(266 days)
MammaPrint® FFPE is a qualitative in vitro diagnostic test, performed in a central laboratory, using the gene expression profile obtained from formalin-fixed paraffin embedded (FFPE) breast cancer tissue samples to assess a patient's risk for distant metastasis within 5 years.
The test is performed for breast cancer patients, with Stage II disease, with tumor size ≤ 5.0 cm and lymph node negative. The MammaPrint® FFPE result is indicated for use by physicians as a prognostic marker only, along with other clinico-pathological factors.
The MammaPrint® FFPE test is a microarray based gene expression analysis of a tumor. The analysis is based on several processes: isolation of RNA from FFPE breast cancer tissue sections; elimination of gDNA, reverse transcription of RNA resulting in cDNA; amplification of the cDNA, purification and labeling of cDNA; hybridization of the amplified and labeled cDNA to the diagnostic microarray; washing and scanning the diagnostic microarray and data acquisition (feature extraction); calculation and determination of the risk of recurrence.
The MammaPrint® FFPE analysis is designed to determine the expression of specific genes in a tissue sample. The result is an expression profile, or "fingerprint", of the sample. Using this expression profile, the MammaPrint® FFPE Index is calculated and the molecular prognosis profile of the sample is determined (Low Risk, High Risk).
Below is a summary of the acceptance criteria and study details for the Agendia MammaPrint® FFPE device, based on the provided text.
1. Table of Acceptance Criteria and Reported Device Performance
The acceptance criteria for MammaPrint® FFPE are primarily based on demonstrating equivalence to the MammaPrint® Fresh device (K101454) in terms of concordance and clinical performance.
| Test Category | Acceptance Criteria | Reported Device Performance and Confidence Intervals |
|---|---|---|
| Analytical Performance | ||
| Concordance (FFPE vs. Fresh) - 1st Study (n=122) | High concordance between MammaPrint Fresh and FFPE outcomes. | Overall Concordance: 89.34%True Positive/Negative Concordance (non-borderline): 92.7%NPA (95% CI): 88.4% (80.5-95)PPA (95% CI): 90.6% (79.8-95.9) |
| Concordance (FFPE vs. Fresh) - 2nd Study (n=345) | High concordance between MammaPrint Fresh and FFPE outcomes. | Overall Concordance: 89.28%True Positive/Negative Concordance (non-borderline): 93.5%NPA (95% CI): 91.5% (86.7-94.7)PPA (95% CI): 86.6% (80.4-91.1) |
| Intra-sample Reproducibility (4 isolations) | No significant difference in MammaPrint Indices or Outcome across multiple isolations from the same sample. | MammaPrint Indices: p=0.994 (no significant difference)MammaPrint Outcome: p=0.290 (no significant difference) |
| Inter-assay Reproducibility (Control samples over time) | Standard deviations of MammaPrint Indices for control samples to meet predefined criteria. | PHTR=0.045 (n=54), PLEP=0.056 (n=52), PHHE=0.072 (n=52) (all passed predefined criteria) |
| Method Precision (Repeatability & Within-lab) | Repeatability and Method Precision results to meet predefined acceptance criteria. | Repeatability (Within-Run):High Risk (1): 0.036High Risk (2): 0.046Low Risk: 0.042Low Risk-Borderline: 0.049Method Precision (Within-Laboratory):High Risk (1): 0.044High Risk (2): 0.057Low Risk: 0.050Low Risk-Borderline: 0.066(All met predefined criteria) |
| Inter-laboratory Comparison (Irvine vs. Amsterdam) | High agreement in MammaPrint Index and Outcome between laboratories, passing predefined acceptance criteria. | Irvine: Kappa score = 0.90Amsterdam: Kappa Score = 0.9Intercept close to zero, slope close to 1 (Passing and Bablok regression) |
| Microarray Scanner Comparison (Amsterdam) | High agreement in MammaPrint Index and Outcome between different scanners, passing predefined acceptance criteria. | Pearson correlation = 1.0Kappa score = 1.0NPA (95% CI): 100% (67.6-100)PPA (95% CI): 100% (81.6-99.0)Intercept close to zero, slope close to 1 |
