K Number
DEN140019
Manufacturer
Date Cleared
2014-09-22

(118 days)

Product Code
Regulation Number
866.3960
Type
Direct
Reference & Predicate Devices
N/A
Predicate For
N/A
AI/MLSaMDIVD (In Vitro Diagnostic)TherapeuticDiagnosticis PCCP AuthorizedThirdpartyExpeditedreview
Intended Use

The T2Candida Panel and T2Dx® Instrument is a qualitative T2 Magnetic Resonance (T2MR®) assay for the direct detection of Candida species in EDTA human whole blood specimens from patients with symptoms of, or medical conditions predisposing the patient to, invasive fungal infections. The T2Candida Panel identifies five species of Candida and categorizes them into the following three species groups:

  1. Candida albicans and/or Candida tropicalis,
  2. Candida parapsilosis
  3. Candida glabrata and/or Candida krusei

The T2Candida Panel does not distinguish between C. albicans and C. tropicalis. The T2Candida Panel does not distinguish between C. glabrata and C. krusei.

The T2Candida Panel is indicated for the presumptive diagnosis of candidemia. The T2Candida Panel is performed independent of blood culture. Concomitant blood cultures are necessary to recover organisms for susceptibility testing or further identification.

The T2Candida positive and negative External Controls are intended to be used as quality control samples with the T2Candida Panel when run on the T2Dx® instrument system. These controls are not intended for use with other assays or systems.

Device Description

The T2Candida panel and T2Dx® Instrument is comprised of the T2Candida Panel performed on the T2Dx® Instrument. The T2Candida Panel is a qualitative molecular diagnostic assay that employs a whole blood compatible PCR amplification followed by T2 magnetic resonance (T2MR) detection. The T2Candida Panel is performed on the T2Dx Instrument which executes all steps after specimen loading. A K2 EDTA whole blood specimen is loaded onto the T2Candida Sample Inlet, which is then placed on the T2Candida Base along with the T2Candida Reagent Pack. The Reagent Pack contains the internal control, amplification reagent, enzyme and the probe-coupled superparamagnetic particles for each Candida target. Three milliliters of the blood specimen is transferred to the T2Dx® Instrument where lysis of the red blood cells, concentration and lysis of the Candida cells and amplification of the Candida DNA takes place. Amplification products are detected by T2MR detection using species-specific probes which are attached to the superparamagnetic particles. At the end of each assay, the T2Dx® Instrument uses a bleach solution to neutralize all liquids on the cartridge to mitigate the risk of amplicon contamination. The assay provides an identification of Candida albicans and/or Candida tropicalis, Candida parapsilosis, and Candida glabrata and/or Candida krusei. The test does not distinguish between C. albicans and C. tropicalis. The test does not distinguish between C. glabrata and C. krusei.

AI/ML Overview

Acceptance Criteria and Device Performance Study for T2Candida Panel and T2Dx® Instrument

1. Table of Acceptance Criteria and Reported Device Performance

The provided document does not explicitly present a table of acceptance criteria in numerical values for clinical performance metrics (like minimum desired PPA/NPA). Instead, it describes various studies and their results, implying that these results were deemed acceptable for market clearance. For the purpose of this response, I will interpret "acceptance criteria" as the performance metrics that were reported and considered satisfactory by the FDA for the device to be classified.

Performance MetricAcceptance Criteria (Implied)Reported Device Performance
Analytical Performance
Precision/ReproducibilityHigh agreement with expected results across sites, lots, and operators.C. parapsilosis: 100% agreement (Low & High LoD)C. glabrata: 97.2% (Low LoD), 98.1% (High LoD)C. albicans: 95.4% (Low LoD), 99.1% (High LoD)Negative: 100% agreementInvalid Results: 1.6% (13/830)Instrument Failures: 2.1% (17/830)False Positives: 0.4% (3/830)
Limit of Detection (LoD)95% detection rate at stated LoD.C. albicans: 2 CFU/mLC. tropicalis: 1 CFU/mLC. parapsilosis: 3 CFU/mLC. glabrata: 2 CFU/mLC. krusei: 1 CFU/mLInvalid results: 2.7% (23/845)False positives: 0.6% (5/845)
Single/Multi-species Spike Equiv.Multi-spike results equivalent to single-spike results.Results from multi-species spiked samples were equivalent to single-species spiked samples. Invalid Results: 1.8% (5/281)Instrument failure: 1.4% (4/281)False positive: 0.7% (2/281)
Analytical SensitivityHigh percentage of strains detected at 2-3X LoD.C. albicans: 100% (15/15)C. tropicalis: 93.3% (14/15) - remaining strain detected on retest.C. krusei: 100% (15/15)C. glabrata: 100% (15/15)C. parapsilosis: 100% (15/15)False positives: 0.9% (2/225)
Co-infection StudiesHigh detection rates for target Candida species in presence of other organisms.Candida sp./Candida sp. (both 1-2X LoD): 95.2% (118/124)Candida sp. (1-2X LoD)/Candida sp. (100 CFU/mL): 96.8% (244/252)Candida sp. (1-2X LoD)/other genus (100 CFU/mL): 94.5% (189/200)Invalid Results: 1.5% (24/1597)False Positives: 0.3% (5/1597)
Analytical Specificity (Cross-reactivity)No cross-reactivity with non-target organisms at clinically relevant concentrations.41 species showed no cross-reactivity. 30 species causing invalid results at high concentrations but no cross-reactivity at clinical concentrations. 5 species causing positive/invalid results at high concentrations but no cross-reactivity at clinical concentrations. Cross-reactive species: C. bracarensis, S. cerevisiae, C. metapsilosis, C. orthopsilosis.
Interfering SubstancesNo significant interference in T2 signal.Interference observed with: Feraheme, Magnevist, EDTA, Ablavar, and Intralipid (simulating lipemia).Invalid Results: 0.7% (12/1647)False Positives: 0.3% (5/1647)
Cross-over/ContaminationLow false positive rate due to carryover.1.7% false positive rate (3/175 negative samples), all from samples spiked at 100 CFU/mL.
Clinical Performance
Clinical Sensitivity (Contrived)High positive percent agreement (PPA), especially at concentrations ≥ LoD.Overall PPA: A/T: 94.0%, P: 94.0%, K/G: 88.0%PPA at ≥ LoD: A/T: 97.5% (C. albicans), 100% (C. tropicalis); P: 100% (C. parapsilosis); K/G: 97.4% (C. krusei), 100% (C. glabrata).Overall NPA: 100% (negative samples)False positive: 0.4% (1/250 spiked samples)
Clinical Specificity (Prospective)High negative percent agreement (NPA).NPA: A/T: 98.8%, P: 99.2%, K/G: 99.9% (Based on blood culture negative for Candida, from 1501 prospective samples).Clinical Sensitivity: A/T: 50.0% (2/4), P: 100% (2/2), K/G: 100% (1/1) for blood culture positive samples.The document notes a low sensitivity for C. albicans in the prospective study due to small sample size (4 positive samples).

2. Sample sizes used for the test set and data provenance

  • Test Set (Clinical Study - Contrived Samples):

    • Sample Size: 250 positive contrived samples (50 isolates for each of the five Candida targets, spiked at specific concentrations) + 50 negative unspiked blood specimens = 300 total samples.
    • Data Provenance: The human blood specimens were collected from patients at three clinical sites in K2EDTA tubes. These specimens were then transported to T2 Biosystems for preparation of contrived samples. The prepared samples were de-identified and shipped to testing sites. The data is thus a mix of prospective (blood collection) and contrived (spiking) for the positive samples, and prospective for the negative samples. The isolates used for spiking were obtained from a reference laboratory and a clinical laboratory (US, implicitly).
  • Test Set (Clinical Study - Prospective Samples):

    • Sample Size: 1501 blood specimens from adult patients.
    • Data Provenance: Prospective. Specimens were collected at nine geographically diverse sites.

3. Number of experts used to establish the ground truth for the test set and their qualifications

The document does not explicitly state the number or qualifications of experts used to establish the ground truth for the test set.

  • For the Contrived Samples: The "ground truth" (presence and concentration of Candida species) was established through controlled laboratory spiking (colony count testing) and sequencing of isolates. This is an analytical determination, not typically requiring expert consensus on diagnosis.
  • For the Prospective Samples: The "ground truth" for candida presence/absence was primarily established by blood culture results, which is a standard laboratory reference method. The identification of isolates was confirmed by sequence analysis of the ITS2 region. While a clinical microbiologist or pathologist would interpret these results, the document does not specify a panel of experts for adjudication.

4. Adjudication method for the test set

  • For the Contrived Samples: No formal adjudication method involving multiple human readers is described for the contrived samples. The ground truth was based on the known spiking composition and verified colony counts. Discrepancies (e.g., initial LoD not validated) led to retesting.
  • For the Prospective Samples: The "gold standard" was blood culture. For false positive T2Candida results (where blood culture was negative), a chart and case history review was conducted. This review process itself can be seen as a form of clinical adjudication, attempting to find clinical evidence supporting or refuting the T2Candida result when the primary reference method (blood culture) disagreed. However, the document does not specify an "adjudication method" in the sense of a consensus panel (e.g., 2+1, 3+1).

