(235 days)
The Alinity m CMV assay is an in vitro polymerase chain reaction (PCR) assay for use with the automated Alinity m System to quantitate cytomegalovirus (CMV) DNA in human EDTA plasma. The Alinity m CMV assay is intended for use as an aid in the management of Hematopoietic Stem Cell Transplant and Solid Organ Transplant patients who are undergoing anti-cytomegalovirus therapy. The Alinity m CMV assay can be used to assess virological response to anti-cytomegalovirus therapy.
The results from the Alinity m CMV test must be interpreted within the context of all relevant clinical and laboratory findings. The Alinity m CMV test is not intended as a screening test for the presence of CMV DNA in blood or blood products.
Alinity m CMV is an in vitro polymerase chain reaction (PCR) assay for the quantitation of CMV DNA in human EDTA plasma.
This device is similar to the predicate device originally approved (PMA P210022) with the exception that the subject device may use a new DNA Polymerase as an alternative to original DNA Polymerase in the reagent formulation of the assay. This formulation difference does not introduce any changes to sample processing, assay procedure, or data reduction.
Additional studies were initiated to support the formulation of the assay with alternative DNA Polymerase. Supplemental data from these studies were used with data previously obtained from the analytical and clinical testing studies submitted in P210022.
The steps of the Alinity m CMV consist of sample preparation, real-time PCR assembly, amplification/detection, result calculation, and reporting. All stages of the Alinity m CMV procedure are executed automatically by the Alinity m System. Manual dilutions may be performed for low-volume specimens to meet the minimum volume requirement.
The Alinity m System is designed to be a random-access analyzer that can perform the Alinity m CMV assay in parallel with other Alinity m assays on the same instrument.
Alinity m CMV requires three separate assay specific kits as follows:
-
Alinity m CMV AMP Kit (List No. 09N46-095), consisting of 2 types of multi-well assay trays. The amplification trays (AMP TRAY 1) contain lyophilized, unit-dose PCR amplification/detection reagents and lyophilized, unit-dose IC in separate wells, and the activation trays (ACT TRAY 2) contain liquid unit-dose activation reagent. The intended storage condition for the Alinity m CMV AMP Kit is 2°C to 8°C.
-
Alinity m CMV CTRL Kit (List No. 09N46-085), consisting of negative controls, low positive controls, and high positive controls, each supplied as liquid in single-use tubes. The intended storage condition for the Alinity m CMV CTRL Kit is –25°C to –15°C.
-
Alinity m CMV CAL Kit (List No. 09N46-075), consisting of 2 calibrator levels, each supplied as liquid in single-use tubes. The intended storage condition for the Alinity m CMV CAL Kit is –25°C to –15°C.
CMV DNA from human plasma is extracted automatically on-board in the Alinity m System using the Alinity m Sample Prep Kit 2, Alinity m Lysis Solution, and Alinity m Diluent Solution. The Alinity m System employs magnetic microparticle technology to facilitate nucleic acid capture, wash, and elution. The resulting purified nucleic acids are then combined with liquid unit-dose Alinity m CMV activation reagent and lyophilized unit-dose Alinity m CMV amplification/detection reagents and transferred into a reaction vessel. Alinity m Vapor Barrier Solution is then added to the reaction vessel which is then transferred to an amplification/detection unit for PCR amplification, and real-time fluorescence detection of CMV targets.
At the beginning of the Alinity m CMV sample preparation process, a lyophilized unit-dose IC on the AMP Tray is rehydrated by the Alinity m System and delivered into each sample preparation reaction. The IC is then processed through the entire sample preparation and real-time PCR procedure along with the specimens, calibrators, and controls to demonstrate proper sample processing and validity.
The Alinity m CMV amplification/detection reagents consist of enzymes, primers, probes, and activation reagents that enable polymerization and detection.
A CMV calibration curve is required for determination of CMV DNA concentration. Two levels of calibrators are processed through sample preparation and PCR to generate the calibration curve. The concentration of CMV DNA in specimens and controls is then calculated from the stored calibration curve.
Assay controls are tested at or above an established minimum frequency to help ensure that instrument and reagent performance remains satisfactory. During each control event, a negative control, a low-positive control, and a high-positive control are processed through sample preparation and PCR procedures that are identical to those used for specimens.
The Alinity m CMV assay also utilizes the following:
- Alinity m CMV Application Specification File, (List No. 09N46-05B)
- Alinity m System and System Software (List No. 08N53)
- Alinity m Sample Prep Kit 2 (List No. 09N12-001)
- Alinity m Specimen Dilution Kit I (List No. 09N50-001)
- Alinity m System Solutions, (List No. 09N20):
- Alinity m Lysis Solution (List No. 09N20-001)
- Alinity m Diluent Solution (List No. 09N20-003)
- Alinity m Vapor Barrier Solution, (List No. 09N20-004)
- Alinity m Tubes and Caps (List No. 09N49):
- Alinity m LRV Tube (List No. 09N49-001)
- Alinity m Transport Tubes Pierceable Capped (List No. 09N49-010)
- Alinity m Transport Tube (List No. 09N49-011)
- Alinity m Pierceable Cap (List No. 09N49-012)
- Alinity m Aliquot Tube (List No. 09N49-013)
Here's a breakdown of the acceptance criteria and the study that proves the device meets them, based on the provided FDA 510(k) clearance letter for the Alinity m CMV assay:
The core of this submission is to demonstrate that a new formulation of the Alinity m CMV assay (using an "alternative DNA Polymerase") is substantially equivalent to the previously FDA-approved Alinity m CMV assay (using the "original DNA Polymerase"). Therefore, the acceptance criteria for the new formulation are implicitly that its performance characteristics (LoD, Linearity, Precision, Reproducibility, Method Comparison) are comparable to, and meet the established claims of, the original predicate device.
1. Table of Acceptance Criteria and Reported Device Performance
Since this is a submission demonstrating equivalence to an already approved device, the acceptance criteria are not explicitly stated as pass/fail thresholds in this document, but rather as meeting or being comparable to the performance of the predicate device (P210022). The reported performance shows that the new formulation did meet these implicit criteria.
