K Number
K170557
Device Name
GenePOC GBS LB
Manufacturer
Date Cleared
2017-05-25

(90 days)

Product Code
Regulation Number
866.3740
Reference & Predicate Devices
N/A
Predicate For
AI/MLSaMDIVD (In Vitro Diagnostic)TherapeuticDiagnosticis PCCP AuthorizedThirdpartyExpeditedreview
Intended Use

The GenePOC™ GBS LB assay performed on the revogene™ instrument is a qualitative in vitro diagnostic test designed to detect Group B Streptococus (GBS) DNA from 18-24 hour LIM broth enrichments of vaginal/rectal specimen swabs obtained from pregnant women. The GenePOC GBS LB assay utilizes automated sample processing and real-time polymerase chain reaction (PCR) to detect a cfb gene sequence specific to the Streptococcus agalactiae genome.

The GenePOC GBS LB assay is indicated for the identification of antepartum GBS colonization and does not provide susceptibility results. It is not intended to diagnose or monitor treatment of GBS infection. Culture isolates are needed for performing susceptibility testing as recommended for penicillin-allergic women.

Device Description

The GenePOC GBS LB assay is a single-use test for the qualitative detection of Group B Streptococcus (GBS) DNA from enriched vaginal/rectal swab specimens using realtime Polymerase Chain Reaction (PCR) technology with fluorogenic detection of the amplified DNA. The GenePOC GBS LB assay utilizes the GBS LB microfluidic cartridge for the simultaneous detection of the target GBS DNA and the internal process control (PrC) DNA (to monitor processing, amplification, and the absence of reaction inhibitors). The GenePOC GBS LB assay is an automated assay performed on the revogene™ including sample processing.

The GenePOC Group B Strep (GBS) LB is composed of a GBS specific disposable microfluidic cartridges, Sample Buffer Tube (SBT) and Disposable Transfer Tool (DTT). These components are used to lyse and dilute the sample, amplify, and detect GBS nucleic acid from vaginal/rectal swabs following LIM broth enrichment. User intervention is required for sample preparation, discharging the LIM broth enriched sample into the SBT, transferring the sample into the cartridge and loading/unloading the cartridge into the revogene instrument. Once the sample is added into the cartridge, the process is then fully automated.

Each GenePOC GBS LB Test kit contains 24 individual pouches, and each pouch has components for 1 test including 1 cartridge, 1 SBT, and 1 DTT. The GBS LB Test is run on the revogene instrument which can process from one up to a maximum of 8 samples simultaneously in the same run. On completion of a run, the results are interpolated by the revogene™ from measured fluorescent signals and embedded calculation algorithms. For the GBS application, two spectral signals are processed: GBS target and Internal Process Control. The output results include positive, negative, indeterminate, and unresolved. On completion of a run, the user removes the used cartridges and disposes of them in normal biological waste. Results may be viewed, printed, transferred, and/or stored by the user.

AI/ML Overview

The provided document describes the GenePOC GBS LB assay, a qualitative in vitro diagnostic test for detecting Group B Streptococcus (GBS) DNA. Here's a breakdown of the acceptance criteria and the study proving the device meets them:

1. A table of acceptance criteria and the reported device performance:

The document doesn't explicitly state "acceptance criteria" in a separate table. However, it presents performance metrics that serve as the basis for FDA's substantial equivalence determination. We can infer the "acceptance criteria" from the reported performance results, particularly from the overall clinical performance.

Performance MetricAcceptance Criteria (Inferred)Reported Device Performance
Clinical Performance (Overall):
SensitivityHigh (e.g., above 90%)95.9% (95%CI: 91.7 - 98.0 %)
SpecificityHigh (e.g., above 90%)95.5% (95%CI: 93.5 - 96.9 %)
Analytical Performance:
Precision/Reproducibility (Overall Agreement for Low Positive)High (e.g., >95%)98.9%
Precision/Reproducibility (Overall Agreement for Moderate Positive)High (e.g., >95%)98.5%
Precision/Reproducibility (Overall Agreement for True Negative)100%100%
Limit of Detection (LoD)Low concentration for positive detection200 to 375 CFU/mL of SB
Analytical Inclusivity100% detection of tested GBS strains at specified concentrationsAll strains detected at concentrations ranging from 1x to 15x LoD
Analytical Specificity (Cross Reactivity)0% reactivity with non-specific analytes0% reactivity with 75 non-specific analytes
Interference (Non-Target Organisms)Minimal to no interference26 out of 29 microorganisms showed no interference; 3 showed interference at >10^4 CFU/mL
Interference (Exogenous/Endogenous Substances)Minimal to no interferenceNo reportable interference on PrC; 3 substances in combination showed potential inhibitory effect on GBS detection
Carryover and Cross ContaminationNo false positivesNo false positive results in 80 within-run and 80 between-run samples

2. Sample size used for the test set and the data provenance:

  • Clinical Test Set Sample Size: A total of 771 compliant specimen results were used to determine the clinical performance.
    • 170 GBS positive samples
    • 601 GBS negative samples
  • Data Provenance: The data was obtained from a prospective multicenter trial conducted at 4 geographically diverse clinical trial sites, consisting of two Canadian and two US clinical sites.