5. If a multi-reader multi-case (MRMC) comparative effectiveness study was done, If so, what was the effect size of how much human readers improve with AI vs without AI assistance

No. A multi-reader multi-case (MRMC) comparative effectiveness study involving human readers or AI assistance was not conducted or described. The T2Candida Panel and T2Dx® Instrument is a molecular diagnostic assay that provides a direct result for Candida species; it is not an image-based AI device that would typically involve human readers interpreting AI output.

6. If a standalone (i.e. algorithm only without human-in-the-loop performance) was done

Yes. The studies described for the T2Candida Panel and T2Dx® Instrument represent standalone (algorithm only) performance. The device fully automates the processing and analysis steps after manual specimen loading, and "the T2Dx® Instrument reports a positive or negative result for each detection channel." The performance metrics (sensitivity, specificity, PPA, NPA, precision, LoD, etc.) are all indicative of the device's inherent capability to detect Candida species from whole blood without real-time human interpretation or modification of its direct output.

7. The type of ground truth used

  • For Analytical Studies (Precision, LoD, Analytical Sensitivity, Co-infection, Analytical Specificity): The ground truth was established by controlled laboratory preparation of samples with known Candida species and concentrations, verified by colony count testing and sequence analysis of isolates. Negative controls were known to be free of Candida.
  • For Clinical Studies (Contrived Samples): The ground truth was established by controlled laboratory spiking of blood specimens with specific, verified Candida isolates at known concentrations. Negative samples were unspiked blood.
  • For Clinical Studies (Prospective Samples): The ground truth for the presence or absence of Candida infection was primarily based on blood culture results, which is a widely accepted laboratory reference standard for candidemia. For "false positives" by T2Candida where blood culture was negative, chart and case history review was used to provide further context.

8. The sample size for the training set

The document does not explicitly specify a "training set" in the context of machine learning model development. For molecular diagnostic assays like the T2Candida Panel, the development process typically involves extensive analytical studies to establish assay design, primer/probe specificity, cutoff values, and performance characteristics, rather than training a machine learning algorithm on a distinct dataset.

However, the assay cut-off values (Table 12) for the T2MR signal were established using a "limit of blank study" with negative blood specimens from 113 healthy and 39 unhealthy patients (total 152 samples), tested with two different reagent lots. This serves a similar purpose to training data for setting a threshold.

9. How the ground truth for the training set was established

As noted above, there isn't a "training set" in the traditional machine learning sense. However, the ground truth for establishing the assay cut-off (analogous to a threshold used in training) was:

  • Negative blood specimens: Confirmed to be negative for Candida (implied by sourcing from healthy/unhealthy patients and used to determine the upper limit of T2 signal distribution for negative measurements).
  • Positive internal control measurements: Used to determine the lower limit of T2 signal for positive internal controls. The internal control itself is a known DNA sequence amplified and detected within each sample.

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EVALUATION OF AUTOMATIC CLASS III DESIGNATION FOR T2Candida Panel and T2Dx® Instrument

DECISION SUMMARY

A. DEN Number:

DEN140019

B. Purpose for Submission:

De Novo request for evaluation of automatic class III designation for the T2Candida Panel and T2Dx® Instrument

C. Measurands:

The assay amplifies and detects nucleic acids of the following species: Candida albicans and/or Candida tropicalis Candida parapsilosis Candida krusei and/or Candida glabrata

D. Type of Test:

The T2Candida Panel, performed on the T2Dx® Instrument, is a molecular diagnostic assay for the detection of the above listed Candida species from whole blood specimens obtained from patients with signs and symptoms of invasive Candida infection.

E. Applicant:

T2 Biosystems, Inc.

F. Proprietary and Established Names:

T2Candida Panel and T2Dx® Instrument

G. Regulatory Information:

    1. Regulation section:
      21 CFR 866.3960
    1. Classification:
      Class II
    1. Product code(s):

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PII

NSU

    1. Panel:
      83- Microbiology

H. Intended Use:

    1. Intended use(s):
      The T2Candida Panel and T2Dx® Instrument is a qualitative T2 Magnetic Resonance (T2MR®) assay for the direct detection of Candida species in EDTA human whole blood specimens from patients with symptoms of, or medical conditions predisposing the patient to, invasive fungal infections. The T2Candida Panel identifies five species of Candida and categorizes them into the following three species groups:
    1. Candida albicans and/or Candida tropicalis,
    1. Candida parapsilosis
    1. Candida glabrata and/or Candida krusei

The T2Candida Panel does not distinguish between C. albicans and C. tropicalis. The T2Candida Panel does not distinguish between C. glabrata and C. krusei.

The T2Candida Panel is indicated for the presumptive diagnosis of candidemia. The T2Candida Panel is performed independent of blood culture. Concomitant blood cultures are necessary to recover organisms for susceptibility testing or further identification.

The T2Candida positive and negative External Controls are intended to be used as quality control samples with the T2Candida Panel when run on the T2Dx® instrument system. These controls are not intended for use with other assays or systems.

    1. Indication(s) for use:
      Same as Intended Use
    1. Special conditions for use statement(s):
      For prescription use only.
    1. Special instrument requirements:
      The T2Candida Panel is performed on the T2Dx® Instrument.

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I. Device Description:

The T2Candida panel and T2Dx® Instrument is comprised of the T2Candida Panel performed on the T2Dx® Instrument. The T2Candida Panel is a qualitative molecular diagnostic assay that employs a whole blood compatible PCR amplification followed by T2 magnetic resonance (T2MR) detection. The T2Candida Panel is performed on the T2Dx Instrument which executes all steps after specimen loading. A K2 EDTA whole blood specimen is loaded onto the T2Candida Sample Inlet, which is then placed on the T2Candida Base along with the T2Candida Reagent Pack. The Reagent Pack contains the internal control, amplification reagent, enzyme and the probe-coupled superparamagnetic particles for each Candida target. Three milliliters of the blood specimen is transferred to the T2Dx® Instrument where lysis of the red blood cells, concentration and lysis of the Candida cells and amplification of the Candida DNA takes place. Amplification products are detected by T2MR detection using species-specific probes which are attached to the superparamagnetic particles. At the end of each assay, the T2Dx® Instrument uses a bleach solution to neutralize all liquids on the cartridge to mitigate the risk of amplicon contamination. The assay provides an identification of Candida albicans and/or Candida tropicalis, Candida parapsilosis, and Candida glabrata and/or Candida krusei. The test does not distinguish between C. albicans and C. tropicalis. The test does not distinguish between C. glabrata and C. krusei.

J. Standard/Guidance Document Referenced (if applicable):

  • . IEC 61010-1:2001, (Second Edition). Safety requirements for electrical equipment for measurement control and laboratory use - General requirements. 2001
  • . IEC61010-2-010:2003 (Second Edition). Safety requirements for electrical equipment for measurement, control, and laboratory use - Part 2-010. Particular requirements for laboratory equipment for the heating of materials. 2003
  • IEC 61010-2-081:2001 (First Edition) + A1:2003. Safety requirements for electrical . equipment for measurement, control and laboratory use - Part 2-081: Particular requirements for automatic and semiautomatic laboratory equipment for analysis and other purposes. 2001
  • . IEC 61010-2-101:2002 (Second Edition). Safety requirements for electrical equipment for measurement, control, and laboratory use. Particular requirements for in vitro diagnostic (IVD) medical equipment. 2002.
  • . IEC 61326-1:2005. Electrical equipment for measurement, control and laboratory use -EMC requirements - Part 1: General requirements. 2005
  • . IEC 61326-2-6:2005. Electrical equipment for measurement, control and laboratory use -EMC requirements - Part 2-6: Particular requirements - In vitro diagnostic (IVD) medical equipment. 2005
  • . CISPR 11:2003 Group 1 Class A. Industrial, scientific and medical equipment -Radiofrequency disturbance characteristics – Limits and methods of measurement. 2003
  • . CLSI MM03-A2. Molecular Diagnostic Methods for Infectious Diseases: Approved Guideline. 2008
  • CLSI EP17-A2. Protocols for Determination of Limits of Detection and Limits of . Quantitation: Approved Guideline. 2013.

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  • CLSI EP07-A2. Interference Testing in Clinical Chemistry. 2007 ●
  • . CLSI EP05-A2. Evaluation of Precision Performance of Quantitative Measurement Methods. 2005
  • CLSI EP25-A. Evaluation of Stability of In Vitro Diagnostic Reagents. 2013.
  • LIS01-A2. Standard Specification for Low Level Protocol to Transfer Messages Between Clinical Laboratory Instruments and Computer Systems; Approved Standard - Second Edition. Maintained by CLSI. 2009
  • . LIS02-A2. Standard Specification for Transferring Information Between Clinical Laboratory Instruments and Information Systems; Approved Standard - Second Edition. Maintained by CLSI. 2008
  • . ISTA 7E. Testing Standard for Thermal Transport Packaging Used in Parcel Delivery System Shipment. 2010
  • ISTA 2A. Partial Simulation Performance Test (ASTM D5276 Drop Test). 2011. ●
  • CLSI EP12-A2. User Protocol for Evaluation of Qualitative Test Performance: Approved . Guideline - Second Edition. 2014.

