K Number
K083846
Device Name
XTAG CYSTIC FIBROSIS 39 KIT V2, (CFTR 39 KIT V2), MODEL I027C0231, I027D0266, I027E0267
Date Cleared
2009-09-01

(251 days)

Product Code
Regulation Number
866.5900
AI/MLSaMDIVD (In Vitro Diagnostic)TherapeuticDiagnosticis PCCP Authorized
Intended Use
The xTAG® Cystic Fibrosis 39 kit v2 is a device used to simultaneously detect and identify a panel of mutations and variants in the cystic fibrosis transmembrance regulator (CFTR) gene in human blood specimens. The panel includes mutations and variants currently recommended by the American College of Medical Genetics and American College of Obstetricians and Gynecologists (ACMG/ACOG), plus some of the worlds most common and North Americanprevalent mutations. The xTAG Cystic Fibrosis 39 kit v2 is a qualitative genotyping test which provides information intended to be used for carrier testing in adults of reproductive age, as an aid in newborn screening, and in confirmatory diagnostic testing in newborns and children. The kit is not indicated for use in fetal diagnostic or pre-implantation testing. This kit is also not indicated for stand-alone diagnostic purposes.
Device Description
The xTAG CFTR 39 kit v2 includes the following components: - PCR Primer Mix v2 including dNTPs designed to simultaneously produce 23 amplimers of the CFTR gene (24 in the presence of CFTR del 2, 3). - ASPE Mix A v2 including dNTPs contains primers designed to hybridize to either wild-type or mutant alleles ◆ with proprietary sequences at their 5' ends designed to specifically hybridize to complementary sequences coupled to a given bead population in Bead Mix A. - Bead Mix A v2 contains spectrally distinguishable populations of polystyrene beads internally dyed with red and . infrared fluorochromes coupled to proprietary DNA sequences designed to specifically hybridize to complementary sequences on the ASPE primers in ASPE Mix A v2. - 10X Buffer - Platinum® TFI DNA Polymerase . - Platinum® TFI Reaction Buffer . - TFI MgCl2 . - Shrimp Alkaline Phosphatase . - Exonuclease I . - Strepavidin-Phycoerythrin Conjugate . - xTAG Data Analysis Software (TDAS) CFTR .
More Information

No
The description focuses on the biochemical components and the data analysis software (TDAS) for interpreting the results of the genetic assay. There is no mention of AI or ML algorithms being used for data analysis or interpretation.

No.
The device is a qualitative genotyping test used for carrier testing, newborn screening, and diagnostic testing for mutations in the CFTR gene. It aids in diagnosis but does not directly provide therapy.

Yes

The "Intended Use / Indications for Use" section states that the device provides "information intended to be used for ... confirmatory diagnostic testing in newborns and children."

No

The device description explicitly lists multiple hardware components, including PCR Primer Mix, ASPE Mix, Bead Mix, various enzymes, and buffers, in addition to the software.

Yes, this device is an IVD (In Vitro Diagnostic).

Here's why:

  • Intended Use: The intended use explicitly states that the device is used to "simultaneously detect and identify a panel of mutations and variants in the cystic fibrosis transmembrance regulator (CFTR) gene in human blood specimens." This involves testing a sample taken from the human body (in vitro) to provide information about a medical condition (diagnostic).
  • Specimen Type: The device uses "human blood specimens," which are biological samples taken from the body.
  • Purpose: The test provides "qualitative genotyping information intended to be used for carrier testing in adults of reproductive age, as an aid in newborn screening, and in confirmatory diagnostic testing in newborns and children." These are all diagnostic or screening purposes related to a medical condition.
  • Device Description: The components listed are typical of a molecular diagnostic assay used to analyze genetic material from a biological sample.

The definition of an In Vitro Diagnostic device is a medical device that is intended for use in vitro for the examination of specimens, including blood and tissue samples, derived from the human body, solely or principally for the purpose of providing information concerning a physiological or pathological state, or a congenital abnormality, or to determine the safety and compatibility of transfusions, or to monitor therapeutic measures. This device clearly fits this definition.

N/A

Intended Use / Indications for Use

The xTAG® Cystic Fibrosis 39 kit v2 is a device used to simultaneously detect and identify a panel of mutations and variants in the cystic fibrosis transmembrance regulator (CFTR) gene in human blood specimens. The panel includes mutations and variants currently recommended by the American College of Medical Genetics and American College of Obstetricians and Gynecologists (ACMG/ACOG), plus some of the worlds most common and North Americanprevalent mutations. The xTAG Cystic Fibrosis 39 kit v2 is a qualitative genotyping test which provides information intended to be used for carrier testing in adults of reproductive age, as an aid in newborn screening, and in confirmatory diagnostic testing in newborns and children.

The kit is not indicated for use in fetal diagnostic or pre-implantation testing. This kit is also not indicated for stand-alone diagnostic purposes.

Indication(s) for use; The xTAG Cystic Fibrosis 39 kit v2 is a genotyping test indicated in adults for detecting mutations in the CFTR gene and in newborns and children as an aid in the diagnosis of suspected cystic fibrosis.

Product codes

NUA

Device Description

The xTAG CFTR 39 kit v2 includes the following components:

  • PCR Primer Mix v2 including dNTPs designed to simultaneously produce 23 amplimers of the CFTR gene (24 in the presence of CFTR del 2, 3).
  • ASPE Mix A v2 including dNTPs contains primers designed to hybridize to either wild-type or mutant alleles ◆ with proprietary sequences at their 5' ends designed to specifically hybridize to complementary sequences coupled to a given bead population in Bead Mix A.
  • Bead Mix A v2 contains spectrally distinguishable populations of polystyrene beads internally dyed with red and . infrared fluorochromes coupled to proprietary DNA sequences designed to specifically hybridize to complementary sequences on the ASPE primers in ASPE Mix A v2.
  • 10X Buffer
  • Platinum® TFI DNA Polymerase .
  • Platinum® TFI Reaction Buffer .
  • TFI MgCl2 .
  • Shrimp Alkaline Phosphatase .
  • Exonuclease I .
  • Strepavidin-Phycoerythrin Conjugate .
  • xTAG Data Analysis Software (TDAS) CFTR .