3. Number of experts used to establish the ground truth for the test set and the qualifications of those experts:

The document describes the ground truth for the clinical study as a "composite reference method consisting of LIM Broth enrichment of the vaginal/rectal swab followed by a subculture on blood agar plate and biochemical identification of GBS." This method is a laboratory-based standard and does not involve a subjective assessment by a human expert (like a radiologist reviewing an image). Therefore, the concept of "number of experts used to establish ground truth" with specific qualifications is not applicable in this context.

4. Adjudication method (e.g. 2+1, 3+1, none) for the test set:

Since the ground truth is established by a laboratory-based composite reference method (culture and biochemical identification), no human expert adjudication method (like 2+1 or 3+1 for imaging studies) was performed or needed for the ground truth establishment. The results are based on objective laboratory testing.

5. If a multi reader multi case (MRMC) comparative effectiveness study was done, If so, what was the effect size of how much human readers improve with AI vs without AI assistance:

No MRMC comparative effectiveness study was done. This device is a standalone in vitro diagnostic (IVD) assay designed for direct detection of GBS DNA, not an AI-assisted imaging analysis tool. Therefore, the concept of human readers improving with AI assistance is not applicable.

6. If a standalone (i.e. algorithm only without human-in-the-loop performance) was done:

Yes, a standalone performance evaluation was done. The entire performance characterization (analytical and clinical) presented in the document assesses the GenePOC GBS LB assay as a standalone device without human-in-the-loop performance modification. The revogene™ instrument processes the sample and provides the result based on its embedded calculation algorithms. User intervention is limited to sample preparation and loading/unloading.

7. The type of ground truth used (expert consensus, pathology, outcomes data, etc.):

The ground truth used for the clinical study was a laboratory-based composite reference method, specifically:

  • LIM Broth enrichment of the vaginal/rectal swab
  • Followed by subculture on blood agar plate
  • And biochemical identification of GBS

8. The sample size for the training set:

The document does not specify a separate training set size. As this is an in vitro diagnostic device for molecular detection, the "training" aspect is typically related to the development and optimization of the assay itself (e.g., primer design, probe chemistry, algorithmic thresholds) rather than training a machine learning model on a distinct dataset with labeled ground truth in the same way an AI imaging algorithm would be trained. The performance data presented refers to the testing of the developed and finalized assay.

9. How the ground truth for the training set was established:

Since a distinct "training set" with ground truth (in the AI/ML sense) is not described, the question of how its ground truth was established is not directly applicable. However, the development of the assay itself would have relied on well-characterized GBS strains and clinical samples with known GBS status, likely determined through standard microbiological culture and identification methods (similar to the clinical ground truth). This iterative development-and-testing process leads to the final assay's performance characteristics.

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Image /page/0/Picture/1 description: The image shows the logo for the U.S. Department of Health and Human Services. The logo consists of a circular seal with the words "DEPARTMENT OF HEALTH & HUMAN SERVICES - USA" arranged around the perimeter. Inside the circle is a stylized image of three human profiles facing right, with a design above them that resembles wings or feathers.

Food and Drug Administration 10903 New Hampshire Avenue Document Control Center - WO66-G609 Silver Spring, MD 20993-0002

May 25, 2017

GENEPOC INC. GUY SEVIGNY SENIOR REGULATORY AFFAIRS SPECIALIST 360 RUE FRANQUET QUEBEC G1P 4N3 CA

Re: K170557 Trade/Device Name: GenePOC GBS LB Regulation Number: 21 CFR 866.3740 Regulation Name: Streptococcus spp. serological reagents Regulatory Class: I Product Code: NJR, OOI Dated: February 23, 2017 Received: February 24, 2017

Dear Mr. Sevigny:

We have reviewed your Section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration. Please note: CDRH does not evaluate information related to contract liability warranties. We remind you, however, that device labeling must be truthful and not misleading.

If your device is classified (see above) into either class II (Special Controls) or class III (PMA), it may be subject to additional controls. Existing major regulations affecting your device can be found in the Code of Federal Regulations, Title 21, Parts 800 to 898. In addition, FDA may publish further announcements concerning your device in the Federal Register.

Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Parts 801 and 809); medical device reporting (reporting of medical device-related adverse events) (21 CFR 803); good manufacturing practice requirements as set forth in the quality systems (OS) regulation (21 CFR Part 820); and if applicable, the electronic product radiation control provisions (Sections 531-542 of the Act); 21 CFR 1000-1050.