| Microarray Scanner Comparison (Irvine) | High agreement in MammaPrint Index and Outcome between different scanners, passing predefined acceptance criteria. | Pearson correlation = 1.0Kappa score = 1.0NPA (95% CI): 100% (77.2-100)PPA (95% CI): 100% (78.5-100)Intercept close to zero, slope close to 1 |
| Minimum Input (Dilution Study) | Very stable results even at low input of cDNA expected. | Results showed very stable results even at low input of cDNA. |
| Clinical Performance | ||
| 5-year DRFI (Distant Recurrence Free Interval) | MammaPrint FFPE performance (low and high risk signatures) to fall within the 95% CI of MammaPrint Fresh. | Low Risk Signature:MammaPrint Fresh 2013: 0.976 (0.952-1.000)MammaPrint FFPE: 0.977 (0.955-0.999)High Risk Signature:MammaPrint Fresh 2013: 0.891 (0.840-0.942)MammaPrint FFPE: 0.885 (0.830-0.940)(All fall within 95% CI) |
| 5-year DM1st (Distant Metastasis as first event) | MammaPrint FFPE performance (low and high risk signatures) to fall within the 95% CI of MammaPrint Fresh. | Low Risk Signature:MammaPrint Fresh 2013: 0.976 (0.952-1.000)MammaPrint FFPE: 0.977 (0.955-0.999)High Risk Signature:MammaPrint Fresh 2013: 0.907 (0.860-0.954)MammaPrint FFPE: 0.903 (0.854-0.952)(All fall within 95% CI) |
2. Sample Size Used for the Test Set and Data Provenance
- Analytical Performance - Concordance Studies:
- First independent validation: n=122 tumor samples (FFPE vs. Fresh from the same tumor). Data provenance is not explicitly stated beyond being "internal" to Agendia but given the global operations might be multi-country. The study appears to be retrospective as it compares processed samples.
- Second independent validation (Raster study): n=345 samples (FFPE tissue vs. Fresh RNA from the same patients). The Raster study is mentioned as the source, which is a clinical study. The geographical origin is not explicitly stated, but clinical studies often involve multiple centers. It's retrospective in the sense that existing samples with follow-up were used.
- Analytical Performance - Reproducibility & Precision:
- Multiple isolations: 30 FFPE samples. Provenance not specified.
- Multiple labeling/hybridizations (control samples): PHTR (n=54), PLEP (n=52), PHHE (n=52) over time. Provenance not specified.
- Precision and Evaluation (P&E): 4 test samples (representing different risk levels) over 20 days. Provenance not specified.
- Analytical Performance - Inter-laboratory Comparison: 25 FFPE samples. Provenance not specified, but involved samples processed in Amsterdam and Irvine laboratories.
- Analytical Performance - Microarray Scanner Validation: 25 samples (Amsterdam), 27 samples (Irvine). Provenance not specified.
- Analytical Performance - Minimum Input: 3 samples and 3 control samples. Provenance not specified.
- Clinical Performance (Comparison with MammaPrint Fresh):
- Raster study: 345 samples with clinical follow-up of 5 years. This data is from the Raster study, which is a clinical prospective study (although the use here for the FFPE comparison would be retrospective on archived samples).
3. Number of Experts Used to Establish the Ground Truth for the Test Set and Qualifications of Those Experts
The document does not specify the number or qualifications of experts used to establish ground truth for the analytical or clinical validation. The "ground truth" for the analytical studies is the result from the established MammaPrint Fresh assay (K101454) for concordance, or statistical assessments of variability for reproducibility/precision. For clinical outcomes, the ground truth is clinical follow-up data (Distant Recurrence Free Interval and Distant Metastasis as first event) over 5 years. This outcome data is typically collected through clinical study follow-up by medical professionals, but not "established by experts" in the sense of a panel review for each case in this context.
4. Adjudication Method for the Test Set
No explicit adjudication method (like 2+1 or 3+1) is mentioned for the test sets. The ground truth for analytical concordance is the result from the predicate device (MammaPrint Fresh), and for clinical performance, it's the 5-year clinical outcome data (DRFI, DM1st) from the Raster study.