| Performance Characteristic | Acceptance Criteria (Implicit - based on predicate P210022) | Reported Device Performance (Alternative DNA Polymerase) |
|---|---|---|
| Limit of Detection (LoD) | Detection rate ≥ 95% at 30 IU/mL (similar to predicate) | 96.9% detection rate at 30 IU/mL (95% CI: 93.4%, 98.6%) |
| Linear Range | Linear across 30 IU/mL (1.48 Log IU/mL) to 100,000,000 IU/mL (8.00 Log IU/mL) (similar to predicate) | Linear across 30 IU/mL to 100,000,000 IU/mL (r = 0.999) |
| Precision | Within-lab SD: - ≤ 0.25 Log IU/mL for 500-100,000,000 IU/mL - ≤ 0.50 Log IU/mL for 50-<500 IU/mL | Within-lab SD: - All panels 500-100,000,000 IU/mL (2.70-8.00 Log IU/mL) met ≤ 0.25 Log IU/mL (e.g., 0.04-0.06 Log IU/mL) - All panels 50-<500 IU/mL (1.70-<2.70 Log IU/mL) met ≤ 0.50 Log IU/mL (e.g., 0.17-0.27 Log IU/mL) |
| Lower Limit of Quantitation (LLoQ) | Reliably quantitated at 30 IU/mL with acceptable total error (TAE and TE ≤ 1.00 Log IU/mL) | At 30 IU/mL (1.48 Log IU/mL): TAE = 0.59 Log IU/mL, TE = 0.75 Log IU/mL (both within limit) |
| Reproducibility (Total SD & %CV) | Total SD and %CV values comparable to original formulation, with 95% CI of ratio containing 1.00 or upper bound < 1.00 (or within clinical equivalence margin) | All panels' Total SD and %CV ratios (New vs. Original) were clinically acceptable, with 95% CIs largely containing 1.00 or with upper bounds within the clinical equivalence margin. |
| Method Comparison (vs. Original Polymerase) | Deming regression slope near 1, intercept near 0, high correlation (r), and small mean bias | Slope = 1.01, Intercept = 0.01, r = 0.983 (N=141) Mean bias = 0.05 Log IU/mL (95% CI: 0.03, 0.08) |
2. Sample Sizes Used for the Test Set and Data Provenance
The "test set" in this context refers to the samples used to evaluate the performance of the new formulation (alternative DNA Polymerase) against the established performance of the original formulation.
- Limit of Detection (LoD): 192 total replicates at 30 IU/mL (96 for Lot 1, 48 for Lot 2, 48 for Lot 3). CMV negative human plasma used as diluent.
- Linear Range: 17 panel members tested. Panel members were prepared from dilution of the 1st WHO International Standard, cultured virus, or clinical specimens.
- Precision: 8 panel members, 270 replicates per panel member (3 lots x 3 replicates x 2 runs/day x 15 days). Panel members prepared from CMV positive specimen, cultured virus, or CMV plasmid DNA diluted in human EDTA plasma.
- Lower Limit of Quantitation (LLoQ): Data from the LoD study was used. (Therefore, 192 replicates at 30 IU/mL etc. as per LoD). Prepared from 1st WHO International Standard diluted in CMV-negative plasma.
- Reproducibility: 9-member panel (8 positive, 1 negative). Tested at 3 clinical sites, over 5 non-consecutive days with 2 runs per day. 4 replicates of each panel member per day/run.
- Positive Control: 111-119 total replicates per panel member.
- Negative Control: 119 total replicates.
- Panel members were prepared by spiking clinical specimen, cultured virus, or plasmid DNA into normal CMV negative K2EDTA plasma.
- Method Comparison: 141 samples. Source of these samples is not explicitly stated as clinical or contrived, but they are "samples with results that were within the common quantitation range of both [...] assays".
Data Provenance:
- The document implies the studies are part of the 510(k) submission, generally meaning prospective testing performed by the manufacturer.
- Country of Origin: Not explicitly stated for patient/specimen samples, but the study was conducted by Abbott Molecular Inc. in Des Plaines, Illinois, USA. The "3 clinical sites" for reproducibility are not named or localized.
- Retrospective or Prospective: All listed performance studies appear to be prospective analytical studies specifically designed to characterize the performance of the revised device. The P210022 PMA submission (predicate device) would have contained the primary clinical data, but this 510(k) focuses on analytical equivalence.
3. Number of Experts Used to Establish the Ground Truth for the Test Set and Qualifications
This device is an IVD (in vitro diagnostic) test for quantitating CMV DNA. The "ground truth" for quantitative nucleic acid tests is typically established using:
- Reference Materials: The 1st World Health Organization (WHO) International Standard for Human Cytomegalovirus for Nucleic Acid Amplification Techniques (NIBSC code 09/162) is repeatedly mentioned as the basis for quantitation and traceability. This is a highly standardized and globally recognized reference material, not expert consensus on individual patient samples.
- Analytical Methods: Dilutions of known concentrations (plasmids, cultured virus, clinical specimens) are used.
Therefore, for this type of quantitative IVD, the ground truth is established through analytical traceability to a well-characterized international standard and precise laboratory dilution/preparation methods, rather than by human rater consensus on individual cases. No human experts are reported as being used to establish a "ground truth" for the test set in the way a radiologist would for image analysis.
4. Adjudication Method for the Test Set
As the ground truth is established by analytical methods and reference standards, no adjudication method (like 2+1, 3+1) is relevant or mentioned for establishing the truth of the samples themselves. The studies measure the device's ability to consistently and accurately quantify CMV DNA relative to these known standards.
5. If a Multi Reader Multi Case (MRMC) Comparative Effectiveness Study was done
No MRMC comparative effectiveness study was done or is relevant for this device.
- This device is an in vitro diagnostic (IVD) assay, specifically a quantitative PCR test, not an AI-assisted diagnostic imaging tool.
- It provides a numerical output (CMV DNA concentration), not an interpretation that human readers would directly assist with or benefit from AI assistance.
- Therefore, the concept of "how much human readers improve with AI vs. without AI assistance" does not apply here.
6. If a Standalone (i.e. algorithm only without human-in-the loop performance) was done
This question is more applicable to AI/ML software as a medical device (SaMD). For a quantitative PCR assay:
- The device (Alinity m CMV) measures the quantity of CMV DNA independently and automatically on the Alinity m System.
- Its performance characteristics (LoD, linearity, precision, reproducibility) are inherently standalone (algorithm/device-only) measurements of its analytical capabilities, without human intervention in the result generation or analysis itself.
- Human interaction is primarily in sample loading, result review, and clinical interpretation in conjunction with other patient factors.
7. The Type of Ground Truth Used
The ground truth used for these analytical performance studies is based on:
- Reference Standards: Specifically, the 1st World Health Organization (WHO) International Standard for Human Cytomegalovirus for Nucleic Acid Amplification Techniques (NIBSC code 09/162).
- Contrived Samples: Highly characterized and precisely diluted samples using CMV positive clinical specimens, cultured virus, and plasmid DNA. The concentration of these contrived samples is "known" based on their preparation traceable to the WHO standard.
This is an analytical ground truth, not a clinical ground truth like pathology confirmation or patient outcomes data, nor is it expert consensus in the sense of a diagnostic interpretation.
8. The Sample Size for the Training Set
The provided document does not mention or describe a "training set" in the context of an AI/ML algorithm. This 510(k) is for a PCR assay, which is a chemical and enzymatic reaction-based test, not a machine learning model that undergoes a training phase.
If there were any internal optimization studies during the development of either the original or alternative polymerase formulations (e.g., to find optimal reagent concentrations), those might be analogous to "training" in a very broad sense, but they are not discussed in this 510(k) summary provided. The 510(k) focuses on the validation of the final product.
9. How the Ground Truth for the Training Set Was Established
As there is no "training set" for an AI/ML algorithm for this PCR assay, this question is not applicable.
FDA 510(k) Clearance Letter - Alinity m CMV
Page 1
July 1, 2025
Abbott Molecular Inc.