Mentions image processing

Not Found

Mentions AI, DNN, or ML

Not Found

Input Imaging Modality

Not Found

Anatomical Site

Not Found

Indicated Patient Age Range

adults of reproductive age, newborns and children.

Intended User / Care Setting

Not Found

Description of the training set, sample size, data source, and annotation protocol

Not Found

Description of the test set, sample size, data source, and annotation protocol

Accuracy of the xTAG CFTR 39 kit v2 was assessed through evaluation of samples representing all alleles (mutations and polymorphisms) probed by the assay. The majority of samples consisted of left-over, anonymized, banked whole-blood specimens. These specimens were supplemented with genomic DNAs from EBV-transformed lymphoid cell lines, and several custom-designed plasmids engineered to contain 1-2 CFTR mutations each. Archived clinical genomic DNA samples were obtained from a variety of sources.

The FDA cleared xTAG Cystic Fibrosis Kit (K043011 and K060627) was used as the comparator for all clinical specimens.

Summary of Performance Studies (study type, sample size, AUC, MRMC, standalone performance, key results)

a) Method Comparison Studies | Accuracy:
Accuracy of the xTAG CFTR 39 kit v2 was assessed through evaluation of samples representing all alleles (mutations and polymorphisms) probed by the assay. The majority of samples consisted of left-over, anonymized, banked whole-blood specimens. These specimens were supplemented with genomic DNAs from EBV-transformed lymphoid cell lines, and several custom-designed plasmids engineered to contain 1-2 CFTR mutations each. Archived clinical genomic DNA samples were obtained from a variety of sources.
The FDA cleared xTAG Cystic Fibrosis Kit (K043011 and K060627) was used as the comparator for all clinical specimens.
N for C cateluations = nolal number of interprodent samples tested = 319 clinical samples, 8 cell lines, and plasmids
Overall Accuracy Per Sample Before Reruns: 327/327 = 100.00%
Overall Accuracy Per Sample After Reruns: 327/327 = 100.00%
Table 1 demonstrates 100% accuracy compared with the reference method.

a) Precision/Reproducibility:
A multi-centre, multi-operator, multi-lot, blinded study design was used to evaluate total variability of the xTAG Cystic Fibrosis 39 kit.
The xTAG Cystic Fibrosis 39 kit v2 assay detected all 39 mutations, as well as normal (wild-type) alleles, with a precision of > 99.54% across 3 sites, between 6 operators (2 per site) and between reagent lots (a total of 3 lots, 1 lot per site). Sample 34 (Coriell genomic DNA) made a 'No Cal' after an allowable rerun at Site 3 (operator 1) whereas sample 37 (plasmid) made 3 miscalls at Site 1 between 2 operators.

Reproducibility of detection of a compound heterozygote dF508 / F508C was also characterized in this study. Of the 36 rest of ex 30 generated a dF508 HET call and 6 generated a dF508 Mu D call. Both results are accurate when taking into consideration the definition of a Mu call (i.e. only the mutant allele is detected).

Total number of calls (All Sites) Before Allowable Re-Run for Total WT Calls across all samples: 54612
Total No. Missed Calls: 0
Total No. No Calls: 0
Total No. Correct Calls: 54612
% Agreement with Comparator: 100.00
LB of 95% CI: 99.841
UB of 95% CI: 99.993

Total number of calls (All Sites) After Allowable Re-Run for Total WT Calls across all samples: 54612
Total No. Missed Calls: 0
Total No. No Calls: 0
Total No. Correct Calls: 54612
% Agreement with Comparator: 100.00
LB of 95% CI: 99.993
UB of 95% CI: 100.00

Key Metrics (Sensitivity, Specificity, PPV, NPV, etc.)

Accuracy (After allowable re-run): 100.00%
Precision (between site and between operator): 100% correct calls for most samples with N=438 calls per operator per site, with some exceptions:
Sample 34 (dF508): Op1 Site 1 (N=438, 100%), Site 2 (N=438, 100%), Site 3 Op1 (N=437, 99%), Site 3 Op2 (N=438, 100%).
Sample 37 (1898+5G>T): Op1 Site 1 (N=12, 91.67%), Op2 Site 1 (N=12, 83.33%), Site 2 (N=12, 100%), Site 3 (N=12, 100%).

Reproducibility (After allowable re-run, per allele):
% Agreement with Comparator is 100.00% for most alleles (e.g., G85E, 394delTT, R117H, etc.)
dF508: (N=468) Before Re-Run % Agreement 96.58 (LB 94.51, UB 98.03), After Re-Run % Agreement 99.57 (LB 98.46, UB 99.95).
1898+1G>A: (N=36) Before Re-Run % Agreement 97.22 (LB 85.47, UB 99.93), After Re-Run % Agreement 100.00 (LB 90.26, UB 100.00).
2307insA: (N=36) Before Re-Run % Agreement 91.67 (LB 77.53, UB 98.25), After Re-Run % Agreement 91.67 (LB 77.53, UB 98.25).
Total WT Calls across all samples: (N=54612) % Agreement 100.00 (LB 99.993, UB 100.00) after allowable re-run.

Predicate Device(s)

K043011, K060627

Reference Device(s)

Not Found

Predetermined Change Control Plan (PCCP) - All Relevant Information

Not Found

§ 866.5900 Cystic fibrosis transmembrane conductance regulator (CFTR) gene mutation detection system.