5. If a Multi-Reader Multi-Case (MRMC) Comparative Effectiveness Study was Done
No MRMC comparative effectiveness study involving human readers is described. This device is a gene expression profiling test performed in a central laboratory, not an image-based diagnostic read by human readers. Therefore, the concept of human readers improving with AI assistance is not applicable in this context.
6. If a Standalone (i.e. algorithm only without human-in-the-loop performance) was Done
Yes, the studies described are standalone performance evaluations of the MammaPrint® FFPE algorithm. The "device performance" and "reported device performance" in the table refer to the algorithm's output (Low Risk/High Risk and MammaPrint Index calculation) based on the tissue sample analysis.
7. The Type of Ground Truth Used
- Analytical Performance:
- Concordance: The results from the predicate device, MammaPrint® Fresh (K101454), using fresh tissue samples of the same tumor.
- Reproducibility, Precision, Inter-laboratory, Scanner Validation, Minimum Input: Statistical measures of consistency and variation against predefined internal criteria, using the device's own output.
- Clinical Performance:
- Outcomes Data: 5-year Distant Recurrence Free Interval (DRFI) and 5-year Distant Metastasis as first event (DM1st) collected during the Raster study.
8. The Sample Size for the Training Set
The document does not explicitly state the sample size for a training set for the MammaPrint® FFPE algorithm. The MammaPrint® technology was likely developed and validated using significant cohorts prior to this specific submission, which focuses on extending its use to FFPE samples and demonstrating equivalence. The "Raster study" is mentioned for clinical evaluation, but it's not explicitly stated as a training set. The descriptions focus on the validation of the FFPE version against the established Fresh version and clinical outcomes.
9. How the Ground Truth for the Training Set Was Established
Since a dedicated training set and its ground truth establishment are not described, this information cannot be provided from the given text. MammaPrint is a gene expression profiling test, and the "ground truth" for its original development (not necessarily a "training set" in the machine learning sense for this submission) would typically involve correlating gene expression profiles with long-term clinical outcomes in large patient cohorts to define the prognostic signature. This submission focuses on validating the FFPE version against the already cleared predicate device (MammaPrint Fresh).
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Image /page/0/Picture/1 description: The image is a black and white logo for the U.S. Department of Health & Human Services. The logo features the department's name in a circular arrangement around a symbol. The symbol consists of three stylized human profiles facing right, with flowing lines above them, resembling a bird in flight.
Food and Drug Administration 10903 New Hampshire Avenue Document Control Center - WO66-G609 Silver Spring, MD 20993-0002
Agendia NV Mr. Guido Brink Vice President Regulatory Affairs & Compliance Science Park 406, 1098XH Amsterdam, The Netherlands
Re: K141142 Trade/Device Name: MammaPrint® FFPE Regulation Number: 21 CFR §866.6040 Regulation Name: Gene Expression Profiling Test System for Breast Cancer Prognosis Regulatory Class: Class II Product Code: NYI Dated: December 8, 2014 Received: December 10, 2014
Dear Mr. Guido Brink:
We have reviewed your Section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration. Please note: CDRH does not evaluate information related to contract liability warranties. We remind you, however, that device labeling must be truthful and not misleading.
If your device is classified (see above) into either class II (Special Controls) or class III (PMA), it may be subject to additional controls. Existing major regulations affecting your device can be found in the Code of Federal Regulations, Title 21, Parts 800 to 898. In addition, FDA may publish further announcements concerning your device in the Federal Register.
Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Part 801); medical device reporting (reporting of medical device-related adverse events) (21 CFR 803); good manufacturing practice requirements as set
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forth in the quality systems (QS) regulation (21 CFR Part 820); and if applicable, the electronic product radiation control provisions (Sections 531-542 of the Act); 21 CFR 1000-1050.
If you desire specific advice for your device on our labeling regulation (21 CFR Part 801), please contact the Division of Industry and Consumer Education at its toll-free number (800) 638-2041 or (301) 796-7100 or at its Internet address
http://www.fda.gov/MedicalDevices/Resourcesfor You/Industry/default.htm. Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21CFR Part 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to
http://www.fda.gov/MedicalDevices/Safety/ReportaProblem/default.htm for the CDRH's Office of Surveillance and Biometrics/Division of Postmarket Surveillance.
