Page 4
FORM FDA 3881 (6/20) Page 1 of 2
DEPARTMENT OF HEALTH AND HUMAN SERVICES
Food and Drug Administration
Indications for Use
Form Approved: OMB No. 0910-0120
Expiration Date: 06/30/2023
See PRA Statement below.
510(k) Number (if known): K250358
Device Name: BD Enteric Bacterial Panel for BD COR™ System, BD Enteric Bacterial Panel plus for BD COR™ System, and Enteric Bacterial Panel Diluent for BD COR™ System
Indications for Use (Describe)
BD Enteric Bacterial Panel for BD COR™ System
BD Enteric Bacterial Panel for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens. BD Enteric Bacterial Panel for BD COR™ System detects nucleic acids from:
- Salmonella spp.
- Campylobacter spp. (C. jejuni and C. coli)
- Shigella spp. / Enteroinvasive Escherichia coli (EIEC)
- Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.
Testing is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic sequence-specific hybridization probes for detection of the amplified DNA.
This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, and Shiga toxin-producing E. coli (STEC). Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease.
BD Enteric Bacterial Panel plus for BD COR™ System
BD Enteric Bacterial Panel plus for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens. BD Enteric Bacterial Panel plus for BD COR™ System detects nucleic acids from:
- Salmonella spp.
- Campylobacter spp. (C. jejuni and C. coli)
- Shigella spp. / Enteroinvasive Escherichia coli (EIEC)
- Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as
Page 5
FORM FDA 3881 (6/20) Page 2 of 2
Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.
- Plesiomonas shigelloides
- Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae)
- Enterotoxigenic Escherichia coli (ETEC) heat-labile enterotoxin (LT) / heat-stable enterotoxin (ST) genes
- Yersinia enterocolitica
Testing is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic sequence-specific hybridization probes for detection of the amplified DNA.
This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, Shiga toxin-producing E. coli (STEC), Plesiomonas shigelloides, Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae), Enterotoxigenic Escherichia coli (ETEC) LT/ST, and Yersinia enterocolitica. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease.
Enteric Bacterial Panel Diluent for BD COR™ System
The Enteric Bacterial Panel Diluent for BD COR™ System is intended to be used in clinical settings according to instructions provided for aliquoting into Molecular Aliquot Tubes by the BD COR™ System. The Enteric Bacterial Panel Diluent for BD COR™ System is only for use with BD Fecal Collection and Transport Kit specimens tested on BD COR™ Systems.
Type of Use (Select one or both, as applicable)
☒ Prescription Use (Part 21 CFR 801 Subpart D)
☐ Over-The-Counter Use (21 CFR 801 Subpart C)
CONTINUE ON A SEPARATE PAGE IF NEEDED.
This section applies only to requirements of the Paperwork Reduction Act of 1995.
DO NOT SEND YOUR COMPLETED FORM TO THE PRA STAFF EMAIL ADDRESS BELOW.
The burden time for this collection of information is estimated to average 79 hours per response, including the time to review instructions, search existing data sources, gather and maintain the data needed and complete and review the collection of information. Send comments regarding this burden estimate or any other aspect of this information collection, including suggestions for reducing this burden, to:
Department of Health and Human Services
Food and Drug Administration
Office of Chief Information Officer
Paperwork Reduction Act (PRA) Staff
PRAStaff@fda.hhs.gov
"An agency may not conduct or sponsor, and a person is not required to respond to, a collection of information unless it displays a currently valid OMB number."
Page 6
510(k) Summary
BD Enteric Bacterial Panel for BD COR™ System and BD Enteric Bacterial Panel plus for BD COR™ System
Summary Preparation Date: 10/1/2025
Submitted by:
BD Integrated Diagnostic Solutions
Becton, Dickinson and Company
7 Loveton Circle
Sparks, MD 21152
Contact:
Joseph Basore, Ph.D., RAC
Senior Staff Regulatory Affairs Specialist
Tel: 616-301-4068
Email: Joseph.Basore@bd.com
Proprietary Names:
For the instrument: BD COR™ System
For the assay: BD Enteric Bacterial Panel for BD COR™ System and BD Enteric Bacterial Panel plus for BD COR™ System
Common Names:
For the instrument: High-throughput molecular system
For the assay: Gastrointestinal Bacterial Panel Multiplex Nucleic Acid-Based Assay
Enteric Bacterial Panel
Enteric Bacterial Nucleic Acid Test
Enteric Bacterial identification and differentiation system
Enteric assay
Enteric Test
BD EBP plus for BD COR™ System
BD EBP for BD COR™ System
Page 7
Regulatory Information
Regulation section: 21 CFR 866.3990 – Gastrointestinal Bacterial Panel Multiplex Nucleic Acid-Based Assay System
Classification: Class II (Special Controls)
Panel: Microbiology (83)
Product Code(s):
- PCI: Gastrointestinal Bacterial Panel Multiplex Nucleic Acid-Based Assay System
- PCH: Gastrointestinal Pathogen Panel Multiplex Nucleic Acid-Based Assay System
- OOI: Real Time Nucleic Acid Amplification System
Performance Standards
Class II Special Controls Guideline: Gastrointestinal Microorganism Multiplex Nucleic Acid-Based Assays for Detection and Identification of Microorganisms and Toxin Genes from Human Stool Specimens, November 2, 2015.
Predicate Device
BD MAX™ Enteric Bacterial Panel (K170308, K214122) and BD MAX™ Extended Enteric Bacterial Panel (K170308, K214122)
Device Establishment
Registration Number: 1119779
Intended Use
BD Enteric Bacterial Panel for BD COR™ System
BD Enteric Bacterial Panel for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens. BD Enteric Bacterial Panel for BD COR™ System detects nucleic acids from:
- Salmonella spp.
- Campylobacter spp. (C. jejuni and C. coli)
- Shigella spp. / Enteroinvasive Escherichia coli (EIEC)
Page 8
- Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.
Testing is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic sequence-specific hybridization probes for detection of the amplified DNA.
This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, and Shiga toxin-producing E. coli (STEC). Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease.
BD Enteric Bacterial Panel plus for BD COR™ System
BD Enteric Bacterial Panel plus for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens.
BD Enteric Bacterial Panel plus for BD COR™ System detects nucleic acids from:
- Salmonella spp.
- Campylobacter spp. (C. jejuni and C. coli)
- Shigella spp. / Enteroinvasive Escherichia coli (EIEC)
- Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.
- Plesiomonas shigelloides
- Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae)
Page 9
- Enterotoxigenic Escherichia coli (ETEC) heat-labile enterotoxin (LT) / heat-stable enterotoxin (ST) genes
- Yersinia enterocolitica
Testing is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic sequence-specific hybridization probes for detection of the amplified DNA.
This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, and Shiga toxin-producing E. coli (STEC). Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease.
BD Enteric Bacterial Panel plus for BD COR™ System
BD Enteric Bacterial Panel plus for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens.
BD Enteric Bacterial Panel plus for BD COR™ System detects nucleic acids from:
- Salmonella spp.
- Campylobacter spp. (C. jejuni and C. coli)
- Shigella spp. / Enteroinvasive Escherichia coli (EIEC)
- Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.
- Plesiomonas shigelloides
- Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae)
Page 10
- Enterotoxigenic Escherichia coli (ETEC) heat-labile enterotoxin (LT) / heat-stable enterotoxin (ST) genes
- Yersinia enterocolitica
Testing is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic sequence-specific hybridization probes for detection of the amplified DNA.
This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, Shiga toxin-producing E. coli (STEC), Plesiomonas shigelloides, Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae), Enterotoxigenic Escherichia coli (ETEC) LT/ST and Yersinia enterocolitica infections. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease.
Special Conditions for Use Statement: For Prescription Use Only
Special Instrument Requirements: BD COR™ System
Device Description
The BD Enteric Bacterial Panel for BD COR™ System (BD EBP for BD COR™ System) simultaneously detects pathogens responsible for gastroenteritis due to Salmonella spp., Campylobacter spp. (C. jejuni and C. coli), Shigella spp./EIEC, stx/stx1/stx2 found in Shiga toxin-producing E. coli and in Shigella dysenteriae, and an internal Sample Processing Control. The BD Enteric Bacterial Panel plus for BD COR™ Systems (BD EBP plus for BD COR™ System) additionally detects Plesiomonas shigelloides, Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae), Enterotoxigenic E. coli (ETEC) LT/ST, Yersinia
Page 11
enterocolitica and an internal Sample Processing Control with a second master mix. The assays automate the testing process and minimize operator intervention from the time the sample is placed onto the BD COR™ System until results are available.
The BD COR™ System is comprised of a single BD COR™ PX System attached to a BD COR™ MX Analyzer as described in K210585 and K224653. Once the specimens are loaded, the BD COR™ PX System performs the necessary pre-analytical steps such as vortexing, aliquoting into a diluent filled molecular aliquot tube, sorting/grouping of the secondary samples for testing by assay, pre-warming and cooling of the sample (where required), and transport of the sample into the BD COR™ MX Analyzer, where extraction, amplification and detection take place.
Additionally, the steps of ordering tests on the instrument for specific samples will be managed directly by the user interaction with the Laboratory Information System (LIS), which communicates directly with the instrument.
Once the clinical specimens are received in the laboratory and loaded into the transport racks, the user will not be required to directly handle the specimen again prior to result reporting and removal from the system.
Test Principle
The BD EBP for BD COR™ System and BD EBP plus for BD COR™ System are designed for use with the BD Fecal Collection and Transport Kit for unpreserved soft to diarrheal stool specimens. Specimens are collected and transported to the testing laboratory using the BD Fecal Collection and Transport Kit under conditions of time and temperature that have been determined to maintain the integrity of the target nucleic acids.
The BD COR™ MX Analyzer, when combined with the BD COR™ PX System, is to be used for automated sample preparation, extraction and purification of nucleic acids from the BD Fecal Collection and Transport Kit, as well as the automated amplification and detection of target nucleic acid sequences by fluorescence-based real-time PCR for simultaneous and differential detection of Enteric Bacteria pathogens.