(a)
Identification. The CFTR gene mutation detection system is a device used to simultaneously detect and identify a panel of mutations and variants in the CFTR gene. It is intended as an aid in confirmatory diagnostic testing of individuals with suspected cystic fibrosis (CF), carrier identification, and newborn screening. This device is not intended for stand-alone diagnostic purposes, prenatal diagnostic, pre-implantation, or population screening.(b)
Classification. Class II (special controls). The special control is FDA's guidance document entitled “Class II Special Controls Guidance Document: CFTR Gene Mutation Detection System.” See § 866.1(e) for the availability of this guidance document.

0

K0r3846

510(K) SUMMARY

Cystic Fibrosis 39 kit v2

SEP - 1 2009

This summary of 510(k) safety and effectiveness information is being submitted in accordance with the requirement of 21 CFR 807.92.

510(k) Number: K083846

Purpose for Submission: New Device.

Measurand: CFTR (cystic Fibrosis transmembrane conductance regulator) gene from human blood specimens

Type of Test: Qualitative nucleic acid multiplex test.

Applicant:

Luminex Molecular Diagnostics Inc. 439 University Ave. Toronto, ON M5G 1Y8 Canada Tel: 416.593.4323 x374 Fax: 416.593.1001 Contact person: Gloria Lee

Proprietary and Established Names: xTAG® Cystic Fibrosis 39 kit v2

Regulatory Information:

  1. Regulation Section:
    21 CFR 866.5900, CFTR (cystic fibrosis transmembrane conductance regulator) gene mutation detection system

  2. Classification: Class 11

  3. Product Code: NUA

  4. Panel: lmmunology (82)

510(k) summary for xTAG® CFTR 39 kit v2 Luminex Molecular Diagnostics Inc.

Page 1 of 13

1

Intended Use :

The xTAG® Cystic Fibrosis 39 kit v2 is a device used to simultaneously detect and identify a panel of mutations and variants in the cystic fibrosis transmembrance regulator (CFTR) gene in human blood specimens. The panel includes mutations and variants currently recommended by the American College of Medical Genetics and American College of Obstetricians and Gynecologists (ACMG/ACOG), plus some of the worlds most common and North Americanprevalent mutations. The xTAG Cystic Fibrosis 39 kit v2 is a qualitative genotyping test which provides information intended to be used for carrier testing in adults of reproductive age, as an aid in newborn screening, and in confirmatory diagnostic testing in newborns and children.

The kit is not indicated for use in fetal diagnostic or pre-implantation testing. This kit is also not indicated for stand-alone diagnostic purposes.

ΔF508*1717-1G>A*W1282X*2307insA
ΔI507*R560T*1078delTY1092X
G542X*R553X*394delTTM1101K
G85E*G551D*Y122XS1255X
R117H*1898+1G>A*R347H3876delA
621+1G>T*2184delA*V520F3905insT
711+1G>T*2789+5G>A*A559T5/7/9T
N1303K*3120+1G>A*S549NF508C
R334W*R1162X*S549RI507V
R347P*3659delC*1898+5G>TI506V
A455E*3849+10kbC>T*2183AA>G

Mutations (asterisk denotes ACMG/ACOG panel) and 4 variants (variants italized) included in the xTAG CFTR 39 kit v2

Indication(s) for use; The xTAG Cystic Fibrosis 39 kit v2 is a genotyping test indicated in adults for detecting mutations in the CFTR gene and in newborns and children as an aid in the diagnosis of suspected cystic fibrosis.

Special conditions for use statement(s);

A455E*

The kit is not indicated for use in fetal diagnostic or pre-implantation testing. This kit is also not indicated for standalone diagnostic purposes.

Special instrument requirements:

Luminex 100 or 200 instrument

Device Description:

The xTAG CFTR 39 kit v2 includes the following components:

3849+10kbC>T*

  • PCR Primer Mix v2 including dNTPs designed to simultaneously produce 23 amplimers of the CFTR gene (24 in the presence of CFTR del 2, 3).
  • ASPE Mix A v2 including dNTPs contains primers designed to hybridize to either wild-type or mutant alleles ◆ with proprietary sequences at their 5' ends designed to specifically hybridize to complementary sequences coupled to a given bead population in Bead Mix A.
  • Bead Mix A v2 contains spectrally distinguishable populations of polystyrene beads internally dyed with red and . infrared fluorochromes coupled to proprietary DNA sequences designed to specifically hybridize to complementary sequences on the ASPE primers in ASPE Mix A v2.
  • 10X Buffer

510(k) summary for xTAG® CFTR 39 kit v2 Luminex Molecular Diagnostics Inc.

Page 2 of 13

2

  • Platinum® TFI DNA Polymerase .
  • Platinum® TFI Reaction Buffer .
  • TFI MgCl2 .
  • Shrimp Alkaline Phosphatase .
  • Exonuclease I .
  • Strepavidin-Phycoerythrin Conjugate .
  • xTAG Data Analysis Software (TDAS) CFTR .