Stacy Ferguson
Director Regulatory Affairs
1350 East Touhy Avenue
Des Plaines, Illinois 60018
Re: K243485
Trade/Device Name: Alinity m CMV
Regulation Number: 21 CFR 866.3180
Regulation Name: Quantitative Cytomegalovirus Nucleic Acid Tests For Transplant Patient Management
Regulatory Class: Class II
Product Code: PAB
Dated: June 4, 2025
Received: June 5, 2025
Dear Stacy Ferguson:
We have reviewed your section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (the Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. Although this letter refers to your product as a device, please be aware that some cleared products may instead be combination products. The 510(k) Premarket Notification Database available at https://www.accessdata.fda.gov/scripts/cdrh/cfdocs/cfpmn/pmn.cfm identifies combination product submissions. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration. Please note: CDRH does not evaluate information related to contract liability warranties. We remind you, however, that device labeling must be truthful and not misleading.
If your device is classified (see above) into either class II (Special Controls) or class III (PMA), it may be subject to additional controls. Existing major regulations affecting your device can be found in the Code of Federal Regulations, Title 21, Parts 800 to 898. In addition, FDA may publish further announcements concerning your device in the Federal Register.
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K243485 - Stacy Ferguson Page 2
Additional information about changes that may require a new premarket notification are provided in the FDA guidance documents entitled "Deciding When to Submit a 510(k) for a Change to an Existing Device" (https://www.fda.gov/media/99812/download) and "Deciding When to Submit a 510(k) for a Software Change to an Existing Device" (https://www.fda.gov/media/99785/download).
Your device is also subject to, among other requirements, the Quality System (QS) regulation (21 CFR Part 820), which includes, but is not limited to, 21 CFR 820.30, Design controls; 21 CFR 820.90, Nonconforming product; and 21 CFR 820.100, Corrective and preventive action. Please note that regardless of whether a change requires premarket review, the QS regulation requires device manufacturers to review and approve changes to device design and production (21 CFR 820.30 and 21 CFR 820.70) and document changes and approvals in the device master record (21 CFR 820.181).
Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Part 801 and Part 809); medical device reporting (reporting of medical device-related adverse events) (21 CFR Part 803) for devices or postmarketing safety reporting (21 CFR Part 4, Subpart B) for combination products (see https://www.fda.gov/combination-products/guidance-regulatory-information/postmarketing-safety-reporting-combination-products); good manufacturing practice requirements as set forth in the quality systems (QS) regulation (21 CFR Part 820) for devices or current good manufacturing practices (21 CFR Part 4, Subpart A) for combination products; and, if applicable, the electronic product radiation control provisions (Sections 531-542 of the Act); 21 CFR Parts 1000-1050.
All medical devices, including Class I and unclassified devices and combination product device constituent parts are required to be in compliance with the final Unique Device Identification System rule ("UDI Rule"). The UDI Rule requires, among other things, that a device bear a unique device identifier (UDI) on its label and package (21 CFR 801.20(a)) unless an exception or alternative applies (21 CFR 801.20(b)) and that the dates on the device label be formatted in accordance with 21 CFR 801.18. The UDI Rule (21 CFR 830.300(a) and 830.320(b)) also requires that certain information be submitted to the Global Unique Device Identification Database (GUDID) (21 CFR Part 830 Subpart E). For additional information on these requirements, please see the UDI System webpage at https://www.fda.gov/medical-devices/device-advice-comprehensive-regulatory-assistance/unique-device-identification-system-udi-system.
Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21 CFR 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to https://www.fda.gov/medical-devices/medical-device-safety/medical-device-reporting-mdr-how-report-medical-device-problems.
For comprehensive regulatory information about medical devices and radiation-emitting products, including information about labeling regulations, please see Device Advice (https://www.fda.gov/medical-devices/device-advice-comprehensive-regulatory-assistance) and CDRH Learn (https://www.fda.gov/training-and-continuing-education/cdrh-learn). Additionally, you may contact the Division of Industry and Consumer Education (DICE) to ask a question about a specific regulatory topic. See the DICE website (https://www.fda.gov/medical-devices/device-advice-comprehensive-regulatory-
Page 3
K243485 - Stacy Ferguson Page 3
assistance/contact-us-division-industry-and-consumer-education-dice) for more information or contact DICE by email (DICE@fda.hhs.gov) or phone (1-800-638-2041 or 301-796-7100).
Sincerely,
Uwe Scherf -S
Uwe Scherf, M.Sc., Ph.D.
Director
Division of Microbiology Devices
OHT7: Office of In Vitro Diagnostics
Office of Product Evaluation and Quality
Center for Devices and Radiological Health
Enclosure
Page 4
DEPARTMENT OF HEALTH AND HUMAN SERVICES
Food and Drug Administration
Indications for Use
Form Approved: OMB No. 0910-0120
Expiration Date: 06/30/2023
See PRA Statement below.
510(k) Number (if known): K243485
Device Name: Alinity m CMV
Indications for Use (Describe)
The Alinity m CMV assay is an in vitro polymerase chain reaction (PCR) assay for use with the automated Alinity m System to quantitate cytomegalovirus (CMV) DNA in human EDTA plasma. The Alinity m CMV assay is intended for use as an aid in the management of Hematopoietic Stem Cell Transplant and Solid Organ Transplant patients who are undergoing anti-cytomegalovirus therapy. The Alinity m CMV assay can be used to assess virological response to anti-cytomegalovirus therapy.
The results from the Alinity m CMV test must be interpreted within the context of all relevant clinical and laboratory findings. The Alinity m CMV test is not intended as a screening test for the presence of CMV DNA in blood or blood products.
Type of Use (Select one or both, as applicable)
☒ Prescription Use (Part 21 CFR 801 Subpart D)
☐ Over-The-Counter Use (21 CFR 801 Subpart C)
CONTINUE ON A SEPARATE PAGE IF NEEDED.
This section applies only to requirements of the Paperwork Reduction Act of 1995.
DO NOT SEND YOUR COMPLETED FORM TO THE PRA STAFF EMAIL ADDRESS BELOW.
The burden time for this collection of information is estimated to average 79 hours per response, including the time to review instructions, search existing data sources, gather and maintain the data needed and complete and review the collection of information. Send comments regarding this burden estimate or any other aspect of this information collection, including suggestions for reducing this burden, to:
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"An agency may not conduct or sponsor, and a person is not required to respond to, a collection of information unless it displays a currently valid OMB number."
FORM FDA 3881 (6/20) Page 1 of 1 PSC Publishing Services (301) 443-6740 EF
Page 5
Alinity m CMV 510(k) K243485
October 2024
510(k) Summary
Table of Contents
1.0 510(k) Summary ...................................................................................................... 2
- 1.1 Submitter.......................................................................................................... 2
- 1.2 Device Information.......................................................................................... 2
- 1.3 Predicate Device .............................................................................................. 2
- 1.4 Device Description .......................................................................................... 3
- 1.5 Intended Use .................................................................................................... 6
- 1.6 Similarities and Differences to Predicate Device ............................................ 6
- 1.7 Performance Data ............................................................................................ 9
- 1.8 Conclusions Drawn from the Studies............................................................ 22
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Alinity m CMV 510(k) K243485
October 2024
1.0 510(k) Summary
This 510(k) summary of safety and effectiveness information is being submitted in accordance with the requirement of 21 CFR Section 807.92(c).