The BD EBP for BD COR™ System and BD EBP plus for BD COR™ System extraction reagents are dried in 96-well microtiter plates that contain binding magnetic affinity beads and Sample Processing Control (SPC). Each tube is capable of binding and eluting sample nucleic acids. The SPC monitors the integrity of the reagents, and the process steps involved in DNA extraction, amplification and detection, as well as for the presence of potential assay inhibitors.
The BD EBP for BD COR™ System and BD EBP plus for BD COR™ System liquid reagent plate includes Wash, Rehydration, Elution and Neutralization buffers. The beads (described
Page 12
above), together with the bound nucleic acids, are washed and the nucleic acids are eluted by a combination of heat and pH. When performed on BD COR™ MX, there is an additional buffer to rehydrate the dried extraction mix. Eluted DNA is neutralized and transferred to the Amplification reagent (described below) to rehydrate the PCR reagents.
The BD EBP for BD COR™ System contains one master mix that contains the dried PCR reagents for the detection and differentiation of Salmonella, Shigella/EIEC, Campylobacter, and Shiga toxin-producing E. coli (STEC) while the BD EBP plus for BD COR™ System has two distinct master mixes. The first BD EBP plus for BD COR™ System master contains the same PCR reagents as the BD COR™ EBP master mix. The second BD EBP plus for BD COR™ System master mix well contains the dried PCR reagents for the detection and differentiation for Plesiomonas shigelloides, Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae), Enterotoxigenic E. coli (ETEC) LT/ST, and Yersinia enterocolitica. After reconstitution, the BD COR™ System dispenses a fixed volume of PCR-ready solution containing extracted nucleic acids into the BD PCR Cartridge. Microvalves in the BD PCR Cartridge are sealed by the system prior to initiating PCR in order to contain the amplification mixture and thus prevent evaporation and contamination.
The amplified DNA targets are detected using hydrolysis (TaqMan®) probes, labeled at one end with a fluorescent reporter dye (fluorophore), and at the other end, with a quencher moiety. Probes labeled with different fluorophores are used to detect the target analytes in different optical channels of the BD COR™ System. When the probes are in their native state, the fluorescence of the fluorophore is quenched due to its proximity to the quencher. However, in the presence of target DNA, the probes hybridize to their complementary sequences and are hydrolyzed by the 5'-3' exonuclease activity of the DNA polymerase as it synthesizes the nascent strand along the DNA template. As a result, the fluorophores are separated from the quencher molecules and fluorescence is emitted. The BD COR™ System monitors these signals at each cycle of the PCR and interprets the data at the end of the reaction to provide qualitative test results for each analyte (i.e., positive or negative).
Substantial Equivalence¹
Table 1 provides the similarities and differences between the submitted device and the legally marketed predicate device.
¹ The term "substantial equivalence" as used in this 510(k) notification is limited to the definition of substantial equivalence as found in the Federal Food, Drug and Cosmetic Act, as amended and as applied under 21 CFR 807, Subpart E under which a device can be marketed without pre-market approval or reclassification. A determination of substantial equivalency under this notification is not intended to have any bearing whatsoever on the resolution of patent infringement suits or any other patent matters. No statements related to, or in support of substantial equivalence herein shall be construed as an admission against interest under the US Patent Laws or their application by the courts.
Page 13
Table 1: Comparison to Predicate Device
| Item | Predicate: BD MAX EBP (K140111, K214122) | Proposed: BD Enteric Bacterial Panel for BD COR™ System | Predicate: BD MAX xEBP (K170308, K214122) | Proposed BD Enteric Bacterial Panel plus for BD COR™ System |
|---|---|---|---|---|
| Intended Use/Indications for Use Statement | The BD MAX™ Enteric Bacterial Panel performed on the BD MAX™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens.The BD MAX™ Enteric Bacterial Panel detects nucleic acids from:• Salmonella spp.• Campylobacter spp. (C. jejuni and C. coli)• Shigella spp. / Enteroinvasive Escherichia coli (EIEC)• Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.Testing is performed on unpreserved soft to diarrheal stool specimens or Cary-Blair-preserved stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis. The test is performed directly on the specimen, utilizing real-time polymerase chain reaction (PCR) for the amplification of SpaO, a Campylobacter specific tuf gene sequence, ipaH and stx1/stx2. The test utilizes fluorogenic sequence- | BD Enteric Bacterial Panel for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens.The BD COR™ Enteric Bacterial Panel detects nucleic acids from:• Salmonella spp.• Campylobacter spp. (C. jejuni and C. coli)• Shigella spp. / Enteroinvasive Escherichia coli (EIEC)• Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.Testing is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic sequence-specific | The BD MAX™ Extended Enteric Bacterial Panel performed on the BD MAX™ System, is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens. It is used in conjunction with the BD MAX™ Enteric Bacterial Panel as an optional Master Mix.The BD MAX™ Extended Enteric Bacterial Panel detects nucleic acids from:• Plesiomonas shigelloides• Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae)• Enterotoxigenic Escherichia coli (ETEC) heat-labile enterotoxin (LT) / heat-stable enterotoxin (ST) genes• Yersinia enterocoliticaTesting is performed on unpreserved soft to diarrheal or Cary-Blair-preserved stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis. The test is performed directly on the specimen, utilizing real-time polymerase chain reaction (PCR) for the amplification of relevant gene target DNA. The test utilizes fluorogenic gene-specific hybridization probes for the detection of the amplified DNA. | BD Enteric Bacterial Panel plus for BD COR™ System is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric bacterial pathogens.BD Enteric Bacterial Panel plus for BD COR™ System detects nucleic acids from:• Salmonella spp.• Campylobacter spp. (C. jejuni and C. coli)• Shigella spp. / Enteroinvasive Escherichia coli (EIEC)• Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing Escherichia coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC.• Plesiomonas shigelloides• Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae)• Enterotoxigenic Escherichia coli (ETEC) heat-labile enterotoxin (LT) / heat-stable enterotoxin (ST) genes• Yersinia enterocoliticaTesting is performed utilizing the BD Fecal Collection and Transport Kit. Unpreserved soft to diarrheal stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis are probed using the flocked swab and material is transferred to the BD Fecal Collection and Transport tube containing modified Cary-Blair medium. The test is performed utilizing real-time polymerase chain reaction (PCR) for the amplification of specific sequences of target DNA. The test utilizes fluorogenic |
Page 14
| Item | Predicate: BD MAX EBP (K140111, K214122) | Proposed: BD Enteric Bacterial Panel for BD COR™ System | Predicate: BD MAX xEBP (K170308, K214122) | Proposed BD Enteric Bacterial Panel plus for BD COR™ System |
|---|---|---|---|---|
| specific hybridization probes for detection of the amplified DNA.This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter and Shiga toxin-producing E. coli (STEC) infections. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease. | hybridization probes for detection of the amplified DNA.This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, and Shiga toxin-producing E. coli (STEC). Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease | This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Plesiomonas shigelloides, Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae) Enterotoxigenic Escherichia coli (ETEC) LT/ST and Yersinia enterocolitica infections. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease. | sequence-specific hybridization probes for detection of the amplified DNA.This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, Shiga toxin-producing E. coli (STEC), Plesiomonas shigelloides, Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae), Enterotoxigenic Escherichia coli (ETEC) LT/ST and Yersinia enterocolitica infections. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test, and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease. | |
| Specimen Type | Unpreserved stool (10 µL transfer loop), Cary-Blair preserved stool (10 µL transfer loop), FecalSwab Cary-Blair (50 µL pipetted aliquot) FCT Cary-Blair (200µL pipetted aliquot) | FCT Cary-Blair (200µL pipetted aliquot) | Unpreserved stool (10 µL transfer loop), Cary-Blair preserved stool (10 µL transfer loop), FecalSwab Cary-Blair (50 µL pipetted aliquot) FCT Cary-Blair (200µL pipetted aliquot) | FCT Cary-Blair (200µL pipetted aliquot) |
| Assay Format | PCR | Same | Same | Same |
Page 15
| Item | Predicate: BD MAX EBP (K140111, K214122) | Proposed: BD Enteric Bacterial Panel for BD COR™ System | Predicate: BD MAX xEBP (K170308, K214122) | Proposed BD Enteric Bacterial Panel plus for BD COR™ System |
|---|---|---|---|---|
| specific hybridization probes for detection of the amplified DNA.This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter and Shiga toxin-producing E. coli (STEC) infections. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease. | hybridization probes for detection of the amplified DNA.This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, and Shiga toxin-producing E. coli (STEC). Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease | This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Plesiomonas shigelloides, Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae) Enterotoxigenic Escherichia coli (ETEC) LT/ST and Yersinia enterocolitica infections. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease. | sequence-specific hybridization probes for detection of the amplified DNA.This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Salmonella, Shigella/EIEC, Campylobacter, Shiga toxin-producing E. coli (STEC), Plesiomonas shigelloides, Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae), Enterotoxigenic Escherichia coli (ETEC) LT/ST and Yersinia enterocolitica infections. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test, and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn's disease. | |
| Specimen Type | Unpreserved stool (10 µL transfer loop), Cary-Blair preserved stool (10 µL transfer loop), FecalSwab Cary-Blair (50 µL pipetted aliquot) FCT Cary-Blair (200µL pipetted aliquot) | FCT Cary-Blair (200µL pipetted aliquot) | Unpreserved stool (10 µL transfer loop), Cary-Blair preserved stool (10 µL transfer loop), FecalSwab Cary-Blair (50 µL pipetted aliquot) FCT Cary-Blair (200µL pipetted aliquot) | FCT Cary-Blair (200µL pipetted aliquot) |
| Assay Format | PCR | Same | Same | Same |
Page 16
| Item | Predicate: BD MAX EBP (K140111, K214122) | Proposed: BD Enteric Bacterial Panel for BD COR™ System | Predicate: BD MAX xEBP (K170308, K214122) | Proposed BD Enteric Bacterial Panel plus for BD COR™ System |
|---|---|---|---|---|
| Organisms Detected | • Salmonella spp.• Campylobacter spp. (jejuni and coli)• Shigella spp. / Enteroinvasive E. coli (EIEC)• Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing E. coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC. | Same | • Salmonella spp.*• Campylobacter spp. (jejuni and coli) *• Shigella spp. / Enteroinvasive E. coli (EIEC) *• Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing E. coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC. *• Plesiomonas shigelloides• Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae)• Enterotoxigenic Escherichia coli (ETEC) heat-labile enterotoxin (LT)/ heat-stable enterotoxin (ST) genes• Yersinia enterocolitica*The BD MAX xEBP assay must be used in conjunction with the BD MAX EBP assay and therefore when the assay is run all eight targets are tested. | Same |
| Analysis Platform | BD MAX System (Automated) | BD COR System (Automated) | BD MAX System (Automated) | BD COR System (Automated) |
| Assay Controls | Sample Processing Control | Same | Sample Processing Control | Same |
| Sample Buffer | Original | Reformulated to reduce potential environmental impact | Original | Reformulated to reduce potential environmental impact |
Page 17
| Item | Predicate: BD MAX EBP (K140111, K214122) | Proposed: BD Enteric Bacterial Panel for BD COR™ System | Predicate: BD MAX xEBP (K170308, K214122) | Proposed BD Enteric Bacterial Panel plus for BD COR™ System |
|---|---|---|---|---|
| Organisms Detected | • Salmonella spp.• Campylobacter spp. (jejuni and coli)• Shigella spp. / Enteroinvasive E. coli (EIEC)• Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing E. coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC. | Same | • Salmonella spp.*• Campylobacter spp. (jejuni and coli) *• Shigella spp. / Enteroinvasive E. coli (EIEC) *• Shiga toxin 1 (stx1) / Shiga toxin 2 (stx2) genes (found in Shiga toxin-producing E. coli [STEC]) as well as Shigella dysenteriae, which can possess a Shiga toxin gene (stx) that is identical to the stx1 gene of STEC. *• Plesiomonas shigelloides• Vibrio (V. vulnificus, V. parahaemolyticus, and V. cholerae)• Enterotoxigenic Escherichia coli (ETEC) heat-labile enterotoxin (LT)/ heat-stable enterotoxin (ST) genes• Yersinia enterocolitica*The BD MAX xEBP assay must be used in conjunction with the BD MAX EBP assay and therefore when the assay is run all eight targets are tested. | Same |
| Analysis Platform | BD MAX System (Automated) | BD COR System (Automated) | BD MAX System (Automated) | BD COR System (Automated) |
| Assay Controls | Sample Processing Control | Same | Sample Processing Control | Same |
| Sample Buffer | Original | Reformulated to reduce potential environmental impact | Original | Reformulated to reduce potential environmental impact |
Page 18
Storage and Stability
Specimen Collection and Transport
In order to obtain an adequate specimen, the procedure for specimen collection must be followed closely. Immediately after collection, transfer the unpreserved liquid or soft stool specimen into the BD Fecal Collection and Transport Kit device according to the manufacturer's instructions. Transport and test the BD Fecal Collection and Transport System specimen as soon as possible within the conditions given in Table 2.