Substantial Equivalence Information:

I. Predicate device name(s):
xTAG® Cystic Fibrosis Kit

  1. Predicate S10(k) number(s): K043011, K060627

  2. Comparison with predicate:

ParameterxTAG Cystic Fibrosis 39 kit v2xTAG Cystic Fibrosis Kit
Intended UseThe xTAG Cystic Fibrosis 39 kit v2 is a device used to
simultaneously detect and identify a panel of mutations
and variants in the cystic fibrosis transmembrane
conductance regulator (CFTR) gene in human blood
specimens. The panel includes mutations and variants
currently recommended by the American College of
Medical Genetics and American College of Obstetricians
and Gynecologists (ACMG/ACOG), plus some of the
worlds most common and North American-prevalent
mutations.The xTAG Cystic Fibrosis Kit is a device used
to simultaneously detect and identify a panel
of mutations and variants in the cystic fibrosis
transmembrane conductance regulator (CFTR)
gene in human blood specimens. The panel
includes mutations and variants currently
recommended by the American College of
Medical Genetics and American College of
Obstetricians
and
Gynecologists
(ACMG/ACOG), plus some of the worlds
most common and North American-prevalent
mutations.
Indications
for UseThe xTAG Cystic Fibrosis 39 kit v2 is a qualitative
genotyping test which provides information intended to
be used for carrier testing in adults of reproductive age,
as an aid in newborn screening, and in confirmatory
diagnostic testing in newborns and children.The xTAG Cystic Fibrosis Kit is a qualitative
genotyping test which provides information
intended to be used for carrier testing in adults
of reproductive age, as an aid in newborn
screening, and in confirmatory diagnostic
testing in newborns and children.
Contra-
IndicationsThe kit is not indicated for use in fetal diagnostic or pre-
implantation testing. This kit is also not indicated for
stand-alone diagnostic purposes.The kit is not indicated for use in fetal
diagnostic or pre-implantation testing.
This
kit is also not indicated for stand-alone
diagnostic purposes.
Type of TestMultiplex PCR followed by multiplex allele specific
primer extension for genotyping, hybridized to multiplex
fluorescent microparticles, detected by flow cytometryMultiplex PCR followed by multiplex allele
specific primer extension for genotyping,
hybridized to multiplex fluorescent
microparticles, detected by flow cytometry.
Product
DescriptionTests for 39 mutations and 4 variants in the CFTR gene
(23 of which are recommended by ACMG/ ACOG). The
mutations and variants are the same as those tested for
by the predicate deviceTests for 39 mutations and 4 variants in the
CFTR gene (23 of which are recommended by
ACMG/ ACOG).

510(k) summary for xTAG® CFTR 39 kit v2
Luminex Molecular Diagnostics Inc.

Page 3 of 13

3

| Specimen

TypePeripheral human whole blood.Peripheral human whole blood.
Instrument
SystemLuminex 100 or 200 ISLuminex 100 or 200 IS
SoftwareTDAS CFTR contains 1 template to detect for
mutations. Software masking function where user can
chose to display results for only the ACMG / ACOG
23 mutations or the full panel of mutations.TDAS CF-I contains 1 template to detect for 39
mutations and 4 variants.
Mutations
DetectedΔF5081717-1G>AW1282X2307insAΔF5081717-1G>AW1282X2307insA
ΔI507R560T1078delTY1092XΔI507R560T1078delTY1092X
G542XR553X394delTTM1101KG542XR553X394delTTM1101K
G85EG551DY122XS1255XG85EG551DY122XS1255X
R117H1898+1G>AR347H3876delAR117H1898+1G>AR347H3876delA
621+1G>T2184delAV520F3905insT621+1G>T2184delAV520F3905insT
711+1G>T2789+5G>AA559T5/7/9T711+1G>T2789+5G>AA559T5/7/9T
N1303K3120+1G>AS549NF508CN1303K3120+1G>AS549NF508C
R334WR1162XS549RI507VR334WR1162XS549RI507V
R347P3659delC1898+5G>TI506VR347P3659delC1898+5G>TI506V
A455E3849+10kbC>T2183AA>GA455E3849+10kbC>T2183AA>G

Standard/Guidance Document Referenced (if applicable):

  • American College of Medical Genetics (ACMG) / American College of Obstetricians and Gynecologists Technical Standards and Guidelines for CFTR Mutation Testing and Standards and Guidelines for Clinical Genetic Laboratories
  • Cystic Fibrosis Foundation / Center for Disease Control Recommendations on Newborn Screening for CF
  • FDA Class II Special Controls Guidance: Quality Control Material for Cystic Fibrosis Nucleic Acid Assays (Jan 2007)
  • FDA Class II Special Controls Guidance: CFTR Gene Mutation Detection Systems (Oct 2005)
  • CDRH Draft Guidance on Multiplex Tests for Heritable DNA Markers, Mutations and Expression Patterns (Feb 2003) CDRH Draft Guidance on Statistical Guidance on Reporting Results from Studies Evaluating Diagnostic Tests (Mar 2003)

CDRH Guidance for the Content of Pre-Market Submission for Software Contained in Medical Devices (May 1998)

  • CDRH Guidance on General Principles of Software Validation (Jan 2002)
  • CDRH Guidance on Format for Traditional and Abbreviated 510ks (Aug 2005)

MM01-A2: Molecular Diagnostic Methods for Genetic Diseases

  • MM13-PE: Collection, Transport, Preparation, and Storage of Specimens for Molecular Methods
  • MM17-A: Verification and Validation of Multiplex Nucleic Acid Assays
  • EP05-A2: Evaluation of Precision Performance of Clinical Chemistry Devices

EP07-A2E: Interference Testing in Clinical Chemistry

  • EP12-A: User Protocol for Evaluation of Qualitative Test Performance
  • EP17-A: Protocols for Determining Limits of Detection and Limits of Quantitation

Test Principle:

The xTAG CFTR 39 kit v2 incorporates multiplex Polymerase Chain Reaction (PCR) and multiplex Allele Specific Primer Extension (ASPE) with LMD's proprietary Universal Tag sorting system on the Lumines " 100 or 200 xMAP" platorm.

The amplimer sizes range from 179 bp to 465 bp. A multiplex PCR reaction is carried out under optimized conditions. Each sample then undergoes a multiplex allele specific primer extension where an aliquot of the PCR product is run through ASPE A reaction. The ASPE step allows for detection of each allele (wild-type or mutan) of a

510(k) summary for xTAG® CFTR 39 kit v2 Lumines Molecular Diagnostics Inc.