K. Test Principle:

In the T2Candida Panel and the T2Dx® Instrument a single pair of pan-Candida primers hybridizes to conserved sequences within the 5.8S and 26S ribosomal RNA operon of Candida species and amplify the intervening transcribed spacer 2 sequence (ITS2) released from the lysed Candida cells contained in the specimen. The primers are mixed in a ratio such that an asymmetric produces a predominantly single stranded nucleic acid after amplification. The primers are designed to also amplify the internal control. Speciesspecific and internal control-specific probes provide the specificity of the assay. The instrument detects the amplified PCR product directly in the whole blood matrix by amplicon-induced agglomeration of superparamagnetic particles to which the speciesspecific and internal control-specific probes are attached. The detection method measures the spin-spin relaxation signals of water molecules. For these measurements, the T2Dx Instrument utilizes a small permanent magnet and a specialized radio frequency coil to measure the T2MR signal from the water molecules. T2MR measures the disorder of the nuclear spins of the water molecules contained in the sample and this disorder is directly proportional to the superparamagnetic particle clustering state. The T2Dx® Instrument reports a positive or negative result for each detection channel [C. albicans/C. tropicalis (A/T), C. parapsilosis (P), C. krusei/ C. glabrata (K/G) and internal control (IC)].

L. Performance Characteristics:

1. Analytical performance:

a. Precision/Reproducibility

A multicenter reproducibility study was performed to determine the run to run, reagent lot, day to day, and site to site reproducibility. Testing was performed at three sites (two external and one internal) with a panel of three Candida species (C. albicans, C. parapsilosis and C. glabrata), each tested at two concentrations (1 - 2X

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LoD. 3 - 4X LoD) using two reagent lots. Testing was performed for six nonconsecutive days with two runs and two operators per day. Organisms were tested in triplicate. A total of 108 data points were determined for each analyte at each concentration.

The organisms were prepared in fresh negative human blood samples and the concentration of organisms that were spiked in the samples was confirmed using colony count testing. Spiked samples were prepared by T2 Biosystems, deidentified and shipped to the testing sites under refrigerated conditions and stored at 2 - 8° C until testing. Reproducibility results were acceptable with a range of 95.4 to 100% agreement with expected results for each Candida species tested. A summary of the results is shown in Table 1 below.

Of the total 830 tests obtained, an analysis was conducted to assess the rate of invalid results. instrument failure or false positives. Those were as follows:

Invalid Results: 13/830 tests (1.6%) Instrument Failures: 17/830 tests (2.1%) False Positive: 3/830 (0.4%)

OrganismConcentrationTest siteNo.DetectedNo. NotDetected%AgreementwithExpected
C.parapsilosis1 – 2 X LoDSite 1360
Site 2360108/108
Site 3360100%
All sites1080
C.parapsilosis3-4 X LoDSite 1360
Site 2360108/108
Site 3360100%
All sites1080
C. glabrata1-2 X LoDaSite 1351
Site 2342105/108
Site 336097.2%
All sites1053
C. glabrata3-4 X LoDSite 1360
Site 2351106/108
Site 335198.1%
All sites1062
C. albicans1-2 X LoDbSite 1351
Site 2351103/108
Site 333395.4%
All sites1035

Table 1. Summary of Reproducibility Results Across Sites, Reagents and Operators

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3-4 X LoDSite 1351107/10899.1%
Site 2360
Site 3360
All sites1071
NegativeN/ASite 1036108/108100%
Site 2036
Site 3036
All sites0108

ª Two false positive results in the P channel

b One false positive result in the P channel

  • b. Linearity/assay Reportable Range:
    Not Applicable

  • Traceability, Stability, Expected Values (controls, calibrators, or methods): C.
    The T2Candida Panel and T2Dx® Instrument require two types of controls, the internal control and the external controls. The Internal Control (IC) is introduced into each specimen during sample processing on the T2Dx® instrument; the pan-Candida primers are designed to amplify the target Candida species and the internal control DNA. The IC is designed to report on the presence of any inhibitors in the clinical specimen and on any instrument-related errors. The signal cut-off for the IC is a 66(4) (b)(4) If the IC signal is below its cutoff and if the patient specimen is negative for all Candida targets, the specimen result cannot be determined and the IC result will be flagged as "Invalid" by the software resulting in an invalid test. If any of the Candida targets is determined to be positive. the specimen will be reported as positive for that target, regardless of the performance of the IC.

The external controls are provided in a kit and include both positive and negative controls prepared in a whole blood matrix. The T2 positive external control includes two blends of Candida species which can interrogate each T2Candida detection channel. The T2Candida A/P/G positive external control is comprised of a blend of C. albicans, C. parapsilosis and C. glabrata. The T/P/K positive external control is comprised of a blend of C. tropicalis, C. parapsilosis and C. krusei. The Candida concentration in the positive external controls is at least 3-5X LoD. The T2 negative external control is a whole blood specimen free of any Candida cells.

As noted in sections 3a and 3b below, clinical studies were conducted using prospectively collected specimens and contrived specimens. During the clinical and analytical studies for the T2Candida assay, fresh whole blood external controls were used; a positive and negative control was run each day of the contrived and prospective arms of the study; positive controls alternated between the APG and the TPK controls. A summary of the quality control test results across all sites is listed in Table 2 below.

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TargetSpeciesSiteNo. TestedNo. PositiveNo. NegativeNo. Invalid
A/P/GcontrolaSite 1676700
Site268661c1
Site 3565600
Site 4494603
Site 5999702
Site 616151c0
Site 7111001
All Sites366357 (97.5%)2 (0.6%)7 (1.9%)
T/P/KControlbSite 1696702
Site2737201
Site 3585602
Site 4605802
Site 51029804
Site 6131201
Site 7141301
All Sites389376 (96.7)013 (3.3%)
NegativeControlSite 113801362
Site21402d1371
Site 31153d1093
Site 41092d1052
Site 52004d1942
Site 6290254
Site 7260242
All Sites75711 (1.4%)730 (96.4%)16 (2.1%)

Table 2. Summary of Quality Control Testing, Including Testing Performed During the Clinical (Prospective and Contrived) Testing Arms.

a A/P/G control contains: C. albicans, C. parapsilosis and C. glabrata.

b T/P/K control contains C. tropicalis, C. parapsilosis and C. krusei.

C One of three channels negative.

d One of three channels positive.

Fresh vs. Frozen Control Equivalence. Due to the limited shelf life of the fresh whole blood external controls, the positive and negative controls will be provided in a separate package as frozen whole blood external controls containing the same organism blends as is found in the fresh whole blood controls. These controls are intended to be stored at -20° C, thawed and equilibrated to room temperature prior to testing. In order to evaluate the equivalence of the frozen external controls with the fresh whole blood external controls, a study was conducted with two lots each of fresh and frozen controls using 65 samples (each, fresh and frozen) of the A/P/G positive control, 65 samples (each, fresh and frozen) of the T/P/K positive control and 65 samples (each, fresh and frozen) of the negative control. Results confirmed the equivalence of the fresh and frozen controls. Results for each of the three channels (A/T, P, K/G) are shown in Table 3 below.

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ControlLotNo testedA/TChannelPos (%)PChannelPos (%)K/GChannelPos (%)IC Pos(%)Invalid
A/P/GFresh16565 (100)65 (100)65 (100)65(100)0
A/P/GFresh26565 (100)65 (100)65 (100)65(100)0
A/P/GFrozen16565 (100)65 (100)64 (98.5)65(100)0
A/P/GFrozen26565 (100)65 (100)64 (98.5)65(100)0
T/P/KFresh16564 (98.5)65 (100)64(98.5)65(100)0
T/P/KFresh26564 (98.5)65 (100)64(98.5)65(100)0
T/P/KFrozen16565 (100)65 (100)65 (100)65(100)0
T/P/KFrozen26565 (100)64 (98.5)65 (100)65(100)0
Negativefresh16500065(100)9*
Negativefresh26500065(100)0
Negativefrozen16500065(100)3*
Negativefrozen26500065(100)3*

Table 3. Control Lots 1 and 2, Fresh vs. Frozen Equivalence

*Invalid tests were repeated and provided negative results.

External Control Reproducibility. The lot-to-lot reproducibility of the frozen external controls was further assessed by evaluating the T2 signal obtained from four production lots of the frozen controls. Ten replicates of each of the three frozen controls (A/P/G positive, T/P/K positive and negative) from each of the four lots were evaluated. The average T2 signal, %CV and % positive was evaluated for each lot. Results indicated that the four lots provided equivalent results.

Frozen Control Stability. The stability of the frozen positive and negative controls was also assessed. Three lots of each of the three controls (A/P/G positive, T/P/K positive and negative) were tested using the T2Candida Panel after 0 days, 30 days and 60 days of storage at -20° C. For each time point, the mean of the measured T2 signals from the A/T, P and K/G channels for each of the controls was expected to be statistically equivalent to the mean T2 signals measured in those channels on Day 0. At the time of clearance, all controls showed acceptable performance for at least 60 days.