Note: The clinical performance study stored unpreserved stool at -70°C or 2-8°C prior to transferring to the BD Fecal Collection and Transport Kit device. The time between unpreserved stool collection and testing the BD Fecal Collection and Transport Kit device on the BD COR™ System did not extend beyond 120 hours when stored at 2-8°C. Please follow your institution's rules and protocols regarding sample storage validation for other temperatures.
Table 2: Storage and Stability of Stool Specimens Placed in the BD Fecal Collection and Transport System
| Specimen Stability | Transport and/or Storage Time/Temperature |
|---|---|
| Stool specimen in BD Fecal Collection and Transport System | Up to 120 hours at 2–8 °C or Up to 48 hours at 2–32 °C^a |
| BD COR™ Molecular Aliquot Tube | Up to 120 hours at 2–32 °C^a |
^a Inclusive of pierced and non-pierced durations.
Reagent Stability
BD EBP for BD COR™ System and BD EBP plus for BD COR™ System are stable at 2–27 °C through the stated expiration date. Do not use kits or kit components that have passed their stated expiration date(s).
BD EBP for BD COR™ System and BD EBP plus for BD COR™ System Master Mixes and Extraction plates are provided in sealed pouches with a desiccant. Once the pouch is opened, both plates should be placed into the BD COR™ MX Analyzer. The plates must be used within 5 days or until printed expiration, whichever is first (Table 3). Once the Enteric Bacterial Panel Bulk Diluent bottle is opened, it should be placed on board and must be used within 45 days or until printed expiration, whichever is first.
Page 19
Table 3: BD EBP and BD EBP plus Assay Reagent Stability on Board the BD COR™ System
| Reagent | Temperature | Stability |
|---|---|---|
| Master Mix Plates | Up to 32 °C | Up to 5 days |
| Extraction Plates | Up to 32 °C | Up to 5 days |
| Liquid Reagent Plates | Up to 32 °C | Up to 5 days |
| BD Enteric Bacterial Panel Diluent for BD COR™ (Bottle) | Up to 32 °C | Up to 45 days |
Analytical Performance
Configuration Equivalence
An analytical equivalence study was performed on low positive specimens for all BD EBP for BD COR™ System targets when processed with BD EBP for BD COR™ System or BD EBP plus for BD COR™ System. All BD EBP for BD COR™ System targets were equivalent at both 2x and 5x LoD when tested in either BD EBP for BD COR™ System or BD EBP plus for BD COR™ System configuration. All targets demonstrated ≥95% positivity and negativity in both configurations. In addition, the 90% confidence intervals for the difference in mean Ct.Score between BD EBP for BD COR™ System and BD EBP plus for BD COR™ System were contained within the interval of [-6% of the reference mean, +6% of the reference mean]. This data demonstrates that the BD EBP for BD COR™ System and BD EBP plus for BD COR™ System configurations perform equivalently for the four BD EBP for BD COR™ System targets. Therefore, the BD EBP plus for BD COR™ System was used as the representative assay in the clinical study and many of the analytical performance studies (Table 4).
Table 4: Assay Used in Analytical V&V Studies
| Analytical V&V Study | Assay Used in V&V Study |
|---|---|
| Limit of Detection (LoD) | BD EBP plus only |
| Reproducibility and Precision | BD EBP plus only |
| Specimen Stability | BD EBP plus only |
| Interfering Substances | BD EBP plus only |
| Mixed Infection | BD EBP plus only |
| Carry Over Contamination | BD EBP and BD EBP plus |
| Environmental Tolerance | BD EBP plus only |
| Freeze Thaw Stability | BD EBP plus only |
| Inclusivity | BD EBP plus only |
| Configuration Equivalency | BD EBP and BD EBP plus |
| Cross-Reactivity | BD EBP plus only |
| External Controls | BD EBP plus only |
| Reagent Stability | BD EBP and EBP plus |
| Clinical Study | BD EBP plus only |
Page 20
Analytical Sensitivity
The analytical sensitivity/Limit of Detection (LoD) of the BD EBP plus for BD COR™ System in the BD Fecal Collection and Transport Kit was determined as follows: Individual microbial suspensions were prepared from at least two (2) representative strains of the target organisms detected by the BD EBP plus for BD COR™ System. Each target organism was quantified prior to testing. Positive specimens were prepared by inoculating pooled stool in the BD Fecal Collection and Transport Kit with multiple concentrations of each representative strain. Each matrix suspension was tested with at least 20 replicates per concentration using at least 3 BD COR™ Systems and 3 different lots of the BD EBP plus for BD COR™ System. Determined LoDs were then confirmed with additional replicates. Analytical sensitivity (LoD), defined as the lowest concentration at which at least 95% of all replicates tested positive, ranged from 116 to 10,705 units/mL depending on the target organism. (Table 5).
Table 5: Limit of Detection of the BD EBP plus Assay
| Organism/Strain ID | Catalog Number | Limit of Detection (CFU/mL in FCT) |
|---|---|---|
| Salmonella Typhimurium | ATCC® 14028 | 923 |
| Salmonella enteritidis | ATCC® 13076 | 2,769 |
| Shigella sonnei | ATCC® 9290 | 242 |
| Shigella flexneri | ATCC® 700930 | 242 |
| Campylobacter jejuni | ATCC® 43429 | 153 |
| Campylobacter coli | ATCC® 43134 | 116 |
| Escherichia coli (STEC; stx1a) | ATCC® 43890 | 1,077 |
| Escherichia coli (STEC; stx2a) | ATCC® 43889 | 344 |
| Plesiomonas shigelloides | ATCC® 14029 | 8,269 |
| Plesiomonas shigelloides | ATCC® 14030 | 936 |
| Yersinia enterocolitica | ATCC® 9610 | 2,385 |
| Yersinia enterocolitica | ATCC® 49397 | 265 |
| Escherichia coli (ETEC; sta2) | ATCC® 43896 | 361 |
| Escherichia coli (ETEC; sta1, sta2, eltA) | ATCC® 35401 | 121 |
| Vibrio parahaemolyticus^a | ATCC® 17802 | 207 |
| Vibrio cholerae^a | ATCC® 14033 | 149 |
| Vibrio vulnificus^a | ATCC® 27562 | 10,705 |
^a Vibrio should be expressed as cells/mL.
Analytical Reactivity (Inclusivity)
A variety of BD EBP plus for BD COR™ System target strains were included in this study. Strain selection criteria included prevalence, serotype and geographic location, where appropriate. One-hundred and forty-three (143) strains were tested, including strains from
Page 21
public collections and well-characterized clinical isolates. Inclusivity testing included 26 strains of Salmonella spp., 17 strains of Shigella/EIEC,18 strains of Campylobacter spp., 26 strains of STEC, 8 strains of Plesiomonas shigelloides, 10 strains of Yersinia enterocolitica, 28 strains of Vibrio (cholerae, parahaemolyticus and vulnificus) and 10 strains of ETEC LT/ST. The strains were tested at ~3x LoD of the corresponding strain in FCT. The BD EBP plus for BD COR™ System correctly identified 143 of the 143 strains tested upon initial testing.
Analytical Specificity/Cross-Reactivity
The BD EBP plus for BD COR™ System was performed on samples containing phylogenetically related microorganisms likely to be found in stool specimens. The bacterial cells, yeasts, viruses and parasites were tested in the Fecal Collection and Transport tube at > 1E+06 cells/mL, CFU/mL, genomic DNA cp/mL, or EB/mL, and viruses were tested at 1E+05 viral particles, TCID50/mL or genomic equivalents/mL. Organisms tested are represented in Table 6.