Page 4 of 13

4

given locus using an allele-specific probe (ASP) which contains a unique DNA sequence (tag) at its 5' end. Each bi-allelic locus has two ASPs and each tri-allelic loci has 3 ASPs included in the ASPE Mix. For each ASP, the 3 end of the primer is a perfect match for its allele, but will have a 3' mismatch on any other allele. Both these ASPs however are tagged with a common tag at their 5' cnd. The DNA polymerase will only extend the is a perfect match on the 3' end, so that the primer is only extended if its target allele is present in the sample. Biotin-dCTP is incorporated into the extending chain if extension occurs.

For the hybridization reaction product is added directly to microwells containing aliquots of the Bead Mix A v2. Each coupled bead is spectrally distinguishable from the other coupled beads in a given bead mix. A fluorescent reporter molecule (streptaviding) is bound to the biotin on the extended primers. Each agged primer hybridizes only to its unique anti-ag complement; therefore, each colored bead represents a specific allele, through the bead/anti-lag/tagged primer association. The beads are then analyzed by the Luminex The Lumines instrument contains two lasers: one identifies the color-coded bead, and the other identifies the presence of extended allele specific primer through the phycoerythrin reporter. Thus, the genotype of that locus is identified by the presence of phycoerythrin signal attached to one or both ASPs.

For each sample analyzed by the xTAG Cystic Fibrosis 39 kit v2, an output file containing MFI signals from the Luminex instrument is generated. The proprietary software component of this output data file to provide a final qualitative genotype for the sample. The user must select between 2 options for the final output prior to running the assay:

Option 1: Full Panel (39 mutations/deletions + 4 variants). Option 2: ACMG/ACOG panel (23 mutations and deletions).

Performance Characteristics (if/when applicable):

Clinical Performance Characteristics:

a) Method Comparison Studies | Accuracy:

Accuracy of the xTAG CFTR 39 kit v2 was assessed through evaluation of samples representing all alleles (mutations and polymorphisms) probed by the assay. The majority of samples consisted of left-over, anonymized, banked whole-blood specimens. These specimens were supplemented with genomic DNAs from EBV-transformed lymphoid cell lines, and several custom-designed plasmids engineered to contain 1-2 CFTR mutations each. Archived clinical genomic DNA samples were obtained from a variety of sources.

The FDA cleared xTAG Cystic Fibrosis Kit (K043011 and K060627) was used as the comparator for all clinical specimens.

510(k) summary for xTAG® CFTR 39 kit v2 Luminex Molecular Diagnostics Inc.

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Page 5 of 13

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5

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TR 39
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ర్లు ప్రసిద్ధి ప్రసిద్ధి ప్రాథమిక ప్రాథమిక ప్రాథమిక ప్రాథమిక ప్రాథమిక ప్రాథమిక ప్రాథమిక ప్రాథమిక ప్రాథమిక ప్రాథమిక ప్రాథమిక ఆరోగ్య కేంద్రం, ప్రాథమిక ఆరోగ్య కేంద్రం, ప్రాథమిక
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    1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 - 1999 -
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    ישורים יום יותר | 12.00
    ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺎ | 100 000
    新闻网 | מחמש מ
    的一个 | ្រី | 100.00
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    100 80 | 人 最新 | 00
    ម្រាប់ប្រជាជាបា
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    0 0 4 1 | 1100000
    2017-09-09 11:40:00 | 100 ตุลา อ
    100 000
    ,在线 | 100.00 -
    לייני מיני מיני או | 100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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    ransar ke | 100.00
    2017 | ้า - 10 - 100.00 - | 180:00
    ်ရေးနှင့် မြို့နယ်ရှိ ရွာများ | |
    | | Total no al Total no al Tre
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    ﻟﻠﻌﺐ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ ﺍﻟﻤﺴﺘﻮﻯ | មួយប្រទេស ស្រ | 200000 - 8- 0 - 0 - 0 - 2 - | 的一个 | 1500 Co | ﻟﻠﻘﻀﺎﺀ ﺍﻟﻤﺴﺘﻘﻠﺔ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤ | 新闻网 昨天21: | ﺍﻟﻤﺴﺘﻘﻠﺔ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘﺤﺪﺓ ﺍﻟﻤﺘ | 100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 | ,一 | Comment
    1990 - "S | 的一个 | 100.00 - 100.00 11 | ,都 | 12 | יים מיני מ | 部指數 | - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - 1 - | la volta | ം കോലിക്കും. അവലംബം | 的一个人 | ando a v | |
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    | | Total no. af | 100.00 12 15.81 | 1581 | 90.51 - | :15.81 - 1 | 54 07 - 54 07 | 2017 - 29:24 PM | 1329 24 | 29:24 29:24 29:24 | 중앙 54.07 - 3 | | 29.24 | 一66:37 10: | 97.87 - | 15.81. 81 | | | | 47.82 | 100.00 100.00 73.54 2017 100.00 | 0 0 1 2 0 0 100.00 100.00 69.04 100.00 | | | |
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    | | | G85E # | 94 del T | R17H # | Y12Z | 521+1G>T | 11+1G>T | 078del | R334W # | 2347 Pmut | 347 Hmu | A455E # | 1507 mut A | dF508mut # | V520 | 717-1G>A | G542X # | SSAAN | S549R | G551D # | 853X # | A559. | 25607 # | |
    | | | | Exon 3 | | | Exon 4 | Exon 5 | | | | Exon 7 | EXON 9 | | | Exon 10 | | | | | | | | EXON 11 | |
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    | | | 890 • 1 G > A | 898+5G> | 2183AA>C | 184 del A | 2307 insk | 789+5G>A | 3120+1G>/ | 1092X-C> | 1092X-C> | M1101K | R1162X # | 26599910 | | 849+10kb | S1255X20 | 3876dell | | 3905insT W1203K # | | 606V-var tg | 06V-varia | 607V-variar | 508C-varian |
    | | | | Exon 12 | | | Exon 13 | EXON 14 | Exon 16 | | | Exon 17 | | | Exon 19 | NTRON 19 | | | | EXON 2 | | EXON TO | | | |

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510(k) summary for xTAG® CFTR 39 kit v2
Luminex Molecular Diagnostics Inc.