1.1 Submitter
Applicant Name and Address: Abbott Molecular Inc.
1300 E. Touhy Avenue
Des Plaines, IL 60018
Contact Person: Stacy Ferguson
Director Regulatory Affairs
Abbott Molecular, Inc.
1300 E. Touhy Avenue
Des Plaines, IL 60018
Phone: 224-361-7449
Fax: 224-361-7269
Date Prepared: October 31, 2024
1.2 Device Information
| Trade Name | Regulation Name | Product Code | Regulation No. | Class |
|---|---|---|---|---|
| Alinity m CMV | Quantitative cytomegalovirus nucleic acid tests for transplant patient management | PAB | 21 CFR 866.3180 | II |
1.3 Predicate Device
| Device Name | Predicate Device | PMA | Approved |
|---|---|---|---|
| Alinity m CMV | Alinity m CMV | P210022 | 05/05/2022 |
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1.4 Device Description
Alinity m CMV is an in vitro polymerase chain reaction (PCR) assay for the quantitation of CMV DNA in human EDTA plasma.
This device is similar to the predicate device originally approved (PMA P210022) with the exception that the subject device may use a new DNA Polymerase as an alternative to original DNA Polymerase in the reagent formulation of the assay. This formulation difference does not introduce any changes to sample processing, assay procedure, or data reduction.
Additional studies were initiated to support the formulation of the assay with alternative DNA Polymerase. Supplemental data from these studies were used with data previously obtained from the analytical and clinical testing studies submitted in P210022.
The steps of the Alinity m CMV consist of sample preparation, real-time PCR assembly, amplification/detection, result calculation, and reporting. All stages of the Alinity m CMV procedure are executed automatically by the Alinity m System. Manual dilutions may be performed for low-volume specimens to meet the minimum volume requirement.
The Alinity m System is designed to be a random-access analyzer that can perform the Alinity m CMV assay in parallel with other Alinity m assays on the same instrument.
Alinity m CMV requires three separate assay specific kits as follows:
-
Alinity m CMV AMP Kit (List No. 09N46-095), consisting of 2 types of multi-well assay trays. The amplification trays (AMP TRAY 1) contain lyophilized, unit-dose PCR amplification/detection reagents and lyophilized, unit-dose IC in separate wells, and the activation trays (ACT TRAY 2) contain liquid unit-dose activation reagent. The intended storage condition for the Alinity m CMV AMP Kit is 2°C to 8°C.
-
Alinity m CMV CTRL Kit (List No. 09N46-085), consisting of negative controls, low positive controls, and high positive controls, each supplied as liquid in single-use tubes. The intended storage condition for the Alinity m CMV CTRL Kit is –25°C to –15°C.
Page 8
- Alinity m CMV CAL Kit (List No. 09N46-075), consisting of 2 calibrator levels, each supplied as liquid in single-use tubes. The intended storage condition for the Alinity m CMV CAL Kit is –25°C to –15°C.
CMV DNA from human plasma is extracted automatically on-board in the Alinity m System using the Alinity m Sample Prep Kit 2, Alinity m Lysis Solution, and Alinity m Diluent Solution. The Alinity m System employs magnetic microparticle technology to facilitate nucleic acid capture, wash, and elution. The resulting purified nucleic acids are then combined with liquid unit-dose Alinity m CMV activation reagent and lyophilized unit-dose Alinity m CMV amplification/detection reagents and transferred into a reaction vessel. Alinity m Vapor Barrier Solution is then added to the reaction vessel which is then transferred to an amplification/detection unit for PCR amplification, and real-time fluorescence detection of CMV targets.
At the beginning of the Alinity m CMV sample preparation process, a lyophilized unit-dose IC on the AMP Tray is rehydrated by the Alinity m System and delivered into each sample preparation reaction. The IC is then processed through the entire sample preparation and real-time PCR procedure along with the specimens, calibrators, and controls to demonstrate proper sample processing and validity.
The Alinity m CMV amplification/detection reagents consist of enzymes, primers, probes, and activation reagents that enable polymerization and detection.
A CMV calibration curve is required for determination of CMV DNA concentration. Two levels of calibrators are processed through sample preparation and PCR to generate the calibration curve. The concentration of CMV DNA in specimens and controls is then calculated from the stored calibration curve.
Assay controls are tested at or above an established minimum frequency to help ensure that instrument and reagent performance remains satisfactory. During each control event, a negative control, a low-positive control, and a high-positive control are processed through sample preparation and PCR procedures that are identical to those used for specimens.
Page 9
The Alinity m CMV assay also utilizes the following:
- Alinity m CMV Application Specification File, (List No. 09N46-05B)
- Alinity m System and System Software (List No. 08N53)
- Alinity m Sample Prep Kit 2 (List No. 09N12-001)
- Alinity m Specimen Dilution Kit I (List No. 09N50-001)
- Alinity m System Solutions, (List No. 09N20):
- Alinity m Lysis Solution (List No. 09N20-001)
- Alinity m Diluent Solution (List No. 09N20-003)
- Alinity m Vapor Barrier Solution, (List No. 09N20-004)
- Alinity m Tubes and Caps (List No. 09N49):
- Alinity m LRV Tube (List No. 09N49-001)
- Alinity m Transport Tubes Pierceable Capped (List No. 09N49-010)
- Alinity m Transport Tube (List No. 09N49-011)
- Alinity m Pierceable Cap (List No. 09N49-012)
- Alinity m Aliquot Tube (List No. 09N49-013)
Page 10
1.5 Intended Use
The Alinity m CMV assay is an in vitro polymerase chain reaction (PCR) assay for use with the automated Alinity m System to quantitate cytomegalovirus (CMV) DNA in human EDTA plasma. The Alinity m CMV assay is intended for use as an aid in the management of Hematopoietic Stem Cell Transplant and Solid Organ Transplant patients who are undergoing anti-cytomegalovirus therapy. The Alinity m CMV assay can be used to assess virological response to anti-cytomegalovirus therapy.
The results from the Alinity m CMV test must be interpreted within the context of all relevant clinical and laboratory findings. The Alinity m CMV test is not intended as a screening test for the presence of CMV DNA in blood or blood products.
1.6 Similarities and Differences to Predicate Device
The primary functional components of the Alinity m CMV assay are substantially equivalent to the current on-market Alinity m CMV assay (PMA 210022), which is a legally marketed nucleic acid amplification test (NAAT) for the quantitative detection of CMV DNA.
The Alinity m CMV assay has the same intended use as the predicate device. The subject device and predicate device differ only in the DNA polymerase that may be used in manufacture of the assay; this formulation difference does not raise new types of safety or effectiveness questions.
These devices are similar in that they are designed to prepare nucleic acids for amplification, amplify specific CMV DNA sequences, detect the amplified products, and report quantitative results.