- Most of the bacterial strains, yeast, parasites, and viruses tested produced negative results with the BD EBP plus assay.
- No cross-reactivity was observed for STEC, Shigella/EIEC, Yersinia enterocolitica, Plesiomonas shigelloides, and ETEC.
- Campylobacter sputorum biovar sputorum yielded a positive result for Campylobacter spp. during initial testing. However, no positive results were recorded at ≤1.0E+04 CFU/mL in FCT.
- Adenovirus Type 3 yielded a positive result for Salmonella spp. during initial testing. However, no positive results were recorded at ≤ 7.20E+04 TCID50/mL.
- The following 7 Vibrio species were detected by the BD EBP plus: V. brasiliensis, V. campbellii, V. harveyi, V. hispanicus, V. mimicus, V. nereis, and V. tubiashii.
- Two (2) strains of V. mimicus produced positive results with the BD EBP plus assay. However, no positive results were recorded at ≤1.0E+04 cells/mL in FCT.
- One (1) strain of V. hispanicus produced positive results with the BD EBP plus assay. However, no positive results were recorded at ≤1.0E+03 cells/mL in FCT.
Page 22
- One (1) strain of V. campbellii and V. tubiashii produced positive results with the BD EBP plus assay. However, no positive results were recorded at ≤1.49E+02 cells/mL in FCT.
- One (1) strain of V. brasiliensis, V. harveyi, and V. nereis produced positive results with the BD EBP plus assay. These strains were still cross-reactant at 1.49E+02 cells/mL in FCT.
Table 6: Organisms Tested in BD EBP plus Assay to Determine Analytical Specificity
| Organism | Source |
|---|---|
| Abiotrophia defectiva | ATCC® 49176 |
| Acinetobacter baumannii | ATCC® 19606 |
| Acinetobacter lwoffii | ATCC® 15309 |
| Adenovirus Type 1 | Zeptometrix® 0810050CF |
| Adenovirus Type 14 | Zeptometrix® 0810108CF |
| Adenovirus Type 3 | Zeptometrix® 0810062CF |
| Adenovirus Type 4 | Zeptometrix® 0810070CF |
| Adenovirus Type 40 | Zeptometrix® 0810084CF |
| Adenovirus Type 41 | Zeptometrix® 0810085CF |
| Adenovirus Type 8 | Zeptometrix® 0810069CF |
| Aeromonas caviae | ATCC® 15468 |
| Aeromonas hydrophila | ATCC® 7966 |
| Aeromonas schubertii | ATCC® 43700 |
| Aeromonas veronii | ATCC® 35623 |
| Alcaligenes faecalis subsp. faecalis | ATCC® 8750 |
| Anaerococcus tetradius | ATCC® 35098 |
| Arcobacter butzleri | ATCC® 49616 |
| Arcobacter cryaerophilus | ATCC® 43158 |
| Astrovirus Type 4 | Zeptometrix® 0810273CF |
| Bacteroides caccae | ATCC® 43185 |
| Bacteroides fragilis | ATCC® 25285 |
| Bacteroides stercoris | ATCC® 43183 |
| Bacteroides thetaiomicron | ATCC® 29148 |
| Bacteroides vulgatus | ATCC® 8482 |
| Bifidobacterium adolescentis | ATCC® 15703 |
| Bifidobacterium bifidum | ATCC® 29521 |
| Bifidobacterium longum subsp. longum | ATCC® 15707 |
| Campylobacter hyointestinalis | CCUG 24180 |
| Campylobacter sputorum biovar sputorum | CCUG 9728 |
| Cedecea davisae | ATCC® 33431 |
| Citrobacter freundii | ATCC® 8090 |
| Citrobacter koseri | ATCC® 27028 |
| Citrobacter sedlakii | ATCC® 51115 |
Page 23
| Organism | Source |
|---|---|
| Clostridium difficile | ATCC® 43598 |
| Clostridium difficile | ATCC® 700057 |
| Clostridium histolyticum | ATCC® 19401 |
| Clostridium novyi | ATCC® 19402 |
| Clostridium perfringens | ATCC® 13124 |
| Clostridium ramosum | ATCC® 25582 |
| Clostridium septicum | ATCC® 12464 |
| Clostridium sordellii | ATCC® 9714 |
| Clostridium tetani | ATCC® 19406 |
| Collinsella aerofaciens | ATCC® 25986 |
| Cryptosporidium parvum | Iowa |
| Cytomegalovirus | Zeptometrix® 0810003CF |
| Desulfovibrio piger | ATCC® 29098 |
| Edwardsiella tarda | ATCC® 15947 |
| Enterobacter aerogenes | ATCC® 13048 |
| Enterobacter cloacae subsp. cloacae | ATCC® 35030 |
| Enterococcus faecalis | ATCC® 29212 |
| Enterococcus faecium | ATCC® 700221 |
| Escherichia fergusonii | ATCC® 35469 |
| Escherichia hermannii | ATCC® 33650 |
| Escherichia vulneris | ATCC® 33821 |
| Fusobacterium varium | ATCC® 8501 |
| Gemella morbillorum | ATCC® 27824 |
| Giardia lamblia | H3 |
| Haemophilus influenzae | ATCC® 9007 |
| Hafnia alvei | ATCC® 13337 |
| Helicobacter fennelliae | ATCC® 35683 |
| Helicobacter pylori | ATCC® 43504 |
| Herpes Simplex Virus Type 1 | Zeptometrix 0810005CF |
| Klebsiella oxytoca | ATCC® 33496 |
| Klebsiella pneumoniae subsp. pneumoniae | ATCC® 700603 |
| Lactobacillus acidophilus | ATCC® 4356 |
| Lactobacillus reuteri | ATCC® 23272 |
| Lactococcus lactis subsp. lactis | ATCC® 11454 |
| Listeria monocytogenes | ATCC® 15313 |
| Megasphaera elsdenii | ATCC® 25940 |
| Morganella morganii subsp. morganii | ATCC® 25830 |
| Norovirus Group I (recombinant) | Zeptometrix® 0810086CF |
| Norovirus Group II | ZeptoMetrix® 0810087CF |
| Parabacteroides merdae | ATCC® 43184 |
| Peptoniphilus asaccharolyticus | ATCC® 14963 |
| Peptostreptococcus anaerobius | ATCC® 27337 |
| Porphyromonas asaccharolytica | ATCC® 25260 |
Page 24
| Organism | Source |
|---|---|
| Prevotella melaninogenica | ATCC® 25845 |
| Proteus mirabilis | ATCC® 25933 |
| Proteus penneri | ATCC® 35198 |
| Proteus vulgaris | ATCC® 6380 |
| Providencia alcalifaciens | ATCC® 9886 |
| Pseudomonas aeruginosa | ATCC® 27853 |
| Rotavirus | ZeptoMetrix® 0810041CF |
| Ruminococcus bromii | ATCC® 27255 |
| Serratia fonticola | ATCC® 29844 |
| Serratia liquefaciens | ATCC® 27592 |
| Serratia marcescens subsp. marcescens | ATCC® 13880 |
| Shewanella algae | ATCC® 51192 |
| Shimwellia blattae | ATCC® 29907 |
| Staphylococcus aureus subsp. aureus | ATCC® 43300 |
| Staphylococcus epidermidis | ATCC® 14990 |
| Stenotrophomonas maltophilia | ATCC® 13637 |
| Streptococcus agalactiae | ATCC® 13813 |
| Streptococcus intermedius | ATCC® 27335 |
| Streptococcus pyogenes | ATCC® 19615 |
| Streptococcus salivarius subsp. salivarius | ATCC® 7073 |
| Streptococcus suis | ATCC® 43765 |
| Trichomonas vaginalis | ATCC® 30001 |
| Veillonella parvula | ATCC® 10790 |
| Vibrio alginolyticus | CCUG 16324 |
| Vibrio brasiliensis | CCUG 48644 |
| Vibrio campbellii | CCUG 16330 |
| Vibrio harveyi | CCUG 23159 |
| Vibrio hispanicus | CCUG 56966T |
| Vibrio mimicus | CCUG 39638 |
| Vibrio mimicus | CCUG 48106 |
| Vibrio natriegens | CCUG 70547 |
| Vibrio nereis | CCUG 28585 |
| Vibrio tubiashii | CCUG 38428 |
| Yersinia bercovieri | CCUG 26329T |
| Yersinia frederiksenii | CCUG 11293T |
| Yersinia intermedia | CCUG 26583 |
| Yersinia kristensenii | CCUG 46842 |
Interfering Substances
Page 25
Twenty-six (26) biological and chemical substances that may occasionally be present in stool specimens were evaluated for potential interference with the BD EBP plus for BD COR™ System. Eight (8) of these substances were antibiotics tested together as a pool with each antibiotic at a concentration that may be found in a stool sample. Of the 26 substances tested, one (1) demonstrated interference. Anti-Fungal cream was found to interfere at levels above 25%. Results demonstrated no reportable interference with any other substance tested. Table 7 lists all tested substances and the concentrations at which no interference was observed. In addition, microorganisms that may be endogenously present in stool specimens were evaluated for potential interference with the BD EBP plus for BD COR™ System. Fourteen (14) microorganisms were tested at high concentration (> 2.00E+06 CFU/mL of stool). Results demonstrated no reportable interference with any microorganism tested. Table 8 lists all microorganisms tested and the concentrations at which no interference was observed.
Table 7: Exogenous and Endogenous Substances Tested for Interference.
| Substance | Concentration in Stool Where Interference Not Observed | Substance | Concentration in Stool Where Interference Not Observed |
|---|---|---|---|
| Fecal Fats | 7.0 mg/mL | Ex-Lax | 47.0 mg/mL |
| Human DNA | 21.9 ug/mL | Pepto Bismol | 59.0 mg/mL |
| Mucus | 12.5 mg/mL | Amoxicillin trihydrate^b | 64.0 mg/mL |
| Whole Human Blood | 50% | Metronidazole^b | 60.8 mg/mL |
| Hydrocortisone | 15% | Tetracycline HCl^b | 16.0 mg/mL |
| Moist Towelettes | 3 mm² (in FCT) | Ceftriaxone^b | 15.8 mg/mL |
| Mineral Oil | 50% | Sulfamethoxazole^b | 80.0 mg/mL |
| Preparation H | 50% | Trimethoprim^b | 16.0 mg/mL |
| Nystatin Anti fungal^a | 25% | Erythromycin^b | 14.0 mg/mL |
| Polysporin | 50% | Ciprofloxacin^b | 5.4 mg/mL |
| Spermicidal Lubricant | 50% | Tums | 31.0 mg/mL |
| Penaten/Zinc oxide | 25% | Naproxen | 81.0 mg/mL |
| Vagisil | 50% | Imodium | 2.5 mg/mL |
^a Substance displayed interference when tested at a higher concentration.