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Table I (continued). Summary of Accuracy Study Results for the xTAG CFTR 39 kit v2

  • 1 - 1

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510(k) summary for xTAG® CFTR 39 kit v2
Luminex Molecular Diagnostics Inc.

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Page 7 of 13

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| Basis for Overall
Exon or Intron Accuracy
Calculation | Number of
Independent
Clinical Samples
Tested | Number of
Cell Lines
Tested | Number of
Plasmids
Tested | Number of
Reruns | Overall Accuracy
Per Sample
Before
Reruns | LB of 95% CI
(before
reruns) | UB of 95% CI
(before
reruns) | Overall Accuracy
Per Sample
After
Reruns | LB of 95% CI
(after
reruns) | UB of 95% CI
(after
reruns) |
|-------------------------------------------------------------|--------------------------------------------------------|-----------------------------------|---------------------------------|---------------------|----------------------------------------------------|------------------------------------|------------------------------------|---------------------------------------------------|-----------------------------------|-----------------------------------|
| Overall accuracy
per sample.
all exons | 319 | 8 | not used in
calculation | 0 | $327/327 =100.00$ | 98.88% | 100.00% | $327/327 =100.00$ | 98.88% | 100.00% |

  • It is critical to include all relevant independent variables in the model.
  • Omitted variable bias occurs when a relevant independent variable is omitted from the model.
  • The error term includes the effects of all factors, known and unknown, that determine the value of the dependent variable, other than the independent variables included in the model.
  • Total Sum of Squares (SST) = Explained Sum of Squares (SSE) + Sum of Squared Errors (SSR)
  • R2 = SSE/SST = 1 - SSR/SST
  • Adjusted R2 always less than or equal to R2
  • Multicollinearity exists when two or more independent variables are highly correlated.
  • N for C cateluations = nolal number of interprodent samples tested
    1 U = Upper Bound, LB = Lower Bound Cl = Confiente interval. Cloper-Pearson Cl calculator provided by Jo

able 1 demonstrates 100% accuracy compared with the reference meth

Analytical Performance Characteristics
a) Precision/Reproducibility:

PRECISION REPRODUCIBILITY

multi-centre, multi-operator, multi-lot, blinded study design was used to evaluate total variability of the xTAG Cystic Fibrosis 39 kit

The renocitive in anytol (o 11 has 10 carea in Chicfich Marial Concertal Concercial Concercial Concercuit Concercuit Concercuitorial concerner commender commender commendo po

510(k) summary for xTAG® CFTR 39 l
Luminex Molecular Diagnostics Inc.

Page 8 of 13

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Table 2, Reproducibility for xTAG Cystic Fibrosis 39 kit v2 (between site and between operator)

Operator - to - Operator
Site 1Site 2Site 3
SampleGenotypeOp 1
NOp 1
% corrOp2
NOp2
% corrOp1
NOp1
% corrOp2
NOp2
% corrOp1
NOp1
% corrOp2
NOp2
% corr
1711+1G>TdF508438100438100438100438100438100438100
21717-1G>A438100438100438100438100438100438100
3G542XR117H438100438100438100438100438100438100
4A455E438100438100438100438100438100438100
53659delC438100438100438100438100438100438100
6R1162XdF508438100438100438100438100438100438100
73849+10kbC>T438100438100438100438100438100438100
8W1282X438100438100438100438100438100438100
91078delTdF508438100438100438100438100438100438100
10A559T438100438100438100438100438100438100
11S549N438100438100438100438100438100438100
12G551DR347P438100438100438100438100438100438100
133905insT438100438100438100438100438100438100
14R560TdF508438100438100438100438100438100438100
15394delTT438100438100438100438100438100438100
16R553X438100438100438100438100438100438100
172184delA438100438100438100438100438100438100
181898+1G>AdF508438100438100438100438100438100438100
19Y1092X-C>AdF508438100438100438100438100438100438100
202183AA>G438100438100438100438100438100438100
21V520F3120+1G>A438100438100438100438100438100438100

510(k) summary for xTAG® CFTR 39 kit v2 Luminex Molecular Diagnostics Inc.

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SampleGenotypeSite 1Site 2Site 3
Op 1
NOp 1
% corrOp2
NOp2
% corrOp1
NOp1
% corrOp2
NOp2
% corrOp1
NOp1
% corrOp2
NOp2
% corr
22R334W438100438100438100438100438100438100
232789+5G>A438100438100438100438100438100438100
24612+1 G>A438100438100438100438100438100438100
25d1507438100438100438100438100438100438100
26dF508 (+
F508C variant)439*100442**100438***100438***100439*100438***100
27G85E438100438100438100438100438100438100
28N1303K438100438100438100438100438100438100
29M1101K438100438100438100438100438100438100
30Y122X438100438100438100438100438100438100
31R347H438100438100438100438100438100438100
323876delA438100438100438100438100438100438100
33S549R438100438100438100438100438100438100
34dF50843810043810043810043810043799438100
35dF508
(+1506V variant)181001810018100181001810018100
36V520F610061006100610061006100
371898+5G>T1291.671283.3312100121001210012100
382307insA121001210012100121001210012100
393791delC610061006100610061006100
40Y1092X-C>G610061006100610061006100
41S1255X (ex.19)121001210012100121001210012100
42S1255X (ex.20)

Tuble 2 (continued). Reproducibility for xTAG Cystic Fibrosis 39 kit v2 (between site and between operator)

  • Site 1 = Hartford Hospital; Connecticut. USA; Site 2 = Luminer Molecular Diagnostics, Toronto, Canada; Site 3 = Hospital for Sick Children, Toronto, Canada.