The primary similarities and differences between the Alinity m CMV assay and the predicate device are shown in Table 1 and Table 2.
Page 11
Table 1. Similarities Between Alinity m CMV and Predicate Device
| Description | Subject Device | Predicate Device |
|---|---|---|
| Alinity m CMV | Alinity m CMV (PMA 210022) | |
| Intended Use | Same | The Alinity m CMV assay is an in vitro polymerase chain reaction (PCR) assay for use with the automated Alinity m System to quantitate cytomegalovirus (CMV) DNA in human EDTA plasma. The Alinity m CMV assay is intended for use as an aid in the management of Hematopoietic Stem Cell Transplant and Solid Organ Transplant patients who are undergoing anti-cytomegalovirus therapy. The Alinity m CMV assay can be used to assess virological response to anti-cytomegalovirus therapy.The results from the Alinity m CMV test must be interpreted within the context of all relevant clinical and laboratory findings. The Alinity m CMV test is not intended as a screening test for the presence of CMV DNA in blood or blood products. |
| Assay Type | Same | Quantitative |
| Assay Targets | Same | 2 highly conserved regions of the CMV genome (UL34 and UL80.5) |
| Specimen Types | Same | EDTA Plasma |
| Sample Preparation Procedure | Same | Automated liquid handling and robotic manipulation platform |
| Amplification Technology | Same | Real-time polymerase chain reaction |
| Assay Controls | Same | • Negative Control• Low Positive Control• High Positive Control• Internal Control (IC) |
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Table 2. Differences Between Alinity m CMV and Predicate Device
| Feature | Current Application | Predicate Device |
|---|---|---|
| Alinity m CMV | Alinity m CMV (P210022) | |
| Amplification Enzymes | Original DNA Polymerase or alternative DNA Polymerase is the enzyme used for DNA amplification. | Original DNA Polymerase is the enzyme used for DNA amplification. |
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1.7 Performance Data
The following performance data were provided in support of substantial equivalence determination of the device.
1.7.1 Specific Performance Characteristics
The subject device is similar to the predicate device originally approved (P210022) with the exception that the subject device may use a new DNA Polymerase as an alternative to original DNA Polymerase in the reagent formulation of the assay. Apart from the DNA polymerase enzyme used, the reagent formulation, including all oligonucleotide primers and probes (components and concentrations) is identical between the subject device and predicate device. There are no differences in the intended use, end-user workflow, instrument workflow, assay software, reagent manufacturing, or final product release specifications.
Additional analytical performance studies listed in Table 3 were conducted to confirm the ability of the Alinity m CMV assay formulated with alternative DNA Polymerase (subject device) to meet the performance claims established in the corresponding studies submitted in P210022 for the Alinity m CMV assay formulated with original DNA Polymerase (predicate device).
Table 3. Additional Supporting Studies (alternative formulation)
| Study Description / Performance Characteristic | 510(k) Summary Section |
|---|---|
| Limit of Detection | 1.7.1.1 |
| Linear Range | 1.7.1.2 |
| Precision | 1.7.1.3 |
| Lower Limit of Quantitation | 1.7.1.4 |
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All other specific performance characteristics of the subject device are supported by the studies submitted in P210022.
Refer to Table 4.
Table 4. Supporting Studies Submitted in P210022
| Study Description / Performance Characteristic | Reference |
|---|---|
| Traceability to the WHO Standard | Original submission |
| Genotype Limit of Detection | Original submission |
| Genotype Linearity | Original submission |
| Analytical Specificity – Potential Cross-Reactants | Original submission |
| Analytical Specificity – Potentially Interfering Substances | Original submission |
| Carryover | Original submission |
| Alinity m CMV Testing Using Dilution Procedure | Original submission |
| Precision of Alinity m CMV Using Dilution Procedure | Original submission |
| Confirmation of LLoQ Using Dilution Procedure | Original submission |
1.7.1.1 Limit of Detection
A limit of detection (LoD) study was conducted previously to support the approval of P210022. Please refer to the decision summary for P210022.
An additional study was conducted to confirm the LoD claim of Alinity m CMV (30 IU/mL) for the alternative formulation of the assay.
LoD for CMV was evaluated by testing dilutions of the 1st World Health Organization (WHO) International Standard for Human Cytomegalovirus for Nucleic Acid Amplification Techniques (NIBSC code 09/162) prepared in CMV negative human plasma. Testing for each CMV DNA concentration was performed with 3 lots of amplification reagents across multiple days.
The data from the study demonstrated that the Alinity m CMV assay formulated with alternative DNA Polymerase had an overall detection rate of 96.9% at 30 IU/mL for all reagent lots combined with a 95% Confidence Interval of (93.4%, 98.6%).
Refer to Table 5.
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Table 5. Alinity m CMV (alternative formulation) Limit of Detection (LoD) Results
| Target Concentration (IU/mL) | AMP Kit Reagent Lot | Number of Total Replicates | Number of Replicates Detected | Detection Rate (%) | 95% Score Confidence Interval (%) |
|---|---|---|---|---|---|
| 20 | 1 | 48 | 46 | 95.8 | (86.0, 98.8) |
| 2 | 48 | 48 | 100.0 | (92.6, 100.0) | |
| 3 | 48 | 45 | 93.8 | (83.2, 97.9) | |
| All Combined | 144 | 139 | 96.5 | (92.1, 98.5) | |
| 30ᵃ | 1 | 96 | 92 | 95.8 | (89.8 98.4) |
| 2 | 48 | 47 | 97.9 | (89.1, 99.6) | |
| 3 | 48 | 47 | 97.9 | (89.1, 99.6) | |
| All Combined | 192 | 186 | 96.9 | (93.4, 98.6) | |
| 50 | 1 | 48 | 48 | 100.0 | (92.6, 100.0) |
| 2 | 48 | 48 | 100.0 | (92.6, 100.0) | |
| 3 | 48 | 48 | 100.0 | (92.6, 100.0) | |
| All Combined | 144 | 144 | 100.0 | (97.4, 100.0) |
ᵃ Alinity m CMV assay limit of detection (LoD) claim
1.7.1.2 Linear Range
A linearity study was conducted previously to support the approval of P210022. Please refer to the decision summary for P210022.
An additional study was conducted to confirm that the Alinity m CMV assay formulated with alternative DNA polymerase was linear across the claimed quantitation range (30 IU/mL [1.48 Log IU/mL] to 100,000,000 IU/mL [8.00 Log IU/mL]).
Linearity was evaluated by testing 17 panel members that spanned the intended quantitation range of the assay (30 IU/mL to 100,000,000 IU/mL), including a panel member below the expected Lower Limit of Quantification (LLoQ) at 15 IU/mL and a panel member exceeding the expected Upper Limit of Quantification (ULoQ) at 200,000,000 IU/mL. Panels prepared with different specimen types were designed to have at least a 2 Log IU/mL overlap with adjacent sample types. Refer to Table 6.