You may obtain other general information on your responsibilities under the Act from the Division of Industry and Consumer Education at its toll-free number (800) 638-2041 or (301) 796-7100 or at its Internet address
http://www.fda.gov/MedicalDevices/ResourcesforYou/Industry/default.htm.
Sincerely yours,
Reena Philip -S
Reena Philp, Ph.D. Director Division of Molecular Genetics and Pathology Office of In Vitro Diagnostics and Radiological Health Center for Devices and Radiological Health
Enclosure
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Indications for Use
510(k) Number (if known) K141142
Device Name MammaPrint® FFPE
Indications for Use (Describe)
MammaPrint® FFPE is a qualitative in vitro diagnostic test, performed in a central laboratory, using the gene expression profile obtained from formalin-fixed paraffin embedded (FFPE) breast cancer tissue samples to assess a patient's risk for distant metastasis within 5 years.
The test is performed for breast cancer patients, with Stage II disease, with tumor size ≤ 5.0 cm and lymph node negative. The MammaPrint® FFPE result is indicated for use by physicians as a prognostic marker only, along with other clinico-pathological factors.
| Type of Use (Select one or both, as applicable) | |
|---|---|
| Prescription Use (Part 21 CFR 801 Subpart D) | Over-The-Counter Use (21 CFR 801 Subpart C) |
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510(k) Summary
I. Submitter
Agendia NV Science Park 406 1098XH Amsterdam The Netherlands Telephone: 31 20 462 1500 Contact person: Guido Brink, VP Regulatory Affairs and EU Market Access Date Prepared: January 22nd, 2015
II. Device
Name of Device: MammaPrint® FFFPE Common or Usual Name: Multivariate device for cancer prognosis Classification Name: Gene expression profiling test system, for breast cancer prognosis (21 CFR 866.6040) Requlatory Class: Class II Product Code: NYI
III. Predicate Device Agendia NV's MammaPrint (K101454)
IV. Device Description
The MammaPrint® FFPE test is a microarray based gene expression analysis of a tumor. The analysis is based on several processes: isolation of RNA from FFPE breast cancer tissue sections; elimination of gDNA, reverse transcription of RNA resulting in cDNA; amplification of the cDNA, purification and labeling of cDNA; hybridization of the amplified and labeled cDNA to the diagnostic microarray; washing and scanning the diagnostic microarray and data acquisition (feature extraction); calculation and determination of the risk of recurrence.
The MammaPrint® FFPE analysis is designed to determine the expression of specific genes in a tissue sample. The result is an expression profile, or "fingerprint", of the sample. Using this expression profile, the MammaPrint® FFPE Index is calculated and the molecular prognosis profile of the sample is determined (Low Risk, High Risk).
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Image /page/4/Picture/1 description: The image shows the logo for Agendia. The logo consists of a colorful fingerprint above the word "agendia" in a stylized, lowercase font. The fingerprint is made up of concentric lines in various colors, including red, orange, yellow, green, blue, and purple. The word "agendia" is written in a modern, sans-serif font with rounded corners.
V. Intended Use
MammaPrint® FFPE is a qualitative in vitro diagnostic test, performed in a central laboratory, using the gene expression profile obtained from formalin-fixed paraffin embedded (FFPE) breast cancer tissue samples to assess a patient's risk for distant metastasis within 5 years.
The test is performed for breast cancer patients, with Stage II disease, with tumor size ≤ 5.0 cm and lymph node negative. The MammaPrint® FFPE result is indicated for use by physicians as a prognostic marker only, along with other clinico-pathological factors.
VI Comparison of technological characteristics with the predicate device
MammaPrint FFPE shares the same principles of operation, overall technical and functional capabilities as the predicate device covered under K101454. The only difference concerns the pre-analytical sample preparation; the use of formalin-fixed paraffin embedded (FFPE) breast tumor tissue in addition to fresh breast tumor tissue as is used in the predicate device.
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Image /page/5/Picture/1 description: The image shows the logo for Agendia. The logo features a colorful fingerprint design above the word "agendia" in a stylized, lowercase font. The fingerprint is made up of concentric lines in various colors, including red, orange, yellow, green, blue, and purple. The word "agendia" is written in a gray, sans-serif font with rounded edges.