† Op = operator (1 or 2)

** N, number of calls

+, % corr, percent correct

t, % correct correct

  • Total Number of calls 438 + 1 = 439, because TDAS mude one dF508 Mu D call (F508C varian was unmaked)

Total Number of calls 438 + 4 = 442, because TDAS made 4 dF508 Mu D calls ( F508C variant was unmasked)

Total Number of calls = 438, because TDAS made all dF508 HET calls (F508C variant was masked)

Tatle 2 shows that the xTAG Cystic Fibrosis 39 kit v2 assuy detected all 39 mutations, as well as normal (wild-type) alleles, with a precision of > 99,54% across 3 sites, between 6 operators (2 per site) and between reagent lots (a total of 3 lots, 1 lot per site). Sample 34 (Coriell genomic DNA) made a 'No Cal' after an allowable rerun at Site 3 (operator 1) whereas sample 37 (plasmid) made 3 miscalls at Site 1 between 2 operators.

Repoducibility of detection of a compound heterozygote dF508 / F508C was also characterized in this study. Of the 36 rest of ex 30 generated a dF508 HET call and 6 generated a dF508 Mu D call. Both results are accurate when taking into consideration the definition of a Mu call (i.e. only the mutant allele is detected).

S10(k) summary for xTAG® CFTR 39 kit v2 Luminex Molecular Diagnostics Inc.

Page 10 of 13

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Table 3 Reproducibility of the xTAG Cystic Fibrosis 39 kit v2 (per allele) ;

・・・

Over All 3 Sites
Before Allowable Re-RunAfter Allowable Re-Run
PanelGenotypeTotal # calls
(All Sites)Total No.
Missed CallsTotal No.
No CallsTotal No.
Correct Calls% Agreement
with
ComparatorLB of
95%
CI *UB of
95%
CI *Total No.
Missed CallsTotal No.
No CallsTotal No.
Correct Calls% Agreement
with
ComparatorLB of
95%
CI *UB of
95%
CI *
AG85E360036100.0090.26100.000036100.0090.26100.00
A394delTT360036100.0090.26100.000036100.0090.26100.00
AR117H360036100.0090.26100.000036100.0090.26100.00
AY122X360036100.0090.26100.000036100.0090.26100.00
A621+1G>T360036100.0090.26100.000036100.0090.26100.00
A711+1G>T360036100.0090.26100.000036100.0090.26100.00
A1078delT360036100.0090.26100.000036100.0090.26100.00
AR334W360036100.0090.26100.000036100.0090.26100.00
AR347P360036100.0090.26100.000036100.0090.26100.00
AR347H360036100.0090.26100.000036100.0090.26100.00
AA455E360036100.0090.26100.000036100.0090.26100.00
AdI507360036100.0090.26100.000036100.0090.26100.00
AdF50846801645296.5894.5198.030246699.5798.4699.95
AV520F720072100.0095.01100.000072100.0095.01100.00
A1717-1G>A360036100.0090.26100.000036100.0090.26100.00
AG542X360036100.0090.26100.000036100.0090.26100.00
AS549N360036100.0090.26100.000036100.0090.26100.00
AS549R360036100.0090.26100.000036100.0090.26100.00
AG551D360036100.0090.26100.000036100.0090.26100.00
AR553X360036100.0090.26100.000036100.0090.26100.00
AA559T360036100.0090.26100.000036100.0090.26100.00
AR560T360036100.0090.26100.000036100.0090.26100.00
A1898+1G>A36013597.2285.4799.930036100.0090.26100.00
A1898+5G>T360036100.0090.26100.000036100.0090.26100.00
A2183AA>G360036100.0090.26100.000036100.0090.26100.00
A2184delA360036100.0090.26100.000036100.0090.26100.00
A2307insA36033391.6777.5398.25303391.6777.5398.25

510(k) summary for xTAG® CFTR 39 kit v2
Luminex Molecular Diagnostics Inc.

Page 11 of 13

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A2789+5G>A360036100.0090.26100.000036100.0090.26100.00
A3120+1G>A360036100.0090.26100.000036100.0090.26100.00
AY1092X-C>G360036100.0090.26100.000036100.0090.26100.00
AY1092X-C>A360036100.0090.26100.000036100.0090.26100.00
AM1101K360036100.0090.26100.000036100.0090.26100.00
AR1162X360036100.0090.26100.000036100.0090.26100.00
A3659delC360036100.0090.26100.000036100.0090.26100.00
AS1255X(19)360036100.0090.26100.000036100.0090.26100.00
AS1255X(20)360036100.0090.26100.000036100.0090.26100.00
A3849+10kb360036100.0090.26100.000036100.0090.26100.00
A3876delA360036100.0090.26100.000036100.0090.26100.00
A3905insT360036100.0090.26100.000036100.0090.26100.00
AW1282X720072100.0073.54100.000072100.0073.54100.00
AN1303K360036100.0090.26100.000036100.0090.26100.00
ATotal WT Calls
across all samples546120054612100.0099.84199.9930054612100.0099.993100.00

JB = Upper Bound, LB = Lower Bound, Cl = Confidence Interval. Exact calculation (Clopper & Pearson (1934) Biometrika 26, 404-143.) Excel Macro fro http://statpages.org/confing.htm

The TC C Cyst Fibrois 3 V ir vasar ( vild-type liles of to ssayd with repodcility (atra lows roms of 0.7%.
(fo alle 230%, 9.5% dele drobe in erminine alles brune, mines all a after allowable re-runs

Traceability, Stability, Expected Values (controls, calibrators, or method N/A

o Decembra ara e of anya o mana in tota e a manual a 10 aliento anaraman a 30, an. 2. 2. a.
Sami C. 24 and or manimal in Armanian 200 and 2004 and 2001 and 2000 and 2000 and

Inalytical Specificity | Interfering Sub stance

610(k) summary for xTAG® CFTR 39 kit
Luminex Molecular Diagnostics Inc.