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Table 6. Panel Members for Linearity
| Panel Member | Targeted CMV Concentration | Source | |
|---|---|---|---|
| IU/mL | Log IU/mL | ||
| 01 | 200,000,000 | 8.30 | Plasmid DNA |
| 02 | 10,000,000 | 7.00 | Plasmid DNA |
| 03 | 1,000,000 | 6.00 | Plasmid DNA |
| 04 | 130,000 | 5.11 | Plasmid DNA |
| 05 | 100,000 | 5.00 | Cultured Virus |
| 06 | 20,000 | 4.30 | Plasmid DNA |
| 07 | 10,000 | 4.00 | Cultured Virus |
| 08 | 2,500 | 3.40 | Clinical specimen |
| 09 | 1,000 | 3.00 | Plasmid DNA |
| 10 | 500 | 2.70 | Cultured Virus |
| 11 | 200 | 2.30 | Plasmid DNA |
| 12 | 100 | 2.00 | Clinical specimen |
| 13 | 50 | 1.70 | Cultured Virus |
| 14 | 30 | 1.48 | Clinical specimen |
| 15 | 25 | 1.40 | Plasmid DNA |
| 16 | 20 | 1.30 | Cultured Virus |
| 17 | 15 | 1.18 | Clinical specimen |
The data from the study demonstrated that the Alinity m CMV assay formulated with the alternative DNA Polymerase was linear across the quantitation range from 30 IU/mL to 100,000,000 IU/mL (1.48 Log IU/mL to 8.00 Log IU/mL). Representative results for Alinity m CMV linearity performance are shown in Figure 1.
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Figure 1. Alinity m CMV (alternative formulation) Linearity
[THIS IS FIGURE: A scatter plot showing linearity data with Expected Concentration (Log IU/mL) on x-axis (0-9) and Alinity m CMV (Log IU/mL) on y-axis (0-9). The plot shows a strong linear relationship with r = 0.999, with data points following a diagonal line from approximately (1,1) to (8,8).]
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1.7.1.3 Precision
A precision study was conducted previously to support the approval of P210022. Please refer to the decision summary for P210022.
An additional study was conducted to confirm the precision claim of Alinity m CMV (as follows) for the alternative DNA polymerase formulation of the assay:
-
Within-laboratory standard deviation (SD) of ≤ 0.25 Log IU/mL for plasma samples containing 500 IU/mL to 100,000,000 IU/mL (2.70 Log IU/mL to 8.00 Log IU/mL) CMV DNA
-
Within-laboratory SD of ≤ 0.50 Log IU/mL for plasma samples containing 50 IU/mL to < 500 IU/mL (1.70 Log IU/mL to < 2.70 Log IU/mL) CMV DNA
Precision was evaluated by testing 8 panel members with CMV concentrations ranging from 30 IU/mL to 1 × 10⁸ IU/mL (1.48 Log IU/mL to 8.00 Log IU/mL). Panel members were prepared by diluting CMV positive specimen or cultured virus in human EDTA plasma. CMV plasmid DNA was only used for panel members with high concentrations (> 5.00 Log IU/mL). The quantitation of the panel members was traceable to the 1st WHO International Standard for Human Cytomegalovirus for Nucleic Acid Amplification Techniques (NIBSC code 09/162).
Three lots of Alinity m CMV amplification reagents manufactured with the alternative DNA Polymerase were run on 1 Alinity m System by 3 operators (each of the 3 operators used 1 lot of amplification reagents). Three replicates of each panel member were run twice each day for 15 days for each lot/operator combination with a minimum separation of 2 hours between successive runs of a panel member.
The overall precision analysis summary for the Alinity m CMV assay formulated with the alternative DNA Polymerase is presented in Table 7.
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The results demonstrated that the Alinity m CMV assay has a within-laboratory SD of 0.25 Log IU/mL or less for CMV DNA panels targeted to 500 IU/mL to 100,000,000 IU/mL (2.70 Log IU/mL to 8.00 Log IU/mL) and a within-laboratory SD of 0.50 Log IU/mL or less for CMV DNA panels targeted to 50 IU/mL to < 500 IU/mL (1.70 Log IU/mL to < 2.70 Log IU/mL).
Table 7. Alinity m CMV (alternative formulation) Precision Analysis – All Reagent Lots
| Panel | N | Mean Concentration (Log IU/mL) | Within-Run Component | Between-Run Component | Between-Day Component | Within-Laboratoryᵃ | Between-Lot Component | Totalᵇ |
|---|---|---|---|---|---|---|---|---|
| SD | %CV | SD | %CV | SD | %CV | |||
| 01 | 270 | 1.52 | 0.26 | 17.2 | 0.06 | 3.7 | 0.00 | 0.0 |
| 02 | 270 | 1.70 | 0.16 | 9.6 | 0.02 | 0.9 | 0.03 | 1.5 |
| 03 | 270 | 2.13 | 0.21 | 9.8 | 0.05 | 2.4 | 0.00 | 0.0 |
| 04 | 270 | 2.83 | 0.05 | 1.8 | 0.02 | 0.9 | 0.00 | 0.0 |
| 05 | 270 | 4.04 | 0.04 | 1.0 | 0.03 | 0.7 | 0.00 | 0.0 |
| 06 | 270 | 5.03 | 0.03 | 0.7 | 0.03 | 0.5 | 0.00 | 0.0 |
| 07 | 270 | 7.19 | 0.04 | 0.5 | 0.02 | 0.3 | 0.00 | 0.0 |
| 08 | 270 | 8.15 | 0.05 | 0.6 | 0.00 | 0.0 | 0.01 | 0.1 |
ᵃ Within-Laboratory includes Within-Run, Between-Run, and Between-Day Components.
ᵇ Total includes Within-Run, Between-Run, Between-Day, and Between-Lot Components.
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The Total SD and Total %CV for each panel member in this study were compared with the Total SD and Total %CV from the original precision study submitted in P210022. Refer to Table 8.
Table 8. Equivalence Evaluation of Total SD and Total %CV (Newᵃ vs. Originalᵇ)
| Panel Member | Mean Concentration | Total SD | Total %CV | Ratios and 95% CI |
|---|---|---|---|---|
| New (Log IU/mL) | Original (Log IU/mL) | New SD | Original SD | |
| 01 | 1.52 | 1.38 | 0.27 | 0.28 |
| 02ᶜ | 1.70 | 1.64 | 0.17 | 0.19 |
| 03 | 2.13 | 1.92 | 0.22 | 0.13 |
| 04 | 2.83 | 2.65 | 0.06 | 0.11 |
| 05 | 4.04 | 3.98 | 0.05 | 0.07 |
| 06 | 5.03 | 4.99 | 0.04 | 0.08 |
| 07 | 7.19 | 6.99 | 0.05 | 0.11 |
| 08ᵈ | 8.15 | 8.35 | 0.05 | 0.13 |
ᵃ "New" Mean Concentration, Total SD, and Total %CV data for Alinity m CMV assay formulated with the alternative DNA Polymerase
ᵇ "Original" Mean Concentration, Total SD, and Total %CV data for on-market Alinity m CMV assay formulated with the original DNA Polymerase (submitted in P210022)
ᶜ The 95% CI of the ratio of the SD is within the clinical equivalence margin of 3.85.