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d. Detection Limit:

LoD testing was performed using two strains of each species targeted by the T2Candida Panel and performed on the T2Dx® Instrument. LoD testing consisted of an initial screening phase and a confirmatory phase. In the initial screening phase triple or double spiked samples (A/G/P or T/K) were prepared at 5 concentrations (8, 4, 2, <1 CFU/mL and negative) and stored at 2 - 8° C until testing. (The applicability of using multiple-spiked samples was evaluated in a separate study, see below). Seven replicates per spike level/Candida strain were tested to determine the putative LoD, which was the lowest concentration of Candida in which the positive detection rate met or exceeded 95%. These putative concentrations were used in the confirmatory phase to determine the exact LoD for each species. In the confirmatory phase, a total of at least 20 replicates of each of two strains per species were tested using single-organism-spiked samples. The LoD was confirmed at the putative LoD concentration if no fewer than 19 of the 20 replicates gave a positive signal for the appropriate organism (95.0% detection rate). For one strain each of two species, C. albicans and C. parapsilosis, the confirmatory testing did not validate the putative LoD determined in the initial studies. Those strains were retested at the next higher dilution, resulting in a 100% positive detection rate: this concentration was determined to be the LoD for the species. Results of the confirmatory LoD testing are shown in Table 4 below.

Strain 1Strain 2
Species# Positive/Total (%)CFU/mL# Positive/Total (%)CFU/mLFinal LoD CFU/mL
C. albicans19/20 (95)121/21 (100)22
C. tropicalis20/20 (100)121/21 (100)11
C. parapsilosis20/20 (100)220/20 (100)33
C. glabrata20/20 (100)220/20 (100)22
C. krusei19/20 (95)119/20 (95)11

Table 4. LoD Results

Invalid results: 23/845 (2.7%) False positives: 5/845 tests (0.6%)

Single Species Spike, Multi-species Spike Equivalence. e.

A comparison of the equivalence of results obtained for samples spiked with a single species of Candida vs. samples spiked with three species of Candida was performed. This study was performed to determine the applicability of testing multiple species in a single blood specimen during the analytical studies.

A single strain of each of the five Candida species was tested at concentrations of 2-3X LoD. Twenty replicates of each single spike and multi-spike sample was tested; multi-spiked samples contained the combinations of either C. albicans, C. parapsilosis, and C. glabrata (each at 2-3 X their specific LoD) or C. tropicalis, C. parapsilosis, and C. krusei (each at 2-3 X their specific LoD). The combinations

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were chosen to provide a specific result for each detection channel of the instrument.

Results from samples containing three Candida species were positive in each channel and were determined to be equivalent to the results for the same species when tested using a blood specimen spiked with only a single species.

Invalid Results: 5/281 (1.8%) Instrument failure: 4/281 (1.4%) False positive: 2/281 (0.7%)

f. Analytical Sensitivity:

Fifteen human strains of each target species were tested the T2Candida Panel and T2Dx Instrument. The identification of all isolates was confirmed by sequence analysis of the ITS2 region of the ribosomal operon. Isolates were tested in triplicate at 2-3X LoD; testing was repeated for strains which were not detected. Results of the analytical sensitivity study are shown in Table 5 below.

SpeciesNo. strains tested/no.positive (%)
C. albicans15/15 (100%)
C. tropicalis14/15 (93.3%)*
C. krusei15/15 (100%)
C. glabrata15/15 (100%)
C. parapsilosis15/15 (100%)

Table 5. Analytical Sensitivity Results

*Repeat testing of 20 replicates of the C. tropicalis isolate that was not detected gave positive results in all replicates.

False positives: 2/225 (0.9%)

Co-infection Studies: g.

A competitive inhibition study was performed to evaluate the sensitivity of the T2Candida Panel and T2Dx® Instrument to detect Candida present at a concentration of 1-2X LoD in the presence of other clinically relevant organisms that may be present in a co-infection. Three combinations of organisms were tested in whole blood samples: 1) samples containing two Candida target species, both in concentrations at 1-2X LoD; 2) samples containing a Candida species at 1-2X LoD in combination with a different Candida species at a concentration of 100 CFU/ML: 3) samples containing a Candida species at b TS/CC! in combination with members of other genera at a concentration of 100 CFU/mL. The high concentration of 100 CFU/mL was considered to be clinically relevant as two mL of blood is used in the assay resulting in an organism concentration of 200 CFU/assay.

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Thirty one pairs of different Candida species, both at a concentration of 1-2X LoD, were tested in replicates of four for a total of 124 tests. Of these, 118 tests were positive for both Candida species (95.2%).

Sixty three pairs of two Candida species were tested in replicates of four with one species spiked at 1-2X LoD and the other species spiked at 100 CFU/mL for a total of 252 tests. The Candida species spiked at 100 CFU/mL were detected in all samples. Two hundred forty four tests were positive for the Candida species spiked at 1-2X LoD (96.8%).

Fifty samples including Candida species (spiked at 1–2X LoD) in combination with representatives of other genera (Pseudomonas aeruginosa, Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus saprophyticus and Streptococcus pneumoniae, spiked at 100 CFU/mL) were tested in replicates of four for a total of 200 tests. Of these, the Candida species was detected in 189 (94.5%) tests. Results of the co-infection study are shown in Table 6 below.

Invalid Results: 24/1597 (1.5%) False Positives: 5/1597 (0.3%)

Table 6. Results of Competitive Inhibition Studies

OrganismcombinationsConcentrationNo.PairsTestedTotal No. ofTests (4ReplicatesPerOrganismCombination)No. of PositiveTests/Total No. ofTests (%)95% CI
Candidasp./Candidasp.Both at 1 - 2XLoD31124118/124 (95.2%)89.8 -97.8
1-2X LoD/100 CFU/mL63252244/252 (96.8%)93.8 -98.4
Candida sp./other genus1-2X LoD/100 CFU/mL50200189/200 (94.5%)90.4 -96.9

f. Analytical Specificity:

A cross reactivity study was performed using 80 non-target, clinically relevant or environmental organisms including 21 yeast species, nine viruses, 25 fungi and 25 species of bacteria. Isolates were initially tested in triplicate at a concentration of 100 CFU/mL for yeast, molds and bacteria, and viruses were tested at a concentration of 102 PFU/mL. Any strain which showed cross reactivity or gave an invalid result was further evaluated at lower, more clinically relevant concentrations of organisms in blood (100, 33 and 10 CFU/mL).

Cross reactivity was defined as an increase in the T2 signal above the established cutoff for the Candida detection channels when tested at clinically relevant

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concentrations. Cross reactivity required both amplification of the organism with the pan-Candida PCR primers and subsequent detection with any of the capture probes.

Forty one species tested at a concentration of 106 CFU/mL (10° PFU/mL for viruses) showed no cross reactivity and had valid IC values. These species are listed below in Table 7.

Bacteria
Acinetobacter baumanniiStaphylococcus aureus MRSA
Bacteroides fragilisStaphylococcus auricularis
Clostridium perfringensStaphylococcus epidermidis
Enterobacter cloacaeStaphylococcus haemolyticus
Klebsiella oxytocaStaphylococcus hominis
Klebsiella pneumoniaeStaphylococcus intermedius
Morganella morganiiStaphylococcus saprophyticus
Pseudomonas aeruginosaStaphylococcus warneri
Serratia marcescensStreptococcus mutans
Enterococcus faecalisStreptococcus pneumoniae
Staphylococcus aureusStreptococcus pyogenes
FungiViruses
Acremonium kilienseAdenovirus
Malassezia furfurCytomegalovirus
Malassezia pachydermatisEnterovirus
Mucor oblongiellipticusEpstein-Barr Virus
Phialophora richardsiaeHepatitis A
Rhizomucor microsporousHepatitis B
Rhizopus pusillusHerpes simplex Virus 1
Rhizopus oryzaeHerpes simplex Virus 2
Scedosporium prolificansVaricella zoster Virus

Table 7. Species Providing Valid IC Values and No Cross Reactivity

Thirty species tested at a concentration of 106 CFU/mL gave an invalid result in at least one replicate due to a low IC value but gave no positive signals in any of the Candida channels. Further testing with these strains at clinically relevant concentrations (100, 33 and 10 CFU/mL) provided negative T2Candida results with acceptable IC values and were determined to be non-cross reacting (See Table 8 below).

Five species (Candida rugosa, Candida sojae, Acinetobacter lwoffii, E. coli and E. faecalis) gave positive Candida results (and either valid or invalid IC results) in one or more replicates when tested at a concentration of 10° CFU/mL. Repeat testing at clinically relevant organism concentrations (100, 33 or 10 CFU/mL) showed no cross reactivity (Table 8 below).