VII. Performance Testing (Bench)
Analytical performance
MammaPrint analytical (i.e., non-clinical) performance characteristics investigated comprise concordance between FFPE tissue samples and Fresh as well as Precision and Reproducibility performance assessment. Also inter-laboratory and microarray scanner comparisons are included.
1 - Concordance FFPE tissue samples and Fresh
First independent validation: n=122
In order to extend the intended use of MammaPrint to FFPE samples as well as Fresh a concordance comparison was performed. A selection of 122 tumor samples was used from which one section of the tumor was preserved as Fresh and a second part as FFPE. The Fresh section of the tumor was subjected to latest design controlled version (internal version US09.1 / EU09.1) of the latest FDA cleared MammaPrint assay (K101454) and the FFPE sections were subjected to MammaPrint FFPE (internal version US01.1 / EU01.1). The MammaPrint results from Fresh and FFPE sections for each sample were compared.
The overall concordance in outcome between MammaPrint Fresh and FFPE is 89.34 %. If only the true positives and negatives are considered (non-borderline samples), there is a concordance of 92.7%. For this comparison the NPA is equal to 88.4% (95%C): 80.5 to 95) and the PPA was 90.6% (95%C1: 79.8 to 95.9).
Second independent validation: n=345 (Raster study)
A second concordance comparison between MammaPrint Fresh and FFPE was performed using the Raster study. A selection of 345 samples was used from which Fresh RNA as well as FFPE tissue was available. The Fresh RNA was subjected to MammaPrint Fresh version US09.1/EU09.1 and the FFPE tissues were subjected to MammaPrint FFPE version US01.1/EU01.1.
The concordance in this Raster sample set was 89.28%. If only the true positives (nonborderlines) are considered the concordance is equal to 93.5%. For this comparison the NPA is equal to 91.5% (95%C1: 86.7 to 94.7) and the PPA was 86.6% (95%C1: 80.4 to 91.1).
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Image /page/6/Picture/1 description: The image shows the logo for Agendia. The logo features a stylized fingerprint composed of concentric lines in various colors, including red, orange, yellow, green, blue, and purple. Below the fingerprint is the word "agendia" in a lowercase, sans-serif font with rounded edges.
2 - Test Performance
Test performance of MammaPrint FFPE was assessed on different levels.
- l. Reproducibility was assessed on multiple isolations from the same sample (report VR-TR-206a). For 30 FFPE samples four isolations were performed: 11, 12, 13 and 14. All 4 isolations were further processed to generate MammaPrint FFPE results.
A repeated Measurements ANOVA was used to determine if there was a difference in MammaPrint Indices over all four isolations. The results show that there is no significant difference (p=0.994).
A Cochran's Q test was used to assess the difference in MammaPrint Outcome over the four isolations. The results of this test show that there is no significant difference in MammaPrint Outcome over the different isolations (p=0.290).
- II. Reproducibility was assessed on multiple labeling/hybridizations by measuring FFPE control samples overtime (report VR-TR-233a):
- Paraffin, High risk ● PHTR:
- PLEP: Paraffin, Low risk
- РННЕ: Paraffin, High risk ●
This was performed on a daily basis in order to obtain overtime MammaPrint FFPE results for all three controls. The standard deviations passed the predefined acceptance criteria (stdevs: PHTR=0.045 (n=54), PLEP=0.056 (n=52), PHHE=0.072 (n=52)).
- ============================================================================================================================================================================== A Precision and Evaluation (P&E) experiment (NCCLS, Evaluation of Precision Performance of Quantitative Measurement methods, EP5-A2) was performed to determine the Repeatability and Method Precision of MammaPrint FFPE test (report VR-TR-223a). This experiment set up consists of repeated runs over 20 days in which all test outcome levels are represented by one test sample. After collecting the data from 20 successive days, statistical analysis was performed to determine the repeatability and within-lab precision per sample level:
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| Repeatability (Within-Run) | Method Precision (within-Laboratory) | ||||
|---|---|---|---|---|---|
| Sample ID | Sample level: outcome | Standard deviation | Variance | Standard deviation | Variance |
| 11003290 | High Risk | 0.036 | 0.0013 | 0.044 | 0.0019 |
| 11003347 | High Risk | 0.046 | 0.0021 | 0.057 | 0.0033 |
| 11003810 | Low Risk | 0.042 | 0.0018 | 0.050 | 0.0025 |
| 11003860 | Low Risk - Borderline | 0.049 | 0.0024 | 0.066 | 0.0044 |
The P&E results for Repeatability and Method Precision meet the predefined acceptance criteria.