^b Substances tested together as a pool.
Page 26
Table 8: Microorganisms Tested for Interference
| Microorganism | Concentration in Stool Where Interference Not Observed | Microorganism | Concentration in Stool Where Interference Not Observed |
|---|---|---|---|
| Master Mix 1 | |||
| Salmonella Typhimurium | >2.00E+06 CFU/mL | Vibrio parahaemolyticus | >2.00E+06 CFU/mL |
| Campylobacter jejuni | Bacteroides fragilis | ||
| Shigella sonnei | Proteus vulgaris | ||
| Escherichia coli (stx1/stx2) | Bacteroides vulgatus^a | ||
| Plesiomonas shigelloides | Enterobacter aerogenes | ||
| Yersinia enterocolitica | Enterobacter cloacae | ||
| Escherichia coli (sta2) | Klebsiella pneumoniae | ||
| Master Mix 2 | |||
| Salmonella Typhimurium | >2.00E+06 CFU/mL | Vibrio parahaemolyticus | >2.00E+06 CFU/mL |
| Campylobacter jejuni | Bacteroides fragilis | ||
| Shigella sonnei | Proteus vulgaris | ||
| Escherichia coli (stx1/stx2)^a | 2.00E+05 CFU/mL | Bacteroides vulgatus^a | 2.00E+05 CFU/mL |
| Plesiomonas shigelloides | >2.00E+06 CFU/mL | Enterobacter aerogenes | >2.00E+06 CFU/mL |
| Yersinia enterocolitica | Enterobacter cloacae | ||
| Escherichia coli (sta2) | Klebsiella pneumoniae |
^a Microorganism displayed interference when tested at a higher concentration.
Mixed Infection/Competitive Interference
The mixed infection and competitive interference study was designed to evaluate the ability of the BD EBP plus for BD COR™ System to detect low-positive results in the presence of other targets at high concentrations. The study was conducted using two target groups, each assessed per master mix. For target group one, four sets were prepared, each containing four organisms: Salmonella typhimurium, Campylobacter jejuni, Shigella sonnei, and Escherichia coli (stx1-a). Within each set, three of the four targets were prepared at approximately twice their respective limits of detection (LoD), while one target was prepared at a high concentration (≥1E+06 CFU/mL), all in a negative background stool matrix. For target group two, four sets were similarly prepared, each containing four organisms: Yersinia
Page 27
enterocolitica, Plesiomonas shigelloides, Escherichia coli (sta2), and Vibrio parahaemolyticus. As with target group one, three of the four targets in each set were prepared at ~2x their respective LoDs, and one target was prepared at a high concentration (≥1E+06 CFU/mL), in a negative stool matrix. All target organisms across both groups were successfully detected by the BD EBP plus for BD COR™ System when combined with their respective simulated high-concentration mixed infection preparations. These results demonstrate the system's robustness and reliability in detecting low-level targets in the presence of high-concentration co-infections.
Precision
Within-laboratory precision was evaluated for the BD EBP plus for BD COR™ System at one site with one reagent lot. Testing was performed over 12 days, with 2 runs per day per technologist (2 technologists), for a total of 48 runs. Test samples were contrived in negative stool matrix and included panel members at distinct target loads for Campylobacter jejuni, Shiga toxin-producing Escherichia coli (stx-1a), Salmonella typhimurium, Shigella sonnei, Plesiomonas shigelloides, Yersinia enterocolitica, Vibrio parahaemolyticus, and Enterotoxigenic Escherichia coli (sta2). Each panel member was tested in duplicate. The following target concentrations were used for spiking levels of the target organisms contained in each panel member:
- Moderate Positive (MP): 3x LoD
- Low Positive (LP): 2x LoD
- True negative (TN): No target
Precision study results for the BD EBP plus assay when performed on the BD COR™ System are described in Table 9.
Table 9: Overall Precision Study Results Using One Lot of BD EBP plus for BD COR™ System (Percent Agreement with Expected Results)
| Assay Panel | Analyte | Level | N Total | N Negative | N Positive | % Correct | 95% LCL | 95% UCL |
|---|---|---|---|---|---|---|---|---|
| Master Mix 1 | Shigella | TN | 72 | 72 | 0 | 100.00% | 94.90% | 100.00% |
| LP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| MP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| Salmonella | TN | 72 | 72 | 0 | 100.00% | 94.90% | 100.00% | |
| LP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| MP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| Campylobacter | TN | 72 | 72 | 0 | 100.00% | 94.90% | 100.00% | |
| LP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| MP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% |
Page 28
| Assay Panel | Analyte | Level | N Total | N Negative | N Positive | % Correct | 95% LCL | 95% UCL |
|---|---|---|---|---|---|---|---|---|
| STX | TN | 72 | 72 | 0 | 100.00% | 94.90% | 100.00% | |
| LP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| MP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| Master Mix 2 | Vibrio | TN | 72 | 72 | 0 | 100.00% | 94.90% | 100.00% |
| LP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| MP | 72 | 1 | 71 | 98.60% | 92.50% | 99.80% | ||
| Plesiomonas | TN | 72 | 72 | 0 | 100.00% | 94.90% | 100.00% | |
| LP | 72 | 1 | 71 | 98.60% | 92.50% | 99.80% | ||
| MP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| Yersinia | TN | 72 | 72 | 0 | 100.00% | 94.90% | 100.00% | |
| LP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| MP | 72 | 1 | 71 | 98.60% | 92.50% | 99.80% | ||
| ETEC | TN | 72 | 72 | 0 | 100.00% | 94.90% | 100.00% | |
| LP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% | ||
| MP | 72 | 0 | 72 | 100.00% | 94.90% | 100.00% |
Reproducibility
The site-to-site reproducibility study was performed at three (3) clinical sites (2 external and 1 internal) using one (1) reagent lot. Two (2) technologists performed two (2) runs per day, over 5 distinct days (consecutive or not), for a total of 60 runs. The panels used were the same as described in the Precision study above.
The overall site-to-site reproducibility percent agreements were 100% for the TN for all targets and ranged from 98.9% to 100% for both LP and MP. Results are summarized in Table 10.
Analysis of variance of the Ct score results from valid tests performed on positive panel members (see Table 11) within lab (total) yielded overall CV (%) ranging from 1.0%–3.4% for MP and 1.3%–3.4% for LP.
Table 10: Overall Percent Agreement for Site-to-Site Reproducibility
| Target | Category | Total Percent Agreement | 95% CI |
|---|---|---|---|
| Shigella | True Negative (TN)^a | 100.0% (90/90) | (95.9%, 100.0%) |
| Low Positive (LP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Moderate Positive (MP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Salmonella | True Negative (TN)^a | 100.0% (90/90) | (95.9%, 100.0%) |
| Low Positive (LP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Moderate Positive (MP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Campylobacter | True Negative (TN)^a | 100.0% (90/90) | (95.9%, 100.0%) |
Page 29
| Target | Category | Total Percent Agreement | 95% CI |
|---|---|---|---|
| Low Positive (LP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Moderate Positive (MP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| STX | True Negative (TN)^a | 100.0% (90/90) | (95.9%, 100.0%) |
| Low Positive (LP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Moderate Positive (MP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Vibrio | True Negative (TN)^a | 100.0% (90/90) | (95.9%, 100.0%) |
| Low Positive (LP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Moderate Positive (MP) | 98.9% (89/90) | (94.0%, 99.8%) | |
| Plesiomonas | True Negative (TN)^a | 100.0% (90/90) | (95.9%, 100.0%) |
| Low Positive (LP) | 98.9% (89/90) | (94.0%, 99.8%) | |
| Moderate Positive (MP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Yersinia | True Negative (TN)^a | 100.0% (90/90) | (95.9%, 100.0%) |
| Low Positive (LP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Moderate Positive (MP) | 98.9% (89/90) | (94.0%, 99.8%) | |
| ETEC | True Negative (TN)^a | 100.0% (90/90) | (95.9%, 100.0%) |
| Low Positive (LP) | 100.0% (90/90) | (95.9%, 100.0%) | |
| Moderate Positive (MP) | 100.0% (90/90) | (95.9%, 100.0%) |
^a For the True Negative Category, the reported agreement indicates percent of negative results.