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Table 8. Species Providing an Invalid IC or Positive Candida Results When Tested at 10° CFU/mL but Not When Tested at Clinically Relevant Concentrations; Not Considered to be Cross Reactive

Organisms Giving Invalid IC Results at 106 CFU/mL
Candida albidusAspergillus flavus
Candida dubliniensisAspergillus fumigatus
Candida gigantensisAspergillus niger
Candida guilliermondiiAspergillus terreus
Candida kefyrExophiala xenobiotica
Candida lunataFusarium proliferatum
Candida lusitaniaeFusarium oxysporum
Candida nivariensisFusarium solani
Candida norvegensisKluyveromyces delphensis
Candida pelliculosaPichia anomala
Candida utilisPaecilomyces variotii
Candida viswanathiiScopulariopsis brevicaulis
Cryptococcus neoformansTrichosporon asahii
Rhodotorula glutinisTrichosporon inkin
Trichosporon mucoides
Trichoderma reesei
Organisms Giving Positive Candida Results at 106 CFU/mL
Candida rugosaAcinetobacter lwoffii
Candida sojaeEscherichia coli
E. faecalis

The following species were shown to cross react when tested at any concentration: C. bracarensis, S. cerevisiae, C. metapsilosis and C. orthopsilosis (Table 9 below).

In order to determine the effect of the presence of bacteria in the specimen on the IC value in actual clinical specimens, a review of the T2 signal data for 63 prospectively analyzed specimens that were positive for bacteria (as determined by the corresponding blood culture) was performed. The T2 signals for the internal control for all specimens was greater than the cutoff value, indicating that for samples containing clinically relevant organism concentrations, the internal control would be within acceptable levels and would not result in an invalid test result.

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T2Candida Results at Various Concentrations
106 CFU/mL100 CFU/mL33 CFU/mL10 CFU/mL
OrganismA/TPK/GICA/TPK/GICA/TPK/GICA/TPK/GIC
Candida bracarensisNNPInvalidNNPValidNNPValidNNPValid
Saccharomyces cerevisiae*NNPInvalidNNPValidNNPValidNNPValid
Candida orthopsilosisNPNInvalidNPNValidNPNValidNPNValid
Candida metapsilosisNPNInvalidNPNValidNPNValidNPNValid

Table 9. Species determined to be Cross Reactive

*Five strains evaluated

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Interfering Substances g.

An interfering substances study was performed to determine and characterize the effects of potential endogenous and exogenous interfering substances on the performance of the T2Candida Panel and the T2Dx® Instrument. Interference testing was performed using a paired-difference format; the potentially interfering substance was added to a Candida-spiked sample at high concentration (to simulate worse case) and the bias relative to a Candida spiked control containing no interfering substances was determined. Substances were considered to be interfering if the T2 signal (in msec) was decreased by 30% or greater as compared to the sample containing no interferent. After testing average T2MR signal, standard deviation, %CV and % positive were evaluated for each sample.

A total of seven substances representing possible patient underlying conditions were tested at concentrations from 1X to 38X above clinical levels, with most at 3X clinical levels (Table 10).

Underlying Sourceor ConditionEndogenousInterferentReference LevelTest Concentration
LeukocytosisHuman DNA(Buffy Coat)WBC 3.5-11E7cells/mL5E7 cells/mL
IcterusBilirubin(conjugated)0-3.4 µmol/L50 mg/L
Bilirubin(unconjugated)5-21 µmol/L150 mg/L
ALT17-50 U/L (plasma)≥ 3 times the uppernormal limit of 50 U/L
AST9-48 U/L≥ 3 times the uppernormal limit of 48 U/L
HemolysisHemoglobin1-2 g/L22.4 g/L
LipemiaIntralipid0.34-3.7 mmol/L or0.065 mg/dL(triglycerides)1.3 mg/dL
HyperproteinemiaProtein (albumin)39-51 g/L40 g/L
Immunoglobulin G6-13 g/L15 g/L
Renal FailureCreatinine6-17 mg/L50 mg/L
Urea1.1-14.3 mmol/L42.9 mmol/L (2.58mg/mL)
MultipleCirculating humanDNAN/A1 µg/mL

Table 10. Endogenous Substances Evaluated to Represent Human Underlying Conditions

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Twenty four exogenous substances were tested at concentrations from 1X to 38X above clinical levels (Table 11). Potential exogenous interferents were tested in sets of three for a total of eight interferent pools. All interferents were added to healthy donor blood; Candida species were spiked into the samples at 3X LoD using inocula containing either the multi-spike combinations of C. albicans/C. parapsilosis/C. glabrata or C. tropicalis/C. parapsilosis/C. krusei and tested in triplicate. If assay interference, as measured by a decrease in T2 signal by 30% or greater, was detected with any of the interferent pools, each interferent present in the pool was prepared as an individual test to determine which substance was acting as an interferent with the assay's performance.

Results indicated interference with the signal for Candida species or with the signal for the internal control for the following substances: Feraheme, Magnevist, EDTA, Ablavar, and samples with an interferent simulating lipemia (Intralipid).

Invalid Results: 12/1647 (0.7%) False Positives : 5/1647 (0.3%)

Exogenous InterferentReference LevelTest Concentration
EDTA2 mg/mL6 mg/mL
Heparin350-1000 U/L3000 U/L
Calcium HypochloriteNA8% (80 mg/mL)
Fluconazole65.2-81.5 µmol/L245 µmol/L (75 µg/mL)
Micafungin100 mg dosage/day60 mg/L
Ferumoxytol (Feraheme)510 mg/dosage, 30 mg/mL306 mg/L
MRI Contrast Agent:Magnevist (gadopentetatedimeglumine, Gd-DTPA)0.01 mmol/kg5.4 mmol/L (6.86 mg/mL)
MRI Contrast Agent: Ablavar(gadofosveset or Vasovist)0.03 mmol/kg1.6 mmol/L (1.56 mg/mL)
Amphotericin B Trihydrate1 mg/kg/day54.5 mg/L
Amphotericin B, liposomal(Ambisome)3-5 mg/kg/day270 mg/L
Piperacillin/Pipril(Piperacillin)6g3.6 g/L
Vancomycin12.4-27.6 µmol/L69.0 µmol/L (100 µg/mL)
Imipenem/Cilastatin(Primaxin)1 g600 mg/L
Ciprofloxacin1.51-15.1 µmol/L30.2 µmol/L (10µg/mL)
Tazobactam (Tazobac)4.5 g8.1 g/L
Gentamycin sulfate10.5-20.9 µmol/L21 µmol/L (10 µg.mL)
Linezolid600 mg360 mg/L
Azithromycin (Zithromax)0.4-5.1 µmol/L15.3 µmol/L (11.5 µg/mL)
Clindamycin (Cleocin)4.0-29.7 µmol/L89.1 µmol/L (41.4 µg/mL)
Metronidazole35-234 µmol/L701 µmol/L (119.9 µg/mL)

Table 11. Exogenous Substances Evaluated

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Exogenous InterferentReference LevelTest Concentration
Caspofungin70 mg42 mg/L
Lisinopril0.25 $\mu$ mol/L0.74 $\mu$ mol/L (326.7 $\mu$ g/L)
Cytarabine6 mg/kg324 mg/L

h. Assay Cut-off:

To establish the cutoff values for the A/T, P, K/G and internal control detections, a limit of blank study was conducted using negative blood specimens from healthy (N=113) and unhealthy (N=39) patients, with two different reagent lots. The T2MR signal, in milliseconds (msec), was evaluated to establish the upper limit of T2 signal distribution on negative measurements and lower limit of T2 signal of positive internal control measurements. These limits encompassed 99% of the no target signals and 99% of the positive internal control signals, respectively. The mid-point of the interval between these upper and lower limits was 65 ms and was set as the clinical cutoff for A/T, P and K/G detection. The upper limit was 85 ms and was set as the cutoff for the internal control detection. Validation of the cutoff was completed by analysis of results obtained during the prospective clinical studies. Cutoff values are indicated in Table 12 below.

In the LoD studies, T2MR signals were typically (b)(4) Ts/CC msec for negative detections and ranged from (b)(4) TS/CCl msec to (b)(4) TS/CC| msec for positive detections.

DetectionChannelLower limit ofvalid signal (ms)Clinical cutoff(ms)
A/T2065
P2065
K/G2065
IC8585

Table 12. Assay Cutoff Values

Application of assay cutoff to patient specimens. In the event that one or more of the A/T. P. and K/G particle detection signals is below the lower limit of valid signal (20ms) for a patient specimen, that entire specimen is deemed invalid because the specific detection reactions that were below the lower limit of valid signal had an associated failure.

i. Carryover/Cross Contamination Studies

A cross contamination study was performed to determine the rate of false positivity caused by organism carryover within the T2Dx Instrument. A checkerboard study (alternating high positives and negatives) was performed using two runs on five instruments using multi-spiked samples prepared to contain 100 CFU/mL (200 CFU/assay or 'test") interspaced with negative samples. An additional study was

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performed using samples spiked with 1000 CFU/mL (2000 CFU/assay).