3 - Inter-laboratory comparison of MammaPrint FFPE between Irvine and Amsterdam laboratories
For this validation 25 FFPE samples were selected from which MammaPrint FFPE results were previously generated using standard FFPE protocols in Amsterdam. From these samples sections were taken and processed from isolation onwards by the diagnostic departments in both Agendia Irvine and Amsterdam according to standard protocols.
The MammaPrint FFPE results generated for these 25 samples at Irvine and Amsterdam locations were compared to the previously generated results. These results meet the predefined acceptance criteria (Irvine: Kappa score = 0.90, Amsterdam: Kappa Score = 0.9).
Furthermore, the Passing and Bablok regression analysis also showed that there is high agreement in MammaPrint Index within this inter-laboratory comparison of Amsterdam and Irvine Operations. For both locations the intercept is close to zero and the slope is close to 1.
4 - Validation of use of multiple microarray scanners for MammaPrint FFPE Irvine and Amsterdam
For the validation of both micro-array scanners in central lab in Amsterdam, 25 samples were hybridized two times; first on the originally validated scanner, serial number US810R3210 and in addition using the scanner with serial number US22502555. MammaPrint Indices were compared between both scanners. The comparison of MammaPrint indices between both scanners meet the predefined acceptance criteria (Pearson correlation = 1.0). Also the comparison of MammaPrint Outcome meet the predefined acceptance criteria (Kappa score =1.0, NPA= 100% (95%C): 67.6 to 100), PPA= 100% (95%C):81.6 to 99.0)).
Furthermore, the Passing and Bablok regression analysis also showed that there is high agreement in MammaPrint Index between both scanners located in Amsterdam. For this comparison the intercept is close to zero and the slope is close to 1.
For the validation of both micro-array scanners in central lab in Irvine, 27 samples were hybridized two times; first on the originally validated scanner, serial number US811R3213 and in addition using the scanner with serial number US45103019. MammaPrint Indices were compared between both scanners.
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The comparison of MammaPrint indices between both scanners meet the predefined acceptance criteria (Pearson correlation = 1.0). Also the comparison of MammaPrint Outcome meet the predefined acceptance criteria (Kappa score =1.0 NPA= 100% (95%C): 77.2 to 100), PPA= 100% (95%C):78.5 to 100)).
Furthermore, the Passing and Bablok regression analysis also showed that there is high agreement in MammaPrint Index between both scanners located in Irvine. For this comparison the intercept is close to zero and the slope is close to 1.
5 – Determine minimum input in hybridization of MammaPrint FFPE
A dilution study was performed to determine the minimum input of labeled cDNA in a hybridization of MammaPrint FFPE. In this dilution study three samples as well as three MammaPrint FFPE control samples were each labeled five times and per sample to generate sufficient amount of labeled material. Samples were then diluted in 8 steps with water to reach the specific yield (ng),in which step 8 reflects a hybridization with no labeled material.
MammaPrint FFPE results were compared over the different dilution and showed very stable results even at low input of cDNA.
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Image /page/9/Picture/1 description: The image shows the logo for Agendia. The logo features a colorful, fingerprint-like design above the word "agendia" in a lowercase, sans-serif font. The fingerprint design has a gradient of colors, including red, orange, yellow, green, blue, and purple, arranged in a swirling pattern.
VIII. Performance testing-Clinical
As part of this submission of MammaPrint FFPE the clinical performance of MammaPrint FFPE was compared to MammaPrint Fresh. For this comparison samples were used that were part of the Raster study that were processed on MammaPrint Fresh between 2004 and 2007 and currently have a clinical follow-up of 5 years. For the clinical performance evaluation of MammaPrint FFPE on RASTER FFPE samples, endpoints were defined as Distant Recurrence Free Interval (DRFI) as presented for the Raster study1 as well as the 5 year Distant Metastasis as first event (DM1®).