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If you desire specific advice for your device on our labeling regulations (21 CFR Parts 801 and 809), please contact the Division of Industry and Consumer Education at its toll-free number (800) 638 2041 or (301) 796-7100 or at its Internet address

http://www.fda.gov/MedicalDevices/Resourcesfor You/Industry/default.htm. Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21 CFR Part 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to

http://www.fda.gov/MedicalDevices/Safety/ReportaProblem/default.htm for the CDRH's Office of Surveillance and Biometrics/Division of Postmarket Surveillance.

You may obtain other general information on your responsibilities under the Act from the Division of Industry and Consumer Education at its toll-free number (800) 638-2041 or (301) 796-7100 or at its Internet address

http://www.fda.gov/MedicalDevices/ResourcesforYou/Industry/default.htm.

Sincerely yours,

Ribhi Shawar -S
For

Uwe Scherf, M.Sc., Ph.D. Director Division of Microbiology Devices Office of In Vitro Diagnostics and Radiological Health Center for Devices and Radiological Health

Enclosure

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Indications for Use

510(k) Number (if known) K170557

Device Name GenePOC GBS LB

Indications for Use (Describe)

The GenePOC™ GBS LB assay performed on the revogene™ instrument is a qualitative in vitro diagnostic test designed to detect Group B Streptococus (GBS) DNA from 18-24 hour LIM broth enrichments of vaginal/rectal specimen swabs obtained from pregnant women. The GenePOC GBS LB assay utilizes automated sample processing and real-time polymerase chain reaction (PCR) to detect a cfb gene sequence specific to the Streptococcus agalactiae genome.

The GenePOC GBS LB assay is indicated for the identification of antepartum GBS colonization and does not provide susceptibility results. It is not intended to diagnose or monitor treatment of GBS infection. Culture isolates are needed for performing susceptibility testing as recommended for penicillin-allergic women.

Type of Use (Select one or both, as applicable)
☑ Prescription Use (Part 21 CFR 801 Subpart D) ☐ Over-The-Counter Use (21 CFR 801 Subpart C)

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510K SUMMARY

A. GENERAL INFORMATION

Submission Date:February 23, 2017
-------------------------------------

Submitter Information:

Submitted By:GenePOC Inc.360 rue Franquet, Suite 100 Porte 3Québec (Québec) G1P 4N3
Contact Person:Guy SevignySr. Regulatory Affairs SpecialistGenePOC Inc.
Telephone: +1 418 650-3535 ext. 261Fax:
Email: guy.sevigny@genepoc.ca

B. PURPOSE FOR SUBMISSION:

To obtain a substantial equivalence determination for the GenePOC Group B Step (GBS) LB test

C. MEASURAND:

cfb gene of Streptococcus agalactiae (Group B Streptococcus, GBS)

D. TYPE OF TEST:

Real-time Polymerase chain reaction (rtPCR)

E. DEVICE INFORMATION:

    1. Trade Name: GenePOC GBS LB
    1. Regulation: 21 CFR 866.3740 - Streptococcal spp. serological reagents
    1. Classification: Class I
    1. Product Code: NJR - Nucleic Acid Amplification Assay System, Group B Streptococcus, Direct Specimen

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OOI - Real-time nucleic acid amplification

    1. Panel: 83, Microbiology

F. INTENDED USE:

    1. Intended Use and Indications for Use:
      The GenePOC™ GBS LB assay performed on the revogene™ instrument is a qualitative in vitro diagnostic test designed to detect Group B Streptococcus (GBS) DNA from 18-24 hour LIM broth enrichments of vaginal/rectal specimen swabs obtained from pregnant women. The GenePOC GBS LB assay utilizes automated sample processing and real-time polymerase chain reaction (PCR) to detect a cfb gene sequence specific to the Streptococcus agalactiae genome.

The GenePOC GBS LB assay is indicated for the identification of antepartum GBS colonization and does not provide susceptibility results. It is not intended to diagnose or monitor treatment of GBS infection. Culture isolates are needed for performing susceptibility testing as recommended for penicillin-allergic women.

    1. Special conditions for use statement(s): Prescription Use Only
    1. Special instrument requirements: revogene™

G. DEVICE DESCRIPTION:

The GenePOC GBS LB assay is a single-use test for the qualitative detection of Group B Streptococcus (GBS) DNA from enriched vaginal/rectal swab specimens using realtime Polymerase Chain Reaction (PCR) technology with fluorogenic detection of the amplified DNA. The GenePOC GBS LB assay utilizes the GBS LB microfluidic cartridge for the simultaneous detection of the target GBS DNA and the internal process control (PrC) DNA (to monitor processing, amplification, and the absence of reaction inhibitors). The GenePOC GBS LB assay is an automated assay performed on the revogene™ including sample processing.

The GenePOC Group B Strep (GBS) LB is composed of a GBS specific disposable microfluidic cartridges, Sample Buffer Tube (SBT) and Disposable Transfer Tool (DTT). These components are used to lyse and dilute the sample, amplify, and detect GBS nucleic acid from vaginal/rectal swabs following LIM broth enrichment. User intervention is required for sample preparation, discharging the LIM broth enriched sample into the SBT, transferring the sample into the cartridge and loading/unloading the cartridge into the revogene instrument. Once the sample is added into the cartridge, the process is then fully automated.