A possible total of 175 negative samples were run. Three of these samples were false positive (all with samples spiked at 100 CFU/mL) for a false positive rate of 1.7%.

j. Specimen Stability at 2-8° C

In order to support a labeling recommendation for storage of blood samples at 2 - 8°C prior to testing, a specimen stability study was performed. Ten replicates of whole blood specimens were spiked with each of the target Candida species at a concentration of 100 CFU/mL. The organism concentration was determined by colony count at Day 0, Day 1 and Day 3 of storage. Results indicated that the organism concentration in samples held for 1 day at 2 - 8 °C showed a change in organism concentration of -9% to +12.4%. Colony count results obtained after three days of storage showed a decrease in organism concentration of -4% to -17%. Device labeling indicates that blood specimens should be tested as soon as possible after collection and that specimens held for longer than one day at 2 - 8° C may result in a decrease of viable organisms in the specimen.

k. Lysis Tube and Reagent Stability

A stability study was performed to determine the shelf-life of the reagents and the lysis tubes at the recommended temperatures. Reagents were removed from the kits and each component was evaluated using quality control methods applied to the bulk reagents prior to kit fill. Results were compared to results obtained with recently manufactured reagents; all acceptance criteria were met indicating all reagents included in the kit were stable for at least seven months from date of manufacture. The following storage instructions will be recommended for the packaging and labeling: T2Candida Reagent Packs should be stored at 2-8°C; the T2Candida Cartridge should be stored at 15-30°C. The expiration date of each component will be indicated on the component label.

l. Shipping Stability

The T2Candida shipping containers containing Reagent Packs, the Cartridge Kit and the External Controls were tested for component, labeling and packaging damage according to the ISTA 2A drop test. Containers were dropped in several package orientations from a drop height of 38 inches. All shipping configurations passed the pre-specified acceptance criteria.

To evaluate the effects of thermal exposure, packaged components were exposed to temperatures between 24.5 and 30.4° C for 36 hours and between 4.3 and 14.2°C for 36 hours. After exposure the packaged T2Candida Panel components were functionally tested on the T2Dx® Instrument. Results were compared to results obtained by the same lot of T2Candida panel components stored at the recommended storage temperatures. All components passed the pre-specified acceptance criteria, that thermal cycle exposed T2Candida components were not statistically different

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(p>0.5) than the control components.

    1. Comparison Studies:
    • a. Method Comparison with Predicate Device: Not Applicable
    • b. Matrix Comparison: Not Applicable

3. Clinical Studies:

  • a. Clinical Sensitivity:
    Because of the low prevalence of Candida-positive blood cultures from clinical specimens (prevalence <0.5%), the sensitivity of the T2Candida Panel and T2Dx Instrument was determined using contrived samples. Contrived samples were prepared with representatives of each of the target Candida species and were tested with the T2Candida panel. Fifty unique Candida isolates of each of the five T2Candida targets were spiked into whole blood at specific concentrations for a total of 250 positive samples. In addition 50 unspiked blood specimens were included as negative samples and were tested randomly and in a blinded fashion throughout the studv.

Isolates. Isolates were obtained from (b)(4) TS/CCI

(6)(4) TSCS), a reference laboratory and a clinical laboratory. The ITS region of each isolate was sequenced to confirm its identification; for all isolates the BLAST results of the determined sequence showed > 99.2% similarity to C. albicans, C. tropicalis, C. krusei, C. glabrata or C. parapsilosis, as appropriate.

Blood specimens. Three K2EDTA tubes containing 4 mL of blood in each tube were drawn from patients for whom blood cultures were ordered at three clinical sites. Thirty-four percent of specimens were obtained from patients determined to have some level of immunocompromise. Tubes were transported to T2Biosystems within 24 hours of collection under refrigeration conditions. In the event that a blood culture (from the same patient draw as the K2EDTA tubes) was determined to be Candida positive for the patient blood specimen. the contrived specimen's T2 analytical result was declared invalid and not analyzed as part of the T2 study.

Spiking. Contrived samples were spiked with a specific concentration of Candida based on Table 13 below to represent clinically relevant organism concentrations; a majority of samples contained Candida levels near the limit of detection.

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Organism (LoD*)<1 CFU/mL1 – 10 CFU/mL11 – 30 CFU/mL31 – 100 CFU/mL
C. albicans (2)1018175
C. tropicalis (1)1018175
C. krusei (1)1018175
C. glabrata (2)1018175
C. parapsilosis (3)1018175
Number (%) of Total50 (20)90 (36)85 (34)25 (10)

Table 13. Number of Contrived Specimens/Candida Species/Titer Level

*LoD in CFU/mL

Cell bullets were prepared for each isolate and stored frozen. The concentration of organism in the cell bullets was determined by (b)(4) CCI

The

(b)(4) CCI s was used to assign an organism concentration value (b)(4) CCI was used to guide contrived sample preparation. Cell viability and cell death was evaluated by comparing cell counts obtained before and after a single freeze/thaw cycle. Results were consistent with minimal cell death after a single freeze/thaw cycle.

Within 48 hours of specimen draw, contrived samples were prepared using a randomized organism list to determine the species and strain to be used each day of preparation. Cell bullets were diluted to appropriate levels and the concentration was verified by colony count testing: three replicates, each in 4 mL of K2EDTA blood, were prepared for each organism/inoculum concentration. For each three-tube set, one tube was retained by T2 Biosystems for quality control purposes and the remaining two tubes were distributed to a testing site. Duplicate samples were shipped to assure the availability of a sample in the event one of the sample tubes was damaged during transit or otherwise malfunctioned. Only one sample was tested by the site, the untested sample was discarded.

In addition to positive spiked samples, an additional 50 un-spiked blood specimens were sent to testing sites as blinded negative samples.

Contrived samples and negative samples were distributed across four clinical sites within 24 hours of preparation and analyzed with the T2Candida Panel and T2Dx Instrument within 48 hours of receipt. Instructions for performance of contrived sample testing specified that as part of the loading procedure, refrigerated (i.e. controls and contrived) samples should be allowed to equilibrate to room temperature for ~20 minutes prior to loading. In all cases, samples were tested within five hours of equilibration to room temperature.

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Assay. Contrived samples were tested with the T2Candida Panel on a T2Dx instrument at four clinical sites per the testing protocol. For each specimen, T2Candida results for all four detection reactions (C. albicans/C. tropicalis, C. krusei/C. glabrata, C. parapsilosis and internal control) were collected yielding T2Candida sets for 300 different samples (250 spiked and 50 negative) for a total of 900 organism channel results. Positive percent agreement (PPA) across all organism concentrations was 94.0% for the A/T and P channels and 88.0% for the K/G channel. Results for the contrived samples by detection channel for all concentrations are shown in Table 14 below.

Results were also analyzed relative to Candida spike concentration (Table 15) and relative to species LoD (Table 16). PPA for samples spiked at concentrations > LoD showed 97.4 to 100.0% PPA across all detection channels.

All 50 negative samples gave negative results for all channels. A single false positive result (1/250, 0.4%) was seen in the parapsilosis channel with C. krusei.

Table 14. Contrived Specimen Performance by Detection Channel
DetectionChannelPPA95 %CINPA95%CI
A/T94/100 (94.0%)87.5-97.2200/200 (100.0%)98.1-100.0
P47/50 (94.0%)83.8-97.9249/250 (99.6%)97.8-99.9
K/G88/100 (88.0%)80.2-93.0200/200 (100.0%)98.1-100.0

Abbreviations: PPA, Positive percent agreement; NPA, Negative percent agreement; A/T, C. albicans/C. tropicalis channel; P, C. parapsilosis channel; K/G, C. krusei, C. glabrata channel

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DetectionChannel<1 CFU/mL1-10 CFU/mL11-30 CFU/mL31-100 CFU/mL
PPA95% CIPPA95% CIPPA95% CIPPA95% CI
A/T16/20 (80.0%)58.4 - 91.934/36 (94.4%)81.9 - 98.534/34 (100%)89.8 - 10010/10 (100.0%)72.2 - 100
P8/10 (80.0%)49.0 - 94.317/18 (94.4%)74.2 - 99.017/17 (100%)81.6 - 1005/5 (100%)56.6 - 100
K/G11/20 (55.0%)34.2 - 74.234/36 (94.4%)81.9 - 98.533/34 (97.1%)85.1 - 99.510/10 (100%)72.2 - 100

Table 15. Contrived Specimen PPA by Detection Channel and Relative to Candida Spike Concentration

ªAbbreviations: A/T, C. albicans/C. tropicalis channel; P, C. parapsilosis channel; K/G, C. glabrata, C. krusei channel

DetectionChannelSpeciesLoD (CFU/mL)PPA at ≥ LoDb95% CIPPA at < LoDc95% CI
A/TC. albicans277/79 (97.5%)91.2 – 99.317/21 (81.0%)60.0 - 92.3
C. tropicalis1
PC. parapsilosis332/32 (100%)89.3 - 100.015/18 (83.3%)60.8 - 94.2
K/GC. krusei175/77 (97.4%)91.0 - 99.313/23 (56.5%)36.8 - 74.4
C. glabrata2

ªAbbreviations: A/T, C. albicans/C. tropicalis channel; P, C. parapsilosis channel; K/G, C. glabrata, C. krusei channel b The calculations of PPA at > LoD included a portion of the samples spiked at 1-10 CFUmL (depending on the LoD of the species) and all samples spiked at 11-30 CFU/mL and 31-100 CFU/mL).