Table 11: Variance Component Analysis for Site-to-Site Reproducibility
| Target | PCR Metric | Category | N | Mean | Within Run | Between Run | Between Day | Between Site | Total | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SD | %CV | SD | %CV | SD | %CV | SD | %CV | SD | %CV | |||||
| Shigella | Ct Score | Low Positive (LP) | 90 | 30.4 | 0.37 | 1.2 | 0.31 | 1 | 0.08 | 0.3 | 0.02 | 0.1 | 0.48 | 1.6 |
| Moderate Positive (MP) | 90 | 29.9 | 0.34 | 1.1 | 0.3 | 1 | 0 | 0 | 0 | 0 | 0.45 | 1.5 | ||
| Salmonella | Ct Score | Low Positive (LP) | 90 | 31.9 | 0.46 | 1.4 | 0.15 | 0.5 | 0.21 | 0.7 | 0.06 | 0.2 | 0.53 | 1.7 |
| Moderate Positive (MP) | 90 | 31.2 | 0.33 | 1 | 0.21 | 0.7 | 0.14 | 0.4 | 0.13 | 0.4 | 0.43 | 1.4 | ||
| Campylobacter | Ct Score | Low Positive (LP) | 90 | 31.9 | 0.39 | 1.2 | 0.18 | 0.6 | 0.03 | 0.1 | 0.14 | 0.4 | 0.45 | 1.4 |
| Moderate Positive (MP) | 90 | 31.3 | 0.29 | 0.9 | 0 | 0 | 0.03 | 0.1 | 0.23 | 0.7 | 0.37 | 1.2 | ||
| STX | Ct Score | Low Positive (LP) | 90 | 31.8 | 0.32 | 1 | 0.21 | 0.6 | 0.13 | 0.4 | 0.05 | 0.1 | 0.41 | 1.3 |
| Moderate Positive (MP) | 90 | 31.2 | 0.25 | 0.8 | 0.11 | 0.4 | 0.16 | 0.5 | 0 | 0 | 0.32 | 1 |
Page 30
| Target | PCR Metric | Category | N | Mean | Within Run | Between Run | Between Day | Between Site | Total | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SD | %CV | SD | %CV | SD | %CV | SD | %CV | SD | %CV | |||||
| Vibrio | Ct Score | Low Positive (LP) | 90 | 31.6 | 0.61 | 1.9 | 0 | 0 | 0.8 | 2.5 | 0.4 | 1.3 | 1.08 | 3.4 |
| Moderate Positive (MP) | 89 | 30.9 | 0.36 | 1.2 | 0.1 | 0.3 | 0.11 | 0.4 | 0.07 | 0.2 | 0.4 | 1.3 | ||
| Plesiomonas | Ct Score | Low Positive (LP) | 89 | 28.6 | 0.38 | 1.3 | 0.31 | 1.1 | 0.19 | 0.7 | 0 | 0 | 0.52 | 1.8 |
| Moderate Positive (MP) | 90 | 28.4 | 0.34 | 1.2 | 0.5 | 1.7 | 0.34 | 1.2 | 0 | 0 | 0.69 | 2.4 | ||
| Yersinia | Ct Score | Low Positive (LP) | 90 | 30.2 | 0.44 | 1.4 | 0.2 | 0.7 | 0.65 | 2.1 | 0 | 0 | 0.81 | 2.7 |
| Moderate Positive (MP) | 89 | 29.3 | 0.38 | 1.3 | 0 | 0 | 0.13 | 0.4 | 0.2 | 0.7 | 0.45 | 1.5 | ||
| ETEC | Ct Score | Low Positive (LP) | 90 | 31.4 | 0.46 | 1.5 | 0.24 | 0.8 | 0.2 | 0.6 | 0 | 0 | 0.56 | 1.8 |
| Moderate Positive (MP) | 90 | 30.9 | 0.54 | 1.7 | 0.28 | 0.9 | 0.86 | 2.8 | 0 | 0 | 1.05 | 3.4 |
The lot-to-lot reproducibility study was performed at one internal clinical site using three (3) reagent lots. Two (2) technologists performed two (2) runs per day, over 5 distinct days (consecutive or not), for a total of 60 runs. The panels used were the same as described in the Precision study above.
The overall lot-to-lot reproducibility percent agreements were 100% for the TN for all targets and ranged from 98.9% to 100% for LP and 97.8% to 100% MP. Results are summarized in Table 12.
Table 12: Overall Percent Agreement for Lot-to-Lot Reproducibility
| Analyte | Level | Percent Agreement Total | Confidence Intervals | |
|---|---|---|---|---|
| 95% LCL | 95% UCL | |||
| Shigella | TN | 100.0% (90/90) | 95.90% | 100.00% |
| LP | 100.0% (90/90) | 95.90% | 100.00% | |
| MP | 100.0% (90/90) | 95.90% | 100.00% | |
| Salmonella | TN | 100.0% (90/90) | 95.90% | 100.00% |
| LP | 100.0% (90/90) | 95.90% | 100.00% | |
| MP | 100.0% (90/90) | 95.90% | 100.00% | |
| Campylobacter | TN | 100.0% (90/90) | 95.90% | 100.00% |
| LP | 100.0% (90/90) | 95.90% | 100.00% | |
| MP | 100.0% (90/90) | 95.90% | 100.00% | |
| STX | TN | 100.0% (90/90) | 95.90% | 100.00% |
Page 31
| Analyte | Level | Percent Agreement Total | Confidence Intervals | |
|---|---|---|---|---|
| 95% LCL | 95% UCL | |||
| LP | 100.0% (90/90) | 95.90% | 100.00% | |
| MP | 100.0% (90/90) | 95.90% | 100.00% | |
| Vibrio | TN | 100.0% (90/90) | 95.90% | 100.00% |
| LP | 98.9% (89/90) | 94.00% | 99.80% | |
| MP | 97.8% (88/90) | 92.30% | 99.40% | |
| Plesiomonas | TN | 100.0% (90/90) | 95.90% | 100.00% |
| LP | 98.9% (89/90) | 94.00% | 99.80% | |
| MP | 100.0% (90/90) | 95.90% | 100.00% | |
| Yersinia | TN | 100.0% (90/90) | 95.90% | 100.00% |
| LP | 100.0% (90/90) | 95.90% | 100.00% | |
| MP | 98.9% (89/90) | 94.00% | 99.80% | |
| ETEC | TN | 100.0% (90/90) | 95.90% | 100.00% |
| LP | 100.0% (90/90) | 95.90% | 100.00% | |
| MP | 100.0% (90/90) | 95.90% | 100.00% |
Cross-Contamination for BD EBP for BD COR™ System
A study was conducted to investigate cross-contamination while processing samples with high microbial load of Campylobacter jejuni in the BD EBP assay. High positive samples contained Campylobacter jejuni at concentrations of ≥1 E+06 CFU/mL in the Fecal Collection and Transport tube. The negative samples consisted of Fecal Collection and Transport tubes without any target analyte. Twelve (12) replicates of the high positive panel member and 12 replicates of the negative panel member were alternated in the BD COR™ P-Rack and tested across 18 runs, using three BD COR™ Systems or a total of 216 positive and 216 negative samples tested. Of the 216 negative samples tested, two false positive results were obtained (0.93%).
Cross-Contamination for BD EBP plus for BD COR™ System
A study was conducted to investigate cross-contamination while processing samples with high microbial load of ETEC in the BD EBP plus assay. High positive samples contained ETEC at concentrations of ≥1 E+06 CFU/mL in the Fecal Collection and Transport tube. The negative samples consisted of Fecal Collection and Transport tubes without any target analyte. Twelve (12) replicates of the high positive panel member and 12 replicates of the negative panel member were alternated in the BD COR™ P-Rack and tested across 18 runs, using three BD COR™ Systems for a total of 216 positive and 216 negative samples tested. Of the 216 negative samples tested, no false positive results were obtained.
Page 32
Clinical Performance
Clinical performance characteristics of the BD EBP for BD COR™ System and BD EBP plus for BD COR™ System were determined in a multi-site investigational study. The study involved a total of six (6) geographically diverse clinical collection centers where stool specimens were collected as part of routine patient care. Remnant stools were de-identified and enrolled prospectively into the study and tested with the BD EBP plus for BD COR™ System. Specimens were obtained from pediatric or adult patients suspected of acute bacterial gastroenteritis, enteritis or colitis, for which diagnostic tests had been ordered by healthcare provider. Four sites performed BD EBP plus for BD COR™ System testing and/or comparator method testing. Retrospective specimens from a previous BD study and specimen vendors were added. The performance of the BD EBP plus for BD COR™ System was evaluated in comparison to a single FDA-cleared high sensitivity PCR assay for Salmonella spp., Shigella spp./EIEC, and Plesiomonas shigelloides and a two out of three composite comparator method for Campylobacter spp. (C. jejuni and C. coli), Shiga toxin (stx/stx1/stx2 genes), Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae), Yersinia enterocolitica, and ETEC.
A total of 1,682 prospective remnant specimens were collected and a total of 235 retrospectively collected specimens were also enrolled giving a total of 1,917 specimens included in this study. From them, 110 specimens were excluded due to inclusion/exclusion criteria not met, inadequate source documentation, specimen handling errors, and specimens outside of stability giving a total of 1,807 specimens compliant for testing. After exclusion of specimens due to testing non-compliance (79) and final non-reportable results, a total of 1,493 prospective and 200 retrospective specimens were evaluable with the BD EBP plus on the BD COR™ System and comparator assay(s) with at least one target included into the Positive Percent Agreement (PPA) and Negative Percent Agreement (NPA) calculations.
Table 13 describes the number of compliant prospective specimens enrolled by patient age, gender and specimen type.
Table 14 describes the number of compliant retrospective specimens enrolled by patient age and gender. Table 15 through Table 27 describe the performance characteristics of BD EBP for BD COR™ System and BD EBP plus for BD COR™ System that were observed during the clinical study.
Page 33
Table 13: Demographics Summary for Compliant Prospective Specimens by Specimen Type
| Demographic Characteristics | Frozen N=764 | Fresh N=729 | Combined N=1,493 |
|---|---|---|---|
| Gender | |||
| Male | 41.4% (316/764) | 43.5% (317/729) | 42.4% (633/1,493) |
| Female | 58.6% (448/764) | 56.5% (412/729) | 57.6% (860/1,493) |
| Unknown | 0.0% (0/764) | 0.0% (0/729) | 0.0% (0/1,493) |
| Age Group | |||
| <1 Year | 0.8% (6/764) | 1.5% (11/729) | 1.1% (17/1,493) |
| 1–4 Years | 6.0% (46/764) | 5.9% (43/729) | 6.0% (89/1,493) |
| 5–12 Years | 11.8% (90/764) | 11.4% (83/729) | 11.6% (173/1,493) |
| 13–18 Years | 11.4% (87/764) | 9.2% (67/729) | 10.3% (154/1,493) |
| 19–65 Years | 41.5% (317/764) | 41.0% (299/729) | 41.3% (616/1,493) |
| >65 Years | 28.5% (218/764) | 31.0% (226/729) | 29.7% (444/1,493) |
Table 14: Demographics Summary for Compliant Retrospective Specimens
| Demographic Characteristics | Total N=200 |
|---|---|
| Gender | |
| Male | 35.0% (70/200) |
| Female | 32.5% (65/200) |
| Unknown | 32.5% (65/200) |
| Age Group | |
| <1 Year | 2.0% (4/200) |
| 1–4 Years | 9.0% (18/200) |
| 5–12 Years | 14.0% (28/200) |
| 13–18 Years | 8.0% (16/200) |
| 19–65 Years | 54.5% (109/200) |
| > 65 Years | 11.0% (22/200) |
| Unknown | 1.5% (3/200) |
The performance of the BD EBP plus for BD COR™ System was evaluated for each panel test result using a single FDA-cleared test for Shigella spp. / EIEC, Salmonella spp., and Plesiomonas shigelloides. A composite comparator method consisting of two out of three independent FDA-cleared test methods was used for Campylobacter spp. (C. jejuni and C. coli), Shiga toxin (stx/stx1/stx2 genes), Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae), Yersinia enterocolitica, and ETEC. Any specimen that tested positive by two assays was considered positive, whereas any specimen that tested negative by two assays was considered negative.