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Each GenePOC GBS LB Test kit contains 24 individual pouches, and each pouch has components for 1 test including 1 cartridge, 1 SBT, and 1 DTT. The GBS LB Test is run on the revogene instrument which can process from one up to a maximum of 8 samples simultaneously in the same run. On completion of a run, the results are interpolated by the revogene™ from measured fluorescent signals and embedded calculation algorithms. For the GBS application, two spectral signals are processed: GBS target and Internal Process Control. The output results include positive, negative, indeterminate, and unresolved. On completion of a run, the user removes the used cartridges and disposes of them in normal biological waste. Results may be viewed, printed, transferred, and/or stored by the user.

H. SUBSTANTIAL EQUIVALENCE INFORMATION:

    1. Predicate Device Name: BD MAX™ GBS Assay
    1. Predicate 510(k) Number: K11860
    1. Comparison with Predicate:
ItemGenePOC GBS LB(Subject Device)BD MAX GBS Assay(Predicate Device)
K NumberK170557K111860
SIMILARITIES
ClassificationClass ISame
Intended UseIntended Use for detection of GBSSame
Specimen typeVaginal-Rectal Swab (Enriched Lim Broth)Same
Collection andTransport MediaLiquid Amies or StuartSame
Sample PreparationMethodManual; swab enriched overnight in Lim BrothSame
DNA ExtractionAutomated by instrumentSame
Assay Format• Amplification: Real Time PCR• Detection: FluorogenicSame
Automatic AssayYes-result interpretationSame
Internal ProcessControlExtraction and PCR internal control is a process monitorSame
External ControlMaterials available commercially but not required to run the testSame
DIFFERENCES
DNA Target190 bp region of the cfb gene124 bp region of cfb gene
Probe DesignTaqMan®Scorpion

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ItemGenePOC GBS LB(Subject Device)BD MAX GBS Assay(Predicate Device)
GBS AssayFormatFully integrated sample processingand PCR reaction/detection in acartridgeRequires combination of areagent strip and a PCRcartridge
Single UseCartridge can be used onceCartridge can be used twice
Time to Result~70 min2-3 hours
Instrument OpticalChannelsrevogene™ contains 4 channelsBD MAX Instrumentcontains 6 optical channels

I. STANDARDS/GUIDANCE DOCUMENTS REFERENCED:

  • CLSI Guideline EP25-A, Evaluation of Stability of In Vitro Diagnostic Reagents; . Approved Guideline.

J. TEST PRINICIPLE:

Vaginal-rectal specimen are collected and used to inoculate selective LIM broth. After incubation at 35-37℃ for 18-24 hours in ambient, 15 µL of the inoculated broth is transferred to the Sample Buffer Tube (SBT). After vortexing the SBT for 15 seconds, approximately 150 µL of the inoculated sample buffer is transferred into the GenePOC microfluidic cartridge using the Disposable Transfer Tool (DTT). The loaded GBS LB cartridge is placed into the revogene for further sample processing. No operator intervention is necessary once the clinical sample is loaded onto the revogene.

Each GBS LB microfluidic cartridge is a completely integrated and self-contained device. Each sample is transferred by centrifugation from one microfluidic chamber to the next in sequence, and all reagents specific for the PCR reaction are incorporated and dried within the PCR wells. The stepwise process includes sample homogenization, lysis of cells, and specimen dilution followed by the subsequent real-time PCR steps within 1 PCR well in the cartridge. An internal Process Control (PrC) is contained in the homogenization chamber and is therefore present in every test to monitor critical steps of the analytical process (including sample lysis, dilution and nucleic acid amplification and detection) for the presence of potential inhibitory substances as well as system or reagent failures. The amplified products are detected in real time using target-specific TaqMan® chemistry-based probes. The GBS LB specific designed primers and probe detect a target region of 190 base pairs of the cfb gene specific to the Streptococcus agalactiae genome. The results are interpolated by the revogene from measured fluorescent signals and embedded calculation algorithms.

K. PERFORMANCE CHARACTERISTICS:

1. Analytical Performance

a. Precision/Reproducibility

The reproducibility study was conducted at three sites (two external sites and GenePOC laboratories) to evaluate the within-run, between-run (three runs per

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day) and between-day (five days, consecutive or not) reproducibility and variance with multiple operators (n=6; two operators per site). Precision was evaluated based on the within-site variability over 5 days. Three revogene instruments (one per site) and a single lot of the GenePOC GBS LB assay were used by each site (total of three reagent lots).

Three GBS strains were tested at two different concentrations in each run: low positive (LP; 735 CFU/mL SB) and moderate positive (MP; 1,125 CFU/mL SB). The GBS strains used in the panels were the hemolytic serotype Ia S. agalactiae strain ATCC 12400, the hemolytic serotype III S. agalactiae strain ATCC 12403 and the non-hemolytic S. agalactiae strain ATCC 13813. Two true negative (TN) samples were included in each run.