°The calculations of PPA at < LoD included all samples spiked at < 1 CFU/mL and a portion of the samples spiked at 1-10 CFU/mL (depending on the LoD of the species)

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b. Clinical specificity:

The specificity of the T2Candida Panel and T2Dx® Instrument was determined by a prospective comparison of the results of the T2Candida Panel with results from blood culture collected from the same draw at the same anatomical site.

Patients. A total of 1501 blood specimens were drawn from adult patients who had been referred for a diagnostic blood culture per routine standard of care. Informed consent was obtained. Forty-eight percent of specimens were obtained from patients determined to have some level of immunocompromise.

Study Sites. Specimens were collected at nine geographically diverse sites; testing was performed at seven sites.

Specimens. A standard blood culture set (aerobic and anaerobic bottle set) was obtained for each patient in accordance with standard institutional practice and blood culture system manufacturer's recommendations. In addition, three 4 mL specimens in K2EDTA vacutainers for the T2Candida Panel were obtained from the same anatomical collection site as the blood culture. The first tube drawn (Tube A) is used for the T2Candida assay and the remaining tubes were transferred to T2 Biosystems for -80 ° C storage and additional testing.

Results. Based on results from the 1501 prospective specificity of the T2Candida Panel and T2Dx® Instrument was determined to be 98.8% for the A/T channel, 99.2% for the P channel and 99.2% for the K/G channel (Table 17). A total of six blood cultures were positive for Candida species (Table 18). An additional blood culture was positive for C. parapsilosis, T2Candida results were positive in the P (C. parapsilosis) channel but the specimen was excluded from the study due to a protocol violation. A total of 63 of the 1501 prospective specimens were positive with bacteria only.

The T2Candida Panel and T2Dx® Instrument correctly detected 2/4 specimens that had corresponding blood cultures positive for C. albicans, 2/2 and 1/1 specimens that had corresponding blood cultures positive for C. parapsilosis and C. glabrata, respectively (Table 18).

Table 17. Prospective Specimen Sensitivity and Specificity by Detection Channel

DetectionChannelSensitivity95%CISpecificity95%CI
A/T2/4* (50.0%)15.0 - 85.01479/1497 (98.8%)98.1 - 99.2
P2/2 (100%)34.2 - 100.01487/1499 (99.2%)98.6 – 99.5
K/G1/1 (100%)20.6 - 100.01499/1500 (99.9)99.6 - 99.9
  • an additional specimen collected at the same time was positive for C. albicans

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SpecimenT2Candida ResultsBlood Culture Result
A/TPK/G
1PositivePositiveNegativeC. albicans and C. parapsilosis
2NegativePositiveNegativeC. parapsilosis
3NegativeNegativePositiveC. glabrata
4PositiveNegativeNegativeC. albicans
5Negative*NegativeNegativeC. albicans
6NegativeNegativeNegativeC. albicans

Table 18. T2Candida Results for Blood Cultures Positive for Candida Species.

*Repeat T2Candida results from an additional blood specimen drawn at the same time were positive in the A/T channel.

False Positives. The T2Candida Panel indicated 31 positive detections in 29 patient specimens for which Candida was not detected in corresponding blood cultures. A chart and case history review was conducted for those patients. This review revealed that one sample was obtained from a patient who had proven intra-abdominal candidiasis with no positive blood cultures. In addition, six patients were receiving anti-fungal therapy and four patients were colonized with Candida species. Repeat testing of 26 of the 29 false positive specimens using a specimen drawn at the same time as the original specimen were negative for Candida by the T2Candida assay. Three specimens were unavailable for retesting.

  • Other clinical supportive data (when a. and b. are not applicable): C. Not Applicable
    1. Clinical cut-off:

Table 19. Cut-off values for Candida and IC Channels

DetectionChannelLower limit ofValid Signal (msec)Clinical Cutoff(msec)
A/T2065
P2065
K/G2065
IC8585

5. Expected values/Reference range:

The overall incidence of Candida species as determined by the T2Candida Panel and T2Dx® Instrument in direct blood specimens in patients tested during this study was 0.3% (4/1501). All clinical specimens collected during this study were collected between August, 2013 and October 2013 and April 2014.

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M. Instrument Name:

T2Candida Panel and T2Dx® Instrument

N. System Descriptions:

    1. Modes of Operation:
      The system operates in a fully automated mode with limited user intervention. Reagent packs, samples and cartridges are loading manually but all processing and analysis steps are controlled and monitored by the system.

2. Software:

FDA has reviewed applicant's Hazard Analysis and software development processes for this line of product types:

Yes X or No ______________________________________________________________________________________________________________________________________________________________

Level of Concern: Moderate

Software Description:

The T2Dx instrument software controls the following:

  • T2Dx instrument interactions with peripheral devices and systems (e.g. printer, ● barcode reader, portable memory device, service laptop computer and LIS system)
  • T2Dx® instrument system diagnostics, including alarms and error notifications ●
  • . T2Dx® instrument graphical user interface. including touch screen prompts that guide an operator through the steps associated with loading and unloading test cartridges/patient specimens on the T2Dx® instrument and obtaining test results
  • T2Dx internal operating temperatures
  • Operating parameters (e.g. time, temperature, etc.) of various T2Dx instrument . subsystems.
  • Initiation of workflows, scheduling of specimens for processing and monitoring ● of workflow implementation
  • Determination of the result
  • Administrative functions (e.g. Require Operator ID, Positive Sample Counter, . Archive Results, Shutdown OS, and Restart Application)

This T2Dx® instrument software is designed and intended to interface with the T2Candida workflow software.

Device Hazard Analysis:

A list of potential hazards was developed by conducting a bottom up analysis of potential failure modes. Potential failure modes were identified including those which could lead

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to invalid or incorrect results. The RPN value for these potential hazards exceeded the threshold, which triggered a mitigation action. As a result, solutions were implemented to verify that risks were reduced.

Architecture Design Chart:

The T2Dx instrument software and T2Candida workflow software architecture design chart was provided along with a summary of software architecture illustrations and references to description of each illustration.

Software Requirements Specification (SRS):

The software requirements for T2Dx® instrument and the T2Candida panel were based on discussions with potential users, site visits, and a review of current, similar diagnostic systems. The Software Requirements Specifications (SRS) were developed using these findings.

Software Design Specification (SDS):

Requirements defined in the SRS document are implemented according to the design specifications described.

Traceability Analysis:

A traceability matrix which links requirements, specifications, hazards, mitigations and verification & validation testing for the software was acceptable.

Software Development Environment Description:

Software development life cycle plan and software development configuration management plan for the T2Dx® instrument software and the T2Candida workflow software was acceptable.

Verification and Validation Testing:

Based on the Software Requirements Specification ("SRS") and Software Design Specifications ("SDS"), software verification test plans were devised to verify that the software meets the requirements. Each element of the SRS was tested and found to meet the requirements. This was accomplished via a series of system, software integration, and code inspection activities:

  • Unit level code inspection performed by an independent reviewer and associated ● unit/integration level automated or manual functional testing of code
  • Module level (integrated software and hardware) functional testing ●
  • System level performance verification
  • . System level validation

Revision Level History:

A software revision history record for the T2Dx® instrument software and T2Candida

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workflow software was acceptable.

Unresolved Anomalies:

The T2Dx software release version 1.0.0.9 contains three unresolved anomalies. Impact analysis of these unresolved anomalies on device safety or effectiveness was acceptable.

EMC Testing:

The electrical safety of the T2Dx Instrument has been verified in accordance with the following standards:

Safety requirements for electrical equipment for measurement, control, and laboratory use (Safety).

  • . IEC 61010-1:2001 (Second Edition): Safety requirements for electrical equipment for measurement, control, and laboratory use - Part 1: General requirements
  • IEC 61010-2-010: 2003 (2nd Ed): 100562844BOX-004: Safety requirements for ● electrical equipment for measurement, control, and laboratory use - Part 2-010: Particular requirements for laboratory equipment for the heating of materials
  • IEC 61010- 2 - 081: 2001 (1st Edition) + A1:2003 : Safety requirements for electrical equipment for measurement, control, and laboratory use - Part 2-081: Particular requirements for automatic and semi-automatic laboratory equipment for analysis and other purposes
  • IEC 61010-2-101: 2002 (ed.1): Safety requirements for electrical equipment for . measurement, control and laboratory use - Part 2-101: Particular requirements for in vitro diagnostic (IVD) medical equipment

Electromagnetic Compatibility (EMC)

  • IEC 61326-1:2005: Electrical equipment for measurement, control and laboratory ● use, control and laboratory use - EMC requirements - Part 1: General requirements
  • IEC 61326-2-6:2005: Electrical equipment for measurement, control and ● laboratory use - EMC requirements - Part 2-6: Particular requirements - In vitro diagnostic (IVD) medical equipment
    1. Specimen Identification:

The T2Dx® instrument interfaces with a handheld digital imager scanner. The barcode reader can be used to identify:

  • the type of assay;
  • assay component lot numbers; ●
  • the specimen being analyzed; ●
  • the T2Dx® instrument operator, if the operator uses barcode identification. ●
    1. Specimen Sampling and Handling:

Blood should be collected in K2EDTA vacutainer tubes; the minimum volume for testing is 3 mL. Specimens should be tested as soon as possible after collection and should be

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held at room temperature (15 - 25°C) for no longer than 12 hours or for up to one day at 2 - 8° C. Holding specimens longer than one day at 2 - 8° C may result in a decrease of viable organisms in the specimen. Blood specimens should be at room temperature at the time of testing and should be inverted a minimum of 8-10 times to ensure sample homogeneity. Samples that are not visually homogenous should not be tested. The vacutainer tubes are uncapped and placed on the T2Candida Sample Inlet. The specimen and sample inlet are inserted into the instrument.