ᵈ Panel 08 in the New precision study targeting 8.0 Log IU/mL is compared to panel 08 in the Original precision study targeting 8.3 Log IU/mL.
ᵉ Precision results were effectively equivalent if the 95% confidence interval for the ratio of SD or ratio of %CVs between the alternative DNA Polymerase ("New") and original Polymerase ("Original") contained 1.00 or the upper bound of the 95% confidence interval for the ratio of SD or ratio of %CV is < 1.00. The Precision results were clinically equivalent if the upper bound of 95% confidence interval for the ratio of SD or ratio of %CVs was less than the clinical equivalence margin. The clinical equivalence margin for each panel member was determined as the clinically acceptable SD of 0.50 divided by the within-laboratory SD from the precision study using the original DNA Polymerase ("Original"). The results satisfying these criteria were considered clinically acceptable.
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1.7.1.4 Lower Limit of Quantitation (LLoQ)
A lower limit of quantitation (LLoQ) study was conducted previously to support the approval of P210022. Please refer to the decision summary for P210022.
An additional study was conducted to confirm the LLoQ claim of Alinity m CMV (30 IU/mL) for the alternative DNA polymerase formulation of the assay.
The LLoQ is defined as the lowest concentration at which CMV DNA is reliably quantitated within an acceptable total error. Total error was estimated for detected samples from the LoD study (Section 1.7.1.1) by 2 methods:
- Total Analytical Error (TAE) = |bias| + 2 × SD, and
- Total Error (TE) = SQRT(2) × 2 × SD
The results of the calculations are shown in Table 9.
Panel members were dilutions of the 1st WHO International Standard for Human Cytomegalovirus for Nucleic Acid Amplification Techniques (NIBSC code 09/162) prepared in CMV-negative plasma.
The results of these analyses support a claimed LLoQ of 30 IU/mL (1.48 Log IU/mL), with an acceptable level of accuracy and precision (ie, TAE and TE less than or equal to 1.00 Log IU/mL).
Table 9. Alinity m CMV (alternative formulation) TAE and TE
| Target Concentration (Log IU/mL) | Mean Concentration (Log IU/mL) | Biasᵃ (Log IU/mL) | SD (Log IU/mL) | TAE (Log IU/mL) | TE (Log IU/mL) |
|---|---|---|---|---|---|
| 1.30 | 1.30 | -0.00 | 0.31 | 0.62 | 0.88 |
| 1.48 | 1.42 | -0.06 | 0.27 | 0.59 | 0.75 |
| 1.70 | 1.74 | 0.04 | 0.17 | 0.38 | 0.48 |
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1.7.1 Performance Characteristics
1.7.1.1 Reproducibility
A reproducibility study was conducted previously to support the approval of P210022. Please refer to the decision summary for P210022.
An additional study was conducted to evaluate the reproducibility of the Alinity m CMV assay formulated with the alternative DNA Polymerase.
Reproducibility performance of Alinity m CMV was evaluated by testing a 9-member reproducibility panel, which included 8 positive panel members and 1 negative panel member. The positive panel members were prepared by spiking clinical specimen, cultured virus or plasmid DNA into normal CMV negative K2EDTA plasma to achieve concentrations that spanned the analytical measuring interval of the Alinity m CMV assay.
One lot each of Alinity m CMV AMP Kit, Alinity m CMV CAL Kit, Alinity m CMV CTRL Kit, and Alinity m Sample Prep Kit 2 lots were used. Testing was performed at 3 clinical sites on 5 non-consecutive days with 2 runs per day. Four replicates of each panel member were tested on each of 5 days to ensure a minimum of 3 valid replicates for analysis.
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The reproducibility results are summarized in Table 10 (for the positive panel members) and in Table 11 (for the negative panel member).
Table 10. Alinity m CMV (alternative formulation) Reproducibility for Positive Panel Members
| Panel | N | Mean Concentration (Log IU/mL) | Within-Run Component | Between-Run Component | Between-Day Component | Within-Laboratoryᵃ | Between-Site Component | Totalᵇ |
|---|---|---|---|---|---|---|---|---|
| SD | %CV | SD | %CV | SD | %CV | |||
| 1 | 117 | 7.87 | 0.05 | 0.7 | 0.02 | 0.3 | 0.00 | 0.0 |
| 2 | 117 | 6.85 | 0.05 | 0.7 | 0.01 | 0.2 | 0.01 | 0.2 |
| 3 | 119 | 5.11 | 0.05 | 1.0 | 0.00 | 0.0 | 0.01 | 0.3 |
| 4 | 119 | 4.03 | 0.04 | 1.0 | 0.02 | 0.4 | 0.00 | 0.1 |
| 5 | 117 | 3.09 | 0.06 | 1.9 | 0.02 | 0.7 | 0.01 | 0.2 |
| 6 | 118 | 1.87 | 0.16 | 8.5 | 0.03 | 1.7 | 0.00 | 0.0 |
| 7 | 116 | 1.44 | 0.25 | 17.4 | 0.11 | 7.5 | 0.00 | 0.0 |
| 8 | 111 | 1.20 | 0.32 | 26.6 | 0.10 | 8.2 | 0.00 | 0.0 |
ᵃ Within-Laboratory includes Within-Run, Between-Run, and Between-Day Variance Components.
ᵇ Total (Overall) includes Within-Run, Between-Run, Between-Day, and Between-Site Variance Components.
Table 11. Alinity m CMV (alternative formulation) Reproducibility for Negative Panel Member
| Panel | Site | N | Negative Agreement Rate | 95% CI | ||
|---|---|---|---|---|---|---|
| Total | Positive | Negative | ||||
| 9 | All | 119 | 0 | 119 | 100.0% | (96.9%, 100.0%) |
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The Total SD and Total %CV for each panel member in this study were compared with the Total SD and Total %CV from the original reproducibility study submitted in P210022. Refer to Table 12.
Table 12. Equivalence Evaluation of Total SD and Total %CV (Newᵃ vs. Originalᵇ)
| Panel | Mean Concentration | Total SD | Total %CV | Ratios and 95% CI | Clinically acceptable? |
|---|---|---|---|---|---|
| New (Log IU/mL) | Original (Log IU/mL) | New SD | Original SD | New %CV | |
| 1 | 7.87 | 8.18 | 0.11 | 0.17 | 1.4 |
| 2 | 6.85 | 7.00 | 0.08 | 0.13 | 1.2 |
| 3 | 5.11 | 4.75 | 0.06 | 0.15 | 1.2 |
| 4 | 4.03 | 4.06 | 0.06 | 0.13 | 1.5 |
| 5 | 3.09 | 3.08 | 0.08 | 0.13 | 2.7 |
| 6 | 1.87 | 2.04 | 0.19 | 0.19 | 10.0 |
| 7 | 1.44 | 1.40 | 0.30 | 0.37 | 20.9 |
| 8 | 1.20 | 1.24 | 0.38 | 0.36 | 31.4 |
ᵃ "New" Mean Concentration, Total SD, and Total %CV data for Alinity m CMV assay formulated with the alternative DNA Polymerase
ᵇ "Original" Mean Concentration, Total SD, and Total %CV data for on-market Alinity m CMV assay formulated with original DNA Polymerase (submitted in P210022)
1.7.1.2 Method Comparison
A method comparison study was conducted with the Alinity m CMV assay formulated with the alternative DNA Polymerase to demonstrate equivalence to the FDA-approved (on-market) Alinity m CMV assay formulated with the original DNA Polymerase (P210022).