After the testing of 720 replicates (270 low positive, 270 moderate positive, and 180 true negative samples) with the GenePOC GBS LB assay, the overall analysis showed 100% agreement for negative samples, 98.9% agreement for low positive samples, and 98.5% agreement for moderate positive samples as summarized in the table below.

SampleStrainSite 1Site 2Site 3OverallAssayResults/Total% Agreement
Assay Results/Total
Low Positive(735 CFU/mL ofSB)ATCC 1381329/3030/3030/3089/9098.9%
ATCC 1240328/3030/3030/3088/9097.8%
ATCC 1240030/3030/3030/3090/90100%
OverallResults/Total(% Agreement)87/90(96.7%)90/90(100%)90/90(100%)267/27098.9%
Moderate Positive(1,125 CFU/mL ofSB)ATCC 1381328/3029/3030/3087/9096.7%
ATCC 1240329/3030/3030/3089/9098.9%
ATCC 1240030/3030/3030/3090/90100%
OverallResults/Total(% Agreement)87/90(96.7%)89/90(98.9%)90/90(100%)266/27098.5%
True NegativeNAOverallResults/Total(% Agreement)60/60(100%)60/60(100%)60/60(100%)180/180100%

Summary of the Percent Agreement Analysis across all Sites

The quantitative results for the between strain, between-site, between-operator and between-day reproducibility for Ct values are summarized below:

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GBS Ct; Low Positive (735 CFU/mL)
Variance componentN*Variance%MeanSDrSD(%CV)
Residual2.5768.5%1.64.4%
Strain0.328.5%0.61.6%
Site2670.7319.4%36.40.92.3%
Operator (Site)0.143.6%0.41.0%
Day (Site x Op)0.000.0%0.00.0%
All components1.1831.5%1.13.0%
GBS Ct; Moderate Positive (1,125 CFU/mL)
Variance componentN*Variance%MeanSDrSD(%CV)
Residual2.3372.4%1.54.3%
Strain0.113.6%0.31.0%
Site2660.6520.1%35.70.82.3%
Operator (Site)0.113.4%0.30.9%
Day (Site x Op)0.020.5%0.10.4%
All components0.8927.6%0.92.6%
PrC Ct; All specimens
Variance componentN*Variance%MeanSDrSD(%CV)
Residual1.2265.8%1.13.5%
Strain/NEG0.010.7%0.10.4%
Site0.5629.9%31.90.72.3%
Operator (Site)7180.052.5%0.20.7%
Day (Site x Op)0.021.1%0.10.4%
All components0.6434.2%0.82.5%

Summary of the Overall SD and % CV for the Ct values for the Reproducibility Study

Ct GBSInter-siteInter-operatorInter-dayOverall
LoadStrainNMean CtSD% CVSD% CVSD% CVSD% CV
ATCC 138138936.42.67.12.46.63.910.65.214.4
Low Positive (1-2xLoD)ATCC 124038836.93.28.52.77.34.311.55.916.1
ATCC 124009035.82.67.42.26.23.810.55.114.3
Overall Low Positive26736.42.98.02.67.04.111.25.615.5
ATCC 1381387ਤੇ 'ਚ2.57.12.57.04.011.25.415.0
Moderate Positive (3xLoD)ATCC 124038935.92.87.82.46.73.910.75.314.9
ATCC 124009035.32.77.62.26.43.710.45.114.4
Overall Moderate Positive26635.72.77.62.46.83.910.85.314.9
Ct PrCInter-siteInter-operatorInter-dayOverall
LoadStrainNMeanSD% CVSD% CVSD% CVSD% CV
True NegativeN/A18031.91.75:51.85.72.99.23.912.1

A summary of the SD and % CV for the Ct values for the quantitative withinsite analysis are presented below.

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Site 1Site 2Site 3
Mean Ct, SD and %CV GBS
Target LoadStrainNMeanSD% CVNMeanSD% CVNMeanSD% CV
True NegativeNANANANANANANANANANANANANA
Low Positive (735ATCC 13813ਨਰ37.61.84.93036.31.02.83035.41.54.3
CFU/mL)ATCC 124032837.72.46.43037.01.64.33036.11.33.5
ATCC 124003036.71.64.43035.41.54.13035.21.54.2
Overall (Low positive sample only)Result/expected result8737.32.05.49036.31.54.29035.51.54.1
ATCC 138132837.21.95.22936.01.13.23034.71.23.3
Moderate Positive (1125ATCC 124032936.62.15.73035.91:54.13035.21.23.4
CFU/mL)ATCC 124003036.01.23.53035.11.33.63034.72.05.8
Overall (Moderate positive sample only)Result/expected result8736.61.85.08935.71.43.89034.91.54.3
Mean Ct, SD and %CV PrC
Target LoadStrainNMeanSD% CVNMeanSD% CVNMeanSD% CV
True NegativeNA6032.11.23.76032.70.73.26030.81.12.4
Low Positive (735ATCC 138133032.51.03.03032.40.92.63031.21.03.1
CFU/mL)ATCC 124033032.52.26.93032.20.92.73031.21.65.0
ATCC 124003032.41.54.73031.90.92.83031.10.72.4
Overall (Low positive sample only)Result/expected result9032.51.65.19032.20.92.79031.21.13.7
ATCC 138133032.71.23.83032.91.23.53031.00.93.1
Moderate Positive (1125CFU/mL)ATCC 124033031.60.92.93032.51.13.53030.80.82.6
ATCC 124002932.10.82.53032.10.82.42931.31.03.3
Overall (Moderate positive sample only)Result/expected result8932.11.13.49032.51.13.38931.00.93.0