Comparison based on DRFI
(Figure 5.1 A and B respectively).
For both the Fresh version of MammaPrint as well as the FFPE version, Kaplan-Meier curves showed a significant difference in DRFI the Low and High Risk groups LogRank p=0.001)
Image /page/9/Figure/6 description: The image contains two Kaplan-Meier plots comparing the DRFI probability over time (in months) for low-risk and high-risk patients based on MammaPrint analysis. Plot A shows the results for the FRESH 2013 cohort, while plot B shows the results for the FFPE cohort. In both plots, the green line represents the low-risk group, and the red line represents the high-risk group, with a p-value of 0.001 indicating a statistically significant difference between the two risk groups in both cohorts.
F igure 5.1: Kaplan-Meier analysis of the 5 year DRFI probability among 345 patients with LN0 breast cancer that were part of the Raster study for A) MammaPrint F resh and B) MammaPrint F F PE
The 5-year DFRI of both MammaPrint Fresh and FFPE is shown in below. The performance of MammaPrint FFPE falls within the 95% Cl of MammaPrint Fresh and therefore complies with the predefined acceptance criteria.
| MammaPrint Fresh 2013 | MammaPrint FFPE | |||||
|---|---|---|---|---|---|---|
| 95% CI | 95% CI | |||||
| Low Risk Signature | 0.976 | 0.952 | 1.000 | 0.977 | 0.955 | 0.999 |
| High Risk Signature | 0.891 | 0.840 | 0.942 | 0.885 | 0.830 | 0.940 |
Based on the results shown MammaPrint FFPE is clinically equivalent to the predicate device MammaPrint Fresh (K101454).
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Image /page/10/Picture/1 description: The image shows the logo for Agendia. The logo features a stylized fingerprint above the word "agendia." The fingerprint is made up of concentric lines in a variety of colors, including red, orange, yellow, green, blue, and purple. The word "agendia" is written in a lowercase, sans-serif font.
Comparison based on DM 1st
The 5-year DM1st survival of both MammaPrint Fresh and FFPE is shown below. The performance of MammaPrint FFPE falls within the 95% Cl of MammaPrint Fresh and therefore complies with the predefined acceptance criteria.
| MammaPrint Fresh 2013 | MammaPrint FFPE | ||||||
|---|---|---|---|---|---|---|---|
| 95% CI | 95% CI | ||||||
| Low Risk Signature | 0.976 | 0.952 | 1.000 | Low Risk Signature | 0.977 | 0.955 | 0.999 |
| High Risk Signature | 0.907 | 0.860 | 0.954 | High Risk Signature | 0.903 | 0.854 | 0.952 |
Prognostic assessment of MammaPrint® FFPE was further investigated using a univariate and multivariate analysis. In the univariate analysis MammaPrint FFPE is significantly associated with risk recurrence. Multivariate analysis did not conclusively demonstrate prognostic significance for MammaPrint FFPE beyond that of other clinicopathological factors. This is attributable to the RASTER study design, in which MammaPrint result was included along with all relevant clinic-pathological factors, and treatment decisions were guided by assessed prognostic risk and the standard of practice. In this real-world context, the overall cohort experienced a low event rate which, despite the favorable trend, diminishes independent contribution of MammaPrint.
IX. Conclusion
MammaPrint FFPE and its predicate device MammaPrint Fresh (K101454) are a clinically and analytically accurate prognostic marker for providing a risk assessment of distant metastasis of breast cancer when performed in either Agendia's European or US central laboratory.
END OF DOCUMENT
§ 866.6040 Gene expression profiling test system for breast cancer prognosis.
(a)
Identification. A gene expression profiling test system for breast cancer prognosis is a device that measures the ribonucleic acid (RNA) expression level of multiple genes and combines this information to yield a signature (pattern or classifier or index) to aid in prognosis of previously diagnosed breast cancer.(b)
Classification. Class II (special controls). The special control is FDA's guidance document entitled “Class II Special Controls Guidance Document: Gene Expression Profiling Test System for Breast Cancer Prognosis.” See § 866.1(e) for the availability of this guidance document.