Regression and bias analysis included a total of 141 samples with results that were within the common quantitation range of both the Alinity m CMV assay formulated with the alternative DNA polymerase (Alinity m CMV IUO) and the comparator assay (on-market Alinity m CMV). Figure 2 shows the results of the Deming regression analysis with a slope of 1.01, an intercept of 0.01, and a correlation coefficient of 0.983.
The mean bias between Alinity m CMV IUO and the comparator (Alinity m CMV IUO minus comparator) was 0.05 Log IU/mL with a 95% Confidence Interval of (0.03, 0.08).
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Figure 2. Deming Regression Analysis
y = 1.01x + 0.01
r = 0.983
n = 141
[THIS IS FIGURE: A scatter plot showing Deming regression analysis with Alinity m CMV IUO Quantitation (Log IU/mL) on y-axis (1-8) and On-market Alinity m CMV Quantitation (Log IU/mL) on x-axis (1-8). The plot shows a strong linear correlation with data points closely following the regression line.]
The Systematic difference between Alinity m CMV assay formulated with the alternative and the original DNA polymerase at 3 selected viral load levels is shown in Table 13.
Table 13. Systematic Difference at Selected Viral Load Levels
| Target Viral Load Level (per comparator) (Log IU/mL) | Systematic Difference (Log IU/mL) | 95% CI (Log IU/mL) |
|---|---|---|
| 2.70 | 0.04 | (-0.01, 0.09) |
| 3.30 | 0.05 | (0.01, 0.08) |
| 4.00 | 0.05 | (0.03, 0.08) |
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1.8 Conclusions Drawn from the Studies
The additional analytical and clinical study results demonstrate that the Alinity m CMV assay formulated with the alternative DNA Polymerase performs comparably to the FDA approved Alinity m CMV assay formulated with original DNA Polymerase.
The results support a substantial equivalence decision for Alinity m CMV formulated with the alternative DNA Polymerase.
§ 866.3180 Quantitative cytomegalovirus nucleic acid tests for transplant patient management.
(a)
Identification. A quantitative cytomegalovirus (CMV) nucleic acid test for transplant patient management is identified as a device intended for prescription use in the detection of CMV and as an aid in the management of transplant patients to measure CMV deoxyribonucleic acid (DNA) levels in human plasma and/or whole blood using specified specimen processing, amplification, and detection instrumentation. The test is intended for use as an aid in the management of transplant patients with active CMV infection or at risk for developing CMV infection. The test results are intended to be interpreted by qualified healthcare professionals in conjunction with other relevant clinical and laboratory findings.(b)
Classification. Class II (special controls). The special controls for this device are:(1) The labeling required under § 809.10(b) of this chapter must include:
(i) A prominent statement that the device is not intended for use as a donor screening test for the presence of CMV DNA in blood or blood products.
(ii) Limitations, which must be updated to reflect current clinical practice. The limitations must include, but are not limited to, statements that indicate:
(A) Test results are to be interpreted by qualified licensed healthcare professionals in conjunction with clinical signs and symptoms and other relevant laboratory results;
(B) Negative test results do not preclude CMV infection or tissue invasive CMV disease, and that CMV test results must not be the sole basis for patient management decisions.
(iii) A detailed explanation of the interpretation of results and acceptance criteria must be provided and include specific warnings regarding the potential for variability in CMV viral load measurement when samples are measured by different devices. Warnings must include the following statement, where applicable: “Due to the potential for variability in CMV viral load measurements across different CMV assays, it is recommended that the same device be used for the quantitation of CMV viral load when managing CMV infection in individual patients.”
(iv) A detailed explanation of the principles of operation and procedures for assay performance.
(2) Design verification and validation must include the following:
(i) Detailed documentation of the device description, including all parts that make up the device, reagents required for use with the CMV assay but not provided, an explanation of the methodology, design of the primer/probe sequences, rationale for the selected gene target, and specifications for amplicon size, guanine-cytosine content, and degree of nucleic acid sequence conservation. The design and nature of all primary, secondary, and tertiary quantitation standards used for calibration must also be described.
(ii) A detailed description of the impact of any software, including software applications and hardware-based devices that incorporate software, on the device's function.
(iii) Documentation and characterization of all critical reagents (
e.g., determination of the identity, supplier, purity, and stability) and protocols for maintaining product integrity throughout its labeled shelf life.(iv) Stability data for reagents provided with the device and indicated specimen types, in addition to the basis for the stability acceptance criteria at all time points chosen across the spectrum of the device's indicated life cycle, which must include a time point at the end of shelf life.
(v) All stability protocols, including acceptance criteria.
(vi) Final lot release criteria, along with documentation of an appropriate justification that lots released at the extremes of the specifications will meet the claimed analytical and clinical performance characteristics as well as the stability claims.
(vii) Risk analysis and documentation demonstrating how risk control measures are implemented to address device system hazards, such as Failure Modes Effects Analysis and/or Hazard Analysis. This documentation must include a detailed description of a protocol (including all procedures and methods) for the continuous monitoring, identification, and handling of genetic mutations and/or novel CMV stains (
e.g., regular review of published literature and annual in silico analysis of target sequences to detect possible primer or probe mismatches). All results of this protocol, including any findings, must be documented.(viii) Analytical performance testing that includes:
(A) Detailed documentation of the following analytical performance studies: Limit of detection, upper and lower limits of quantitation, inclusivity, precision, reproducibility, interference, cross reactivity, carryover, quality control, specimen stability studies, and additional studies as applicable to specimen type and intended use for the device.
(B) Identification of the CMV strains selected for use in analytical studies, which must be representative of clinically relevant circulating strains.
(C) Inclusivity study results obtained with a variety of CMV genotypes as applicable to the specific assay target and supplemented by in silico analysis.
(D) Reproducibility studies that include the testing of three independent production lots.
(E) Documentation of calibration to a standardized reference material that FDA has determined is appropriate for the quantification of CMV DNA (
e.g., a recognized consensus standard).(F) Documentation of traceability performed each time a new lot of the standardized reference material to which the device is traceable is released, or when the field transitions to a new standardized reference material.
(ix) Clinical performance testing that includes:
(A) Detailed documentation of device performance data from either a method comparison study with a comparator that FDA has determined is appropriate, or results from a prospective clinical study demonstrating clinical validity of the device.
(B) Data from patient samples, with an acceptable number of the CMV positive samples containing an analyte concentration near the lower limit of quantitation and any clinically relevant decision points.
(C) The method comparison study must include predefined maximum acceptable differences between the test and comparator method across all primary outcome measures in the clinical study protocol.
(D) The final release test results for each lot used in the clinical study.