Summary of the SD and % CV for the Ct values for the Within-Site Precision Study

b. Linearity/Assay Reportable Range

Not applicable. The GenePOC GBS LB Test is a qualitative assay.

  • c. Traceability, Stability, Expected Values (controls, calibrators, or methods) Commercial control material (e.g. Streptococcus agalactiae ATCC® 13813) can be used as a Positive External Control. It is recommended that bacterial strains be freshly prepared in LIM broth. Transfer a 15 uL aliquot of a 18-24 hours culture in LIM broth into a SBT. Pure LIM broth is recommended for use as a Negative External Control.
    An Internal Process Control (PrC) is provided in each GenePOC GBS LB test. The PrC is extracted, amplified, and detected along with each specimen tested and monitors the efficacy of the cell lysis, dilution and PCR amplification and detection processes.

d. Detection Limit

The analytical sensitivity (Limit of Detection or LoD) of the GBS LB assay was determined using clinical LIM broth matrix previously tested negative for GBS and spiked with different concentrations of GBS bacterial suspensions. Two

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strains of GBS (ATCC 12403 and ATCC 13813) were tested in 24 replicates per concentration by 2 operators using 3 different lots of GBS LB kits. The LoD is defined as the lowest concentration at which 95% of all replicates tested positive. The LoD of the GBS LB assay ranged from 200 to 375 CFU/mL of SB (200 CFU/mL for ATCC 13813 and 375 CFU/mL for ATCC 12403).

e. Analytical Inclusivity

The analytical reactivity was determined with 12 strains of S. agalactive representing 11 known serotypes and one non-haemolytic strain. Each strain was tested in 8 replicates per dilution per lot of material. All strains were detected at concentrations ranging from 1x to 15x LoD.

Strain¹SerotypeConcentration at which replicates are 100% positiveCFU/mL of SB
ATCC 12400Ia735
ATCC 51487Ib5,625
ATCC 27591Ic1,875
ATCC 12973II735
ATCC 12403III375
ATCC 49446IV2,625
ATCC BAA-611V1,875
ATCC BAA-2671VI1,125
ATCC BAA-2670VII2,625
ATCC BAA-2669VIII3,750
ATCC BAA-2668IX1,125
ATCC 13813Non-hemolytic500

f. Analytical Specificity

Cross Reactivity:

A total of 75 non-specific analytes were tested in this study and listed in the table below. The various analytes selected are found in clinical vaginal-rectal specimens (different from Streptococcus agalactiae) including commensal and pathogenic microorganisms (yeasts, viruses, parasites and bacteria) from urogenital and intestinal tracts; species phylogenetically similar to S. agalactiae; and human DNA. Bacteria and yeasts were diluted at a concentration of ≥100 CFU/mL SB whereas viruses, parasites and human DNA were prepared at ≥105 DNA or RNA cp/mL SB.

Assays were carried with 3 reagent kit lots on 2 revogene instruments. All samples were tested in triplicate (4 yeasts, 4 viruses, 2 parasites, human DNA and 64 bacteria). The total reactivity rate of the GenePOC GBS LB test with the selected non-specific analytes is 0%.