Page 34
Percent Agreement for Salmonella spp.
The BD EBP plus for BD COR™ System identified 94.7% and 99.4% of the Salmonella spp. prospective positive and negative specimens, respectively, and 98.3% and 98.5% of the retrospective positive and negative specimens, respectively (refer to Table 15) when compared to a single comparator.
Table 15: Salmonella spp. – Overall Performance
| Salmonella spp. Single Comparator | Total | ||
|---|---|---|---|
| Specimen Origin | Specimen Type | BD COR™ | Positive |
| Prospective | Combined Fresh and Frozen | Positive | 36 |
| Negative | 2^b | ||
| Total | 38 | ||
| PPA: 94.7% (82.7%, 98.5%) | |||
| NPA: 99.4% (98.9%, 99.7%) | |||
| Retrospective | Frozen | Positive | 58 |
| Negative | 1^d | ||
| Total | 59 | ||
| PPA: 98.3% (91.0%, 99.7%) | |||
| NPA: 98.5% (94.8%, 99.6%) |
^a Salmonella was detected in 1 of the 8 FP specimens when tested with an independent molecular method.
^b Salmonella was not detected in 1 of the 2 FN specimens when tested with an independent molecular method.
^c Salmonella was not detected in both FP specimens when tested with an independent molecular method.
^d Salmonella was not detected in the FN specimen when tested with an independent molecular method.
Percent Agreement for Campylobacter spp. (C. jejuni and C. coli)
The BD EBP plus for BD COR™ System identified 100% and 99.4% of the C. jejuni and C. coli prospective positive and negative specimens, respectively, and 100% of the retrospective positive and negative specimens (refer to Table 16) when compared to a two out of three composite comparator method.
Page 35
Table 16: Campylobacter spp. (C. jejuni and C. coli) – Overall Performance
| Campylobacter spp. (C. jejuni and C. coli) Composite Comparator | Total | ||
|---|---|---|---|
| Specimen Origin | Specimen Type | BD COR™ | Positive |
| Prospective | Combined Fresh and Frozen | Positive | 32 |
| Negative | 0^b | ||
| Total | 32 | ||
| PPA: 100.0% (89.3%, 100.0%) | |||
| NPA: 99.4% (98.1%, 99.8%) | |||
| Retrospective | Frozen | Positive | 67 |
| Negative | 0 | ||
| Total | 67 | ||
| PPA: 100.0% (94.6%, 100.0%) | |||
| NPA: 100.0% (95.0% 100.0%) |
^a Campylobacter was detected in all 3 FP specimens with one of the three comparator methods.
^b One specimen negative for Campylobacter with BD EBP plus but positive with the single FDA-cleared comparator was excluded because the parent tube was no longer available and complete composite comparator testing could not be obtained.
^c The sample size for NPA is smaller for Campylobacter spp. (C. jejuni and C. coli) as only a portion of the specimens with a negative result in BD EBP plus and with the single FDA-cleared comparator was tested with the complete composite comparator in the prospective and retrospective studies.
Percent Agreement for Shigella spp. / EIEC
The BD EBP plus for BD COR™ System identified 80.0% and 100% of the Shigella spp. / EIEC prospective positive and negative specimens, respectively, and 94.4% and 98.8% of the retrospective positive and negative specimens, respectively (refer to Table 17) when compared to a single comparator.
Page 36
Table 17: Shigella spp. / EIEC – Overall Performance
| Shigella spp. / EIEC Single Comparator | Total | ||
|---|---|---|---|
| Specimen Origin | Specimen Type | BD COR™ | Positive |
| Prospective | Combined Fresh and Frozen | Positive | 12 |
| Negative | 3^a | ||
| Total | 15 | ||
| PPA: 80.0% (54.8%, 93.0%) | |||
| NPA: 100.0% (99.7%, 100.0%) | |||
| Retrospective | Frozen | Positive | 34 |
| Negative | 2^c | ||
| Total | 36 | ||
| PPA: 94.4% (81.9%, 98.5%) | |||
| NPA: 98.8% (95.6%, 99.7%) |
^a Shigella spp. / EIEC was not detected in the 3 FN specimens when tested with an independent molecular method.
^b Shigella spp. / EIEC was not detected in both FP specimens when tested with an independent molecular method.
^c Shigella spp. / EIEC was not detected in 1 of the 2 FN specimens when tested with an independent molecular method.
Percent Agreement for Shiga toxins (stx/stx1/stx2 genes)
The BD EBP for BD COR™ System identified 100% and 99.8% of the Shiga toxin (stx/stx1/stx2 genes) prospective positive and negative specimens, respectively, and 100% of the retrospective positive and negative specimens (refer to Table 10) when compared to a two out of three composite comparator method (refer to Table 18).
As Shiga toxins (stx/stx1/stx2 genes) prevalence was low, an evaluation of contrived specimens was performed to supplement data collected in the study. These were prepared by spiking 5 different strains of Shiga toxin-producing E. coli (STEC) in negative stool matrix. Strains were spiked at various clinically relevant loads and randomly distributed among three (3) clinical sites for BD EBP plus for BD COR™ System testing. A positive agreement of 100% was obtained across the tested loads. Results are shown in Table 19 when compared to a two out of three composite comparator method.
Page 37
Table 18: Shiga Toxins (stx/stx1/stx2 genes) – Overall Performance
| Shiga Toxins (stx, stx1, and stx2 genes) Composite Comparator | Total | ||
|---|---|---|---|
| Specimen Origin | Specimen Type | BD COR™ | Positive |
| Prospective | Combined Fresh and Frozen | Positive | 10^a |
| Negative | 0 | ||
| Total | 10 | ||
| PPA: 100.0% (72.2%, 100.0%) | |||
| NPA: 99.8% (98.9%, 100.0%) | |||
| Retrospective | Frozen | Positive | 9 |
| Negative | 0 | ||
| Total | 9 | ||
| PPA: 100.0% (70.1%, 100.0%) | |||
| NPA: 100.0% (97.1%, 100.0%) |
^a One specimen positive for Shiga toxin with BD EBP plus and the single FDA-cleared comparator was excluded because the parent tube was no longer available and complete composite comparator testing could not be obtained.
^b The sample size for NPA is smaller for Shiga toxin as only a portion of the specimens with a negative result in BD BD COR EBP plus and with the single FDA-cleared comparator was tested with the complete composite comparator in the prospective and retrospective studies.
Table 19: Shiga Toxins (stx/stx1/stx2 genes) – Contrived Specimens Results
| Shiga Toxins | Expected Result | Total |
|---|---|---|
| Positive | Negative | |
| Positive | 50 | 0 |
| Negative | 0 | 250 |
| Total | 50 | 250 |
| PPA: 100.0% (92.9%, 100.0%) | ||
| NPA: 100.0% (98.5%, 100.0%) |
Percent Agreement for Plesiomonas shigelloides
The BD EBP plus for BD COR™ System identified 66.7% and 100% of the Plesiomonas shigelloides prospective positive and negative specimens, respectively, and 100% of the retrospective positive and negative specimens, respectively (refer to Table 20) when compared to a single comparator.
As Plesiomonas shigelloides prevalence was low, an evaluation of contrived specimens was performed to supplement data collected in the study. These were prepared by spiking 5 different strains of Plesiomonas shigelloides in negative stool matrix. Strains were spiked at various
Page 38
clinically relevant loads and randomly distributed among three (3) clinical sites for BD EBP plus for BD COR™ System testing. A positive agreement of 100% was obtained across the tested loads. Results are shown in Table 21.
Table 20: Plesiomonas shigelloides – Overall Performance
| Plesiomonas shigelloides Single Comparator | Total | ||
|---|---|---|---|
| Specimen Origin | Specimen Type | BD COR™ | Positive |
| Prospective | Combined Fresh and Frozen | Positive | 2 |
| Negative | 1^a | ||
| Total | 3 | ||
| PPA: 66.7% (20.8%, 93.9%) | |||
| NPA: 100.0% (99.7%, 100.0%) | |||
| Retrospective | Frozen | Positive | 2 |
| Negative | 0 | ||
| Total | 2 | ||
| PPA: 100.0% (34.2%, 100.0%) | |||
| NPA: 100.0% (98.1%, 100.0%) |
^a One specimen could not be tested with an independent molecular method.
Table 21: Plesiomonas shigelloides – Contrived Specimens Results
| Plesiomonas shigelloides | Expected Result | Total |
|---|---|---|
| Positive | Negative | |
| Positive | 50 | 0 |
| Negative | 0 | 250 |
| Total | 50 | 250 |
| PPA: 100.0% (92.9%, 100.0%) | ||
| NPA: 100.0% (98.5%, 100.0%) |
Percent Agreement for Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae)
The BD EBP plus for BD COR™ System identified 100% of the Vibrio spp. prospective positive and negative specimens, and 100% of the retrospective negative specimens (refer to Table 22) when compared to a two out of three composite comparator method.
As Vibrio spp. prevalence was low, an evaluation of contrived specimens was performed to supplement data collected in the study. These were prepared by spiking 5 different strains of Vibrio spp. in negative stool matrix. Strains were spiked at various clinically relevant loads and randomly distributed among three (3) clinical sites for BD EBP plus for BD COR™ System testing. A positive agreement of 96.0% was obtained across the tested loads. Results are shown in Table 23.