    1. Calibration:
      Calibration routines are performed automatically and require no user intervention
    1. Quality Control:
      Users are recommended to follow all laboratory procedures, local, state, and/or federal requirements and accrediting organizations guidelines for the testing of all external positive and negative control materials regardless of source.

The following recommendations are provided which relate to external quality control testing at least once per month:

  • A single POSITIVE (APG or TPK) control tube of either multiplex blend and a ● single NEGATIVE control tube from the T2Candida External Controls kit is run at least once every 30 days in order to verify the continuing performance of the T2Dx® instrument and the T2Candida panel reagents. Users should alternate the multiplex blend POSITIVE control tube with each OC check.
  • . A POSITIVE APG, a POSITIVE TPK control tube and a NEGATIVE control tube from the T2Candida External Controls kit should be run when either of the following events occurs
    • o A new reagent lot is received into the laboratory
    • o Significant maintenance (including software upgrades) to the T2Dx Instrument
  • . A single NEGATIVE control tube from the T2Candida External Controls kit should be run upon completion of the T2Dx® instrument decontamination procedure.

O. Other Supportive Instrument Performance Characteristics Data Not Covered In The "Performance Characteristics" Section above:

Not Applicable

P. Proposed Labeling:

The labeling is sufficient and it satisfies the requirements of 21 CFR Parts 801 and 809 and the specials controls.

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Q. Identified Risks and Required Mitigations:

Identified RisksRequired Mitigations
Incorrect identification of a pathogenic microorganism by the device can lead to improper patient managementSpecial Controls (1), (2), (3), (4), (5)
Failure to correctly interpret test resultsSpecial Control (6)
Failure to correctly operate the instrumentSpecial Controls (7) and (8)

R. Benefit/Risk Analysis:

Summary ofthe Benefit(s)The primary benefit provided by the T2Candida Panel and T2Dx® Instrument is theearlier diagnosis of candidemia and early initiation of appropriate antifungal treatment.Symptoms of candidemia may be nonspecific, and difficult to differentiate from otherinfectious causes of disease. Early diagnosis of candidemia may be associated withdecreased morbidity and mortality for some patients. Additionally, negative testingmay provide additional clinician confidence when delaying empiric therapy ordiscontinuing empiric antifungal therapy. Patients may experience fewer side effectsfrom antifungal therapy, and there may be additional benefits to antimicrobialstewardship programs
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Summary ofthe Risk(s)False positive and false negative results resulting from incorrect identification of apathogenic organism by the device, failure to correctly interpret test results, or failureto correctly operate the instrument are the primary risks associated with use of theT2Candida Panel and T2Dx® Instrument.A false positive result may result in unnecessary antifungal therapy, with associatedtoxicities and side effects, including potential allergic reaction. Additionally, patientsmay undergo unnecessary imaging studies to identify potential organ systeminvolvement or have alternative testing delayed due to a presumptive diagnosis ofcandidemia. Because established treatment guidelines also recommend indwellingcentral line removal for certain Candida infections, unnecessary line removal couldoccur as a result of a false positive result. These side effects from antifungal therapyare generally reversible, and additional laboratory testing is often orderedsimultaneously with evaluation for Candida . Unnecessary imaging increases potentialradiation exposure, but many critically ill patients may obtain these scans as part oftheir evaluation.False negative results could result in delayed diagnosis of candidemia, or delayedinitiation of empiric antifungal therapy. An incorrect identification could result ininappropriate anti-fungal therapy. As a result, the patient could experience a delay ineffective anti-fungal therapy. However, these risks can be mitigated throughappropriate labelling and do not exceed the current standard of care when used withtraditional blood culture.
Summary ofOther FactorsNone
ConclusionsDo theprobablebenefitsoutweigh theprobable risks?The anticipated probable benefits of the T2Candida Panel and T2Dx® Instrumentlikely outweigh the anticipated potential risks in light of the special controls and theapplicable general controls. The T2Candida panel is the first of its kind, and representsa potential for patient benefit through more rapid diagnosis of candidemia. Potentialrisks associated with false positive or false negative results may be mitigated by use oftraditional blood cultures, which would be necessary to recover the organism forfurther identification and susceptibility testing even without the T2Candida panel.Data obtained from additional studies with contrived specimens demonstrated highsensitivity. However, the prospective clinical study found that the sensitivity for C. albicans , the most prevalent species of Candida , is low, but given the small number ofpositive prospective samples (4), it is difficult to determine how the T2 will perform inreal-world use.

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S. Conclusion:

The information provided in this de novo submission is sufficient to classify this device into class II under regulation 21 CFR 866.3960. FDA believes that special controls, along with the applicable general controls, provide reasonable assurance of the safety and effectiveness of the device type. The device is classified under the following:

Product Code:PII, NSU
Device Type:Nucleic acid-based device for the amplification, detection andidentification of microbial pathogens directly from whole bloodspecimens.
Class:II (special controls)
Regulation:21 CFR 866.3960
  • (a) Identification. A nucleic acid-based device for the amplification, detection and identification of microbial pathogens directly from whole blood specimens is a qualitative in vitro device intended for the amplification, detection, and identification of microbial-associated nucleic acid sequences from patients with suspected bloodstream infections. This device is intended to aid in the diagnosis of bloodstream infection when used in conjunction with clinical signs and symptoms and other laboratory findings.
  • (b) Classification. Class II (special controls). A nucleic acid-based device for the amplification, detection and identification of microbial pathogens directly from whole blood specimens must comply with the following special controls:
    1. Premarket notification submissions must include detailed device description documentation, including the device components, ancillary reagents required but not provided, and a detailed explanation of the methodology, including primer/probe sequence, design, and rationale for sequence selection.
    1. Premarket notification submissions must include detailed documentation from the following analytical and clinical performance studies: Analytical sensitivity (Limit of Detection), reactivity, inclusivity, precision, reproducibility, interference, cross reactivity, carry-over, and cross contamination.
    1. Premarket notification submissions must include detailed documentation from a clinical study. The study, performed on a study population consistent with the intended use population, must compare the device performance to results obtained from well-accepted reference methods.

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    1. Premarket notification submissions must include detailed documentation for device software, including, but not limited to, software applications and hardware-based devices that incorporate software.
    1. The device labeling must include limitations regarding the need for culture confirmation of negative specimens, as appropriate.
    1. A detailed explanation of the interpretation of results and acceptance criteria must be included in the device's 21 CFR 809.10(b)(9) compliant labeling.
    1. Premarket notification submissions must include details on an end user device training program that will be offered while marketing the device, as appropriate.
    1. As part of the risk management activities performed as part of your 21 CFR 820.30 design controls, you must document an appropriate end user device training program that will be offered as part of your efforts to mitigate the risk of failure to correctly operate the instrument.

§ 866.3960 Nucleic acid-based device for the amplification, detection, and identification of microbial pathogens directly from whole blood specimens.

(a)
Identification. A nucleic acid-based device for the amplification, detection, and identification of microbial pathogens directly from whole blood specimens is a qualitative in vitro device intended for the amplification, detection, and identification of microbial-associated nucleic acid sequences from patients with suspected bloodstream infections. This device is intended to aid in the diagnosis of bloodstream infection when used in conjunction with clinical signs and symptoms and other laboratory findings.(b)
Classification. Class II (special controls). The special controls for this device are:(1) Premarket notification submissions must include detailed device description documentation, including the device components, ancillary reagents required but not provided, and a detailed explanation of the methodology, including primer/probe sequence, design, and rationale for sequence selection.
(2) Premarket notification submissions must include detailed documentation from the following analytical and clinical performance studies: Analytical sensitivity (limit of detection), reactivity, inclusivity, precision, reproducibility, interference, cross reactivity, carryover, and cross contamination.
(3) Premarket notification submissions must include detailed documentation from a clinical study. The study, performed on a study population consistent with the intended use population, must compare the device performance to results obtained from well-accepted reference methods.
(4) Premarket notification submissions must include detailed documentation for device software, including, but not limited to, software applications and hardware-based devices that incorporate software.
(5) The device labeling must include limitations regarding the need for culture confirmation of negative specimens, as appropriate.
(6) A detailed explanation of the interpretation of results and acceptance criteria must be included in the device's 21 CFR 809.10(b)(9) compliant labeling.
(7) Premarket notification submissions must include details on an end user device training program that will be offered while marketing the device, as appropriate.
(8) As part of the risk management activities performed as part of your 21 CFR 820.30 design controls, you must document an appropriate end user device training program that will be offered as part of your efforts to mitigate the risk of failure to correctly operate the instrument.