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Bacteria (strain or gDNA)Name
Acinetobacter baumanniiMycoplasma genitalium gDNA
Aerococcus viridansMycoplasma hominis gDNA
Aeromonas hydrophilaNeisseria gonorrhoeae
Bacillus cereusPeptostreptococcus anaerobius
Bacillus subtilisPorphyromonas asaccharolytica
Bacteroides fragilisPrevotella melaninogenica
Bifidobacterium adolescentisPropionibacterium acnes
Bifidobacterium breveProteus mirabilis
Brevibacterium linensPseudomonas aeruginosa
Campylobacter jejuniSalmonella enterica subsp. enterica serovarDublin
Chlamydia trachomatis gDNASalmonella enterica subsp. enterica serovarMinneapolis
Citrobacter freundiiSalmonella enterica subsp. enterica serovartyphimurium
Clostridium difficileSalmonella enterica subsp. enterica serovarNewport
Clostridium perfringensSerratia marcescens
Corynebacterium genitaliumShigella sonnei
Enterobacter aerogenesStaphylococcus aureus
Enterobacter cloacaeStaphylococcus aureus (Cowan)
Enterococcus aviumStaphylococcus epidermidis
Enterococcus disparStaphylococcus saprophyticus
Enterococcus duransStreptococcus anginosus
Enterococcus faecalisStreptococcus bovis
Enterococcus faeciumStreptococcus dysgalactiae subsp.disgalactiae
Escherichia coliStreptococcus dysgalactiae equisimilis
Escherichia fergusoniiStreptococcus intermedius
Gardnerella vaginalisStreptococcus oralis
Klebsiella oxytocaStreptococcus pneumoniae
Klebsiella pneumoniaeStreptococcus pyogenes
Lactobacillus acidophilusStreptococcus salivarius
NameName
Lactobacillus brevisStreptococcus sanguinis
Lactobacillus caseiStreptococcus uberis
Lactobacillus delbreuckiiUreaplasma urealyticum gDNA
Lactobacillus jenseniiYersinia enterocolitica
Yeasts
Candida albicansCandida parapsilosis
Candida glabrataCandida tropicalis
Viruses (gDNA or RNA)
HerpesSimplexVirus-1 gDNANorovirus GII RNA
HerpesSimplexVirus-2 gDNAHuman Papillomavirus (HPV) gDNA
Parasites (gDNA)
Blastocystis hominis gDNATrichomonas vaginalis gDNA

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g. Interference with Non-Target Organisms

Microbial interference on the GenePOC GBS LB assay was evaluated with 29 potentially interfering microorganisms in absence and in presence of 2 GBS strains tested at 735 CFU/mL of SB. Samples were grouped together into 7 pools of interferences. Each of the 7 pools were tested in triplicate across 3 reagent lots for a total of 9 replicates by pool were analyzed to determine the presence or absence of interference. Results of the study showed no interference against the GBS target (735 CFU/mL of SB) was detected for 26 out of 29 microorganisms when present in high loads (105 or 106 CFU/mL of SB). However, strains Enterococcus faecalis ATCC 19433, Enterococcus faecium ATCC 19434 and Lactobacillus acidophilus ATCC 4356 showed interference against the GBS target (735 CFU/mL of SB) when they were present at >104 CFU/mL of SB. No interference on the Process Control was observed when microorganisms were present in high loads (105 or 106 CFU/mL of SB).

h. Interference with Exogenous and Endogenous Substances

Interference on the GenePOC GBS LB assay was evaluated with 31 potentially interfering exogenous and endogenous substances in absence and in presence of 2 GBS strains tested at 735 CFU/mL SB across 3 reagent lots. The interferences tested included the following: whole blood, leukocytes, amniotic fluid, mucous, seminal fluid. urine, feces, meconium. human DNA. Fungicide, Hemorrhoid cooling gel, Lubricating gel, Body powder, moisturizing lotion, body oil, Deodorant spray, enemas. Antimicrobials, Radiology oral compounds, gastritis medications, Non-Steroidal Anti-Inflammatory, Medications, gastritis medications, anti-Diarrheal medication, Laxatives, Spermicidal, and Moist Towelettes. Results demonstrated no reportable interference on PrC. Only the combination of loperamide hydrochloride (e.g. Imodium®), bismuth

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subsalicylate (e.g. Pepto-Bismol™) and sennosides (e.g. Senokot®) at concentrations of 0.023 ug/mL, 0.675 ug/mL and 0.011 ug/mL SB, respectively, showed a potentially inhibitory effect on detection of GBS. When tested individually, these substances showed no reportable interference with the GBS LB assay.

Carryover and Cross Contamination Studies i.

The carry-over and cross-contamination study showed that there is no evidence of amplicon carry-over or sample contamination when using the revogene with the GenePOC GBS LB assay. A total of 80 samples in the within-run study and 80 samples in the between run study were tested and none gave a false positive result. For each study various combinations of high positive and GBS negative samples were run for each of the 10 runs per study across 3 reagent lots. For each sample, quantitated culture of the organism was diluted in negative matrix. The high positive (>1x106 CFU/mL of SBT) suspension tested in this study was prepared with the S. agalactiae strain Serotype III ATCC 12403.

2. Comparison Studies

  • a. Method Comparison with predicate device Not applicable.
  • b. Matrix Comparison Not applicable.

3. Clinical Studies

GenePOC conducted a prospective multicenter trial at 4 geographically diverse clinical trial sites; specifically, two Canadian and two US clinical sites. A vaginal/rectal swab specimen was collected from n=839 pregnant women at 35-37 weeks of gestation for whom GBS diagnostic procedures were ordered. For each patient, the swab was used for the composite reference method consisting of LIM Broth enrichment of the vaginal/rectal swab followed by a subculture on blood agar plate and biochemical identification of GBS. All specimens with a negative bacterial culture result were re-tested using the same standard operating procedures required for bacterial culture. Residual de-identified LIM Broth samples were used for testing with the GenePOC GBS LB assay. Of those, 63 specimens were regarded as noncompliant per the composite reference method and/or GBS LB assay protocol criteria, 1 specimen was regarded as noncompliant in terms of transport and storage conditions and 4 specimens were regarded as noncompliant due to missing test results. Two (2) fully compliant specimens gave final non-reportable PCR results. A total of 771 specimen results were used to determine the clinical performance of the GBS LB assay in comparison to the composite reference method. A total of 170 GBS positive and 601 GBS negative samples were collected across the four sites.