Page 39
Table 22: Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae) – Overall Performance
| Vibrio spp. Comparator | Total | ||
|---|---|---|---|
| Specimen Origin | Specimen Type | BD COR™ | Positive |
| Prospective | Combined Fresh and Frozen | Positive | 2 |
| Negative | 0 | ||
| Total | 2 | ||
| PPA: 100.0% (34.2%, 100.0%) | |||
| NPA: 100.0% (99.2%, 100.0%) | |||
| Retrospective | Frozen | Positive | 0 |
| Negative | 0 | ||
| Total | 0 | ||
| PPA: Not Available | |||
| NPA: 100.0% (97.3%, 100.0%) |
^a The sample size for NPA is smaller for Vibrio spp. as only a portion of the specimens with a negative result with BD EBP plus and with the single FDA-cleared comparator was tested with the complete composite comparator in the prospective and retrospective studies.
Table 23: Vibrio spp. (V. vulnificus, V. parahaemolyticus, and V. cholerae) – Contrived Specimens Results
| Vibrio spp. | Expected Result | Total |
|---|---|---|
| Positive | Negative | |
| Positive | 48 | 0 |
| Negative | 2 | 250 |
| Total | 50 | 250 |
| PPA: 96.0% (86.5%, 98.9%) | ||
| NPA: 100.0% (98.5%, 100.0%) |
Percent Agreement for ETEC (Heat-Labile Enterotoxin (LT) / Heat-Stable Enterotoxin (ST) Genes)
The BD EBP plus for BD COR™ System identified 70.6% and 99.8% of the ETEC prospective positive and negative specimens, respectively, and 100% and 99.2% of the retrospective positive and negative specimens, respectively (refer to Table 24) when compared to a two out of three composite comparator.
As ETEC prevalence was low, an evaluation of contrived specimens was performed to supplement data collected in the study. These were prepared by spiking 5 different strains of ETEC in negative stool matrix. Strains were spiked at various clinically relevant loads and
Page 40
randomly distributed among three (3) clinical sites for BD EBP plus for BD COR™ System testing. A positive agreement of 100% was obtained across the tested loads. Results are shown in Table 25.
Table 24: ETEC (Heat-Labile Enterotoxin (LT) / Heat-Stable Enterotoxin (ST) Genes) – Overall Performance
| ETEC Composite Comparator | Total | ||
|---|---|---|---|
| Specimen Origin | Specimen Type | BD COR™ | Positive |
| Prospective | Fresh | Positive | 9 |
| Negative | 1^b | ||
| Total | 10 | ||
| PPA: 90.0% (59.6%, 98.2%) | |||
| NPA: 99.6% (97.7%, 99.9%) | |||
| Prospective | Frozen | Positive | 3 |
| Negative | 4^d | ||
| Total | 7 | ||
| PPA: 42.9% (15.8%, 75.0%) | |||
| NPA: 100.0% (98.5%, 100.0%) | |||
| Retrospective | Frozen | Positive | 13 |
| Negative | 0 | ||
| Total | 13 | ||
| PPA: 100.0% (77.2%, 100.0%) | |||
| NPA: 99.2% (95.7%, 99.9%) |
^a ETEC was detected in the FP specimen with one of the three comparator methods in the prospective and retrospective studies.
^b ETEC was not detected in the FN specimen with one of the three comparator methods.
^c The sample size for NPA is smaller for ETEC as only a portion of the specimens with a negative result with COR EBP plus and with the single FDA-cleared comparator was tested with the complete composite comparator in the prospective and retrospective studies.
^d ETEC was not detected in all 4 FN specimens with one of the three comparator methods.
Table 25: ETEC (Heat-Labile Enterotoxin (LT) / Heat-Stable Enterotoxin (ST) Genes) Contrived Specimens Results
| ETEC | Expected Result | Total |
|---|---|---|
| Positive | Negative | |
| Positive | 50 | 0 |
| Negative | 0 | 250 |
| Total | 50 | 250 |
| PPA: 100.0% (92.9%, 100.0%) | ||
| NPA: 100.0% (98.5%, 100.0%) |
Page 41
Percent Agreement for Yersinia enterocolitica
The BD EBP plus for BD COR™ System identified 100% of the Y. enterocolitica prospective positive and negative specimens, and 100% of the retrospective positive and negative specimens (refer to Table 26) when compared to a two out of three composite comparator method.
As Yersinia enterocolitica prevalence was low, an evaluation of contrived specimens was performed to supplement data collected in the study. These were prepared by spiking 5 different strains of Yersinia enterocolitica in negative stool matrix. Strains were spiked at various clinically relevant loads and randomly distributed among three (3) clinical sites for BD EBP plus for BD COR™ System testing. A positive agreement of 100% was obtained across the tested loads. Results are shown in Table 27.
Table 26: Yersinia enterocolitica – Overall Performance
| Yersinia enterocolitica Composite Comparator | Total | ||
|---|---|---|---|
| Specimen Origin | Specimen Type | BD COR™ | Positive |
| Prospective | Combined Fresh and Frozen | Positive | 4 |
| Negative | 0^a | ||
| Total | 4 | ||
| PPA: 100.0% (51.0%, 100.0%) | |||
| NPA: 100.0% (99.2%, 100.0%) | |||
| Retrospective | Frozen | Positive | 2 |
| Negative | 0 | ||
| Total | 2 | ||
| PPA: 100.0% (34.2%, 100.0%) | |||
| NPA: 100.0% (97.3%, 100.0%) |
^a One specimen negative for Y. enterocolitica with BD EBP plus and positive with the single FDA-cleared comparator was excluded because two comparators of the composite comparator disagreed and the specimen for the tiebreaker was non-compliant. One specimen negative for Y. enterocolitica with BD EBP plus and positive with the single FDA-cleared comparator was excluded because two comparators of the composite disagreed and the tiebreaker gave a final non-reportable result.
^b The sample size for NPA is smaller for Yersinia enterocolitica as only a portion of the specimens with a negative result with COR EBP plus and with the single FDA-cleared comparator was tested with the composite comparator in the prospective and retrospective studies.
Table 27: Yersinia enterocolitica – Contrived Specimens Results
| Yersinia enterocolitica | Expected Result | Total |
|---|---|---|
| Positive | Negative | |
| Positive | 50 | 0 |
| Negative | 0 | 250 |
| Total | 50 | 250 |
| PPA: 100.0% (92.9%, 100.0%) | ||
| NPA: 100.0% (98.5%, 100.0%) |
Page 42
Non-Reportable Results for BD EBP for BD COR™ System and BD EBP plus for BD COR™ System
Non-reportable results were defined as results obtained while assessing the BD EBP plus for BD COR™ System targets with the BD EBP plus assay on BD COR™ System which resulted in a sample processing control or system failure. A failure may also occur when the External Control produces an unexpected result such as an External Positive Control that produces a negative result or an External Negative Control that produces a positive result.
For non-reportable rate calculations, the specimen and the BD EBP for BD COR™ System and BD EBP plus for BD COR™ System must be compliant to qualify the data included in the calculation for the denominator of the UNR/IND/INC rate. A UNR is counted in the numerator only if it is specimen compliant, BD EBP for BD COR™ System and BD EBP plus for BD COR™ System compliant, and External Controls yield expected results. External Controls are not considered for IND/INC numerator calculations. Non-reportable rates with BD EBP for BD COR™ System and BD EBP plus for BD COR™ System are shown in Table 28 and Table 29, respectively.
Table 28: Summary of BD EBP for BD COR™ System Total Non-Reportable Rate for Combined Targets
| Combined EBP Targets | Unresolved Rate | Indeterminate Rate | Incomplete Rate | Total UNR+IND+INC Rate |
|---|---|---|---|---|
| Specimen Origin | Initial (95% CI) | Final^a (95% CI) | Initial (95% CI) | Final^a (95% CI) |
| Prospective | 3.1% 47/1,537 (2.3%, 4.0%) | 1.6% 24/1,514 (1.1%, 2.3%) | 0.1% 1/1,537 (0.0%, 0.4%) | 0.0% 0/1,514 (0.0%, 0.2%) |
| Retrospective | 3.0% 6/200 (1.4%, 6.4%) | 2.0% 4/200 (0.8%, 5.0%) | 0.0% 0/200 (0.0%, 1.9%) | 0.0% 0/200 (0.0%, 1.9%) |
^a The final rate is calculated with valid repeats only.
Page 43
Table 29: Summary of BD EBP plus for BD COR™ System Total Non-Reportable Rate for Combined Targets
| Combined EBP plus Targets | Unresolved Rate | Indeterminate Rate | Incomplete Rate | Total UNR+IND+INC Rate |
|---|---|---|---|---|
| Specimen Origin | Initial (95% CI) | Final^a (95% CI) | Initial (95% CI) | Final^a (95% CI) |
| Prospective | 4.9% 76/1,537 (4.0%, 6.1%) | 1.8% 28/1,514 (1.3%, 2.6%) | 0.1% 1/1,537 (0.0%, 0.4%) | 0.0% 0/1,514 (0.0%, 0.2%) |
| Retrospective | 4.5% 9/200 (2.4%, 8.3%) | 3.0% 6/200 (1.4%, 6.4%) | 0.0% 0/200 (0.0%, 1.9%) | 0.0% 0/200 (0.0%, 1.9%) |
^a The final rate is calculated with valid repeats only.
§ 866.3990 Gastrointestinal microorganism multiplex nucleic acid-based assay.
(a)
Identification. A gastrointestinal microorganism multiplex nucleic acid-based assay is a qualitativein vitro diagnostic device intended to simultaneously detect and identify multiple gastrointestinal microbial nucleic acids extracted from human stool specimens. The device detects specific nucleic acid sequences for organism identification as well as for determining the presence of toxin genes. The detection and identification of a specific gastrointestinal microbial nucleic acid from individuals exhibiting signs and symptoms of gastrointestinal infection aids in the diagnosis of gastrointestinal infection when used in conjunction with clinical evaluation and other laboratory findings. A gastrointestinal microorganism multiplex nucleic acid-based assay also aids in the detection and identification of acute gastroenteritis in the context of outbreaks.(b)
Classification. Class II (special controls). The special controls are set forth in FDA's guideline document entitled: “Class II Special Controls Guideline: Gastrointestinal Microorganism Multiplex Nucleic Acid-Based Assays for Detection and Identification of Microorganisms and Toxin Genes from Human Stool Specimens.” For availability of the guideline document, see § 866.1(e).