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Overall performanceCompositeReferenceMethod
PositiveNegativeTotal
GBS LBPositive16327B190
assayNegative7A574581
Total170601771
Sensitivity: 95.9% (95%CI: 91.7 - 98.0 %)
Specificity: 95.5% (95%CI: 93.5 - 96.9 %)

Overall performance characteristics of the GBS LB assay in comparison to the composite reference method.

A 5 out of 7 false negative GenePOC GBS LB results were tested on a FDA-cleared molecular device and yielded negative results.

B 10 out 27 false positive GenePOC GBS LB results were tested on a FDA-cleared molecular device and yielded positive results.

SiteSensitivitySpecificityPrevalence1
187.8%92.8%21.1%
(36/41)(142/153)(41/194)
298.0%97.5%19.8%
(48/49)(194/199)(49/248)
3100%97.0%20.3%
(43/43)(164/169)(43/212)
497.3%92.5%31.6%
(36/37)(74/80)(37/117)
Total95.9%95.5%22.0%
(163/170)(574/601)(170/771)

Summary of performance characteristics of the GBS LB assay per site

1 Prevalence was calculated with samples compliant at culture composite reference method and GenePOC™ GBS LB assay levels.

4. Clinical Cut-off

Not applicable.

5. Expected Values/Reference Range

In the investigational study for the GenePOC GBS LB assay, a total of 771 reportable results from specimens compliant at the culture and PCR levels were obtained from 4 geographically diverse regions. Overall, GBS prevalence rate was 22.0 % (170/771) with a 95 % CI of 19.3 – 25.1 %.

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L. INSTRUMENT NAME:

revogene™M

M. SYSTEM DESCRIPTIONS:

    1. Modes of Operation:
      Real-time Polymerase chain reaction with fluorogenic detection of amplified DNA.
    1. Software:
      FDA has reviewed applicant's Hazard Analysis and software development processes for this line of product types:

Yes X_ or No _________________________________________________________________________________________________________________________________________________________

    1. Specimen Identification:
      Barcodes are used to identify patient specimens. The GenePOC GBS LB assay's Sample Buffer Tube (SBT) and microfluidic cartridge (PIE) both are pre-labeled with a unique barcode to identify both specimen and assay. The instrument has two barcode readers to identify reagents and patient specimens. It provides traceability of the sample ID to the PIE ID, SBT ID, and assay ID.

Specimen Sampling and Handling: 4.

User intervention is required for discharging the patient sample into the SBT, transferring a 150 uL aliquot of the sample into the microfluidic cartridge and for loading the microfluidic cartridge into the revogene. All further specimen handling is automated.

    1. Calibration:
      The system is factory calibrated by the manufacturer as well as during annual preventive maintenance.
    1. Quality Control:
      An Internal Process Control (PrC) provided in each microfluidic cartridge of the GenePOC GBS LB assay. The PrC is lysed, amplified, and detected along with each specimen tested and monitors the efficacy of the DNA extraction and PCR amplification processes.

Commercial control material (e.g. Streptococcus agalactiae ATCC® 13813) can be used as a Positive External Control. It is recommended that bacterial strains be freshly prepared in LIM broth. Transfer a 15 uL aliquot of a 18-24 hours culture in LIM broth into a SBT. Pure LIM broth is recommended for use as a Negative External Control.

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N. OTHER SUPPORTIVE INSTRUMENT PERFORMANCE CHARACTERISTICS DATA NOT COVERED IN THE "PERFORMANCE CHARACTERISTICS" SECTION:

Not applicable.

O. PROPOSED LABELING:

The labeling is sufficient and it satisfies the requirements of 21 CFR Part 809.10.

P. CONCLUSION:

The submitted information in this premarket notification is complete and supports a substantial equivalence decision.

§ 866.3740

Streptococcus spp. serological reagents.(a)
Identification. Streptococcus spp. serological reagents are devices that consist of antigens and antisera (excluding streptococcal exoenzyme reagents made from enzymes secreted by streptococci) used in serological tests to identifyStreptococcus spp. from cultured isolates derived from clinical specimens. The identification aids in the diagnosis of diseases caused by bacteria belonging to the genusStreptococcus and provides epidemiological information on these diseases. Pathogenic streptococci are associated with infections, such as sore throat, impetigo (an infection characterized by small pustules on the skin), urinary tract infections, rheumatic fever, and kidney disease.(b)
Classification. Class I (general controls). The device is exempt from the premarket notification procedures in subpart E of part 807 of this chapter subject to § 866.9.