Page 12 of 13

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A hinteries sur was online the dieser of new in the sepect o to team in who thou amber (200 w/m.
Immering 20 w/n. birtered minerer wer sersein in o opervling operial on bindi

e) Stability:
The expiration date for xTAG CFTR 39 kit v2 will be based on real-time stability testin

f) Assay Cut-off
N/A

.

510(k) summary for xTAG® CFTR 39 I
Luminex Molecular Diagnostics Inc.

xTAG® CFTR 39 Kit
Summary for
Luminex Molecular Diagnostics Inc.

13

Image /page/13/Picture/0 description: The image shows the logo for the U.S. Department of Health & Human Services. The logo consists of a circular seal with the text "DEPARTMENT OF HEALTH & HUMAN SERVICES • USA" arranged around the perimeter. Inside the circle is a stylized symbol that resembles three overlapping human figures or abstract shapes, creating a sense of unity and connection.

DEPARTMENT OF HEALTH & HUMAN SERVICES

Public Health Service

Food and Drug Administration 10903 New Hampshire Avenue Document Mail Center - WO66-G609 Silver Spring, MD 20993-0002

Luminex Molecular Diagnostics, Inc. c/o Gloria Lee 439 University Avenue, Suite 2000 Toronto. Ontario Canada M5G 1 Y8

SEP - 1 2009

Re: K083846

Trade/Device Name: xTAGTM Cystic Fibrosis 39 Kit v2

Regulation Number: 21 CFR 866.5900

Regulation name: CFTR (cystic fibrosis transmembrane conductance regulator) gene mutation detection system

Regulatory Class: Class II Product Code: NUA Dated: August 24, 2009 Received: August 25, 2009

Dear Ms. Lee:

We have reviewed your Section 510(k) premarket notification of intent to market the device referenced above and have determined the device is substantially equivalent (for the indications for use stated in the enclosure) to legally marketed predicate devices marketed in interstate commerce prior to May 28, 1976, the enactment date of the Medical Device Amendments, or to devices that have been reclassified in accordance with the provisions of the Federal Food, Drug, and Cosmetic Act (Act) that do not require approval of a premarket approval application (PMA). You may, therefore, market the device, subject to the general controls provisions of the Act. The general controls provisions of the Act include requirements for annual registration, listing of devices, good manufacturing practice, labeling, and prohibitions against misbranding and adulteration.

If your device is classified (see above) into either class II (Special Controls) or class III (PMA), it may be subject to such additional controls. Existing major regulations affecting your device can be found in Title 21, Code of Federal Regulations (CFR), Parts 800 to 895. In addition, FDA may publish further announcements concerning your device in the Federal Register.

Please be advised that FDA's issuance of a substantial equivalence determination does not mean that FDA has made a determination that your device complies with other requirements of the Act or any Federal statutes and regulations administered by other Federal agencies. You must

14

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comply with all the Act's requirements, including, but not limited to: registration and listing (21 CFR Part 807); labeling (21 CFR Parts 801 and 809); medical device reporting (reporting of medical device-related adverse events) (21 CFR 803); and good manufacturing practice requirements as set forth in the quality systems (QS) regulation (21 CFR Part 820). This letter will allow you to begin marketing your device as described in your Section 510(k) premarket notification. The FDA finding of substantial equivalence of your device to a legally marketed predicate device results in a classification for your device and thus, permits your device to proceed to the market.

If you desire specific advice for your device on our labeling regulation (21 CFR Parts 801 and 809), please contact the Office of In Vitro Diagnostic Device Evaluation and Safety at (301) 796-5450. Also, please note the regulation entitled, "Misbranding by reference to premarket notification" (21 CFR Part 807.97). For questions regarding the reporting of adverse events under the MDR regulation (21 CFR Part 803), please go to http://www.fda.gov/MedicalDevices/Safety/ReportaProblem/default.htm for the CDRH's Office of Surveillance and Biometrics/Division of Postmarket Surveillance.

You may obtain other general information on your responsibilities under the Act from the Division of Small Manufacturers, International and Consumer Assistance at its toll-free number (800) 638-2041 or (301) 796-7100 or at its Internet address http://www.fda.gov/cdrh/industry/support/index.html.

Sincerely vours,

Reena Philip

10 Y

Maria M. Chan, Ph.D. Director

Division of Immunology and Hematology Devices Office of In Vitro Diagnostic Device Evaluation and Safety Center for Devices and Radiological Health

Enclosure

15

Indications for Use

510(k) Number: K083846

xTAG® Cystic Fibrosis 39 kit v2 Device Name:

Indications For Use:

The xTAG® Cystic Fibrosis 39 kit v2 is a device used to simultaneously detect and identify a panel of mutations and variants in the cystic fibrosis transmembrane conductance regulator (CFTR) gene in human blood specimens. The panel includes mutations and variants currently recommended by the American College of Medical Genetics and American College of Obstetricians and Gynecologists (ACMG/ACOG) plus some of the world's most common and North American prevalent mutations. The xTAG® Cystic Fibrosis 39 kit v2 is a qualitative genotyping test which provides information intended to be used for carrier testing in adults of reproductive age, as an aid in newborn screening, and in confirmatory diagnostic testing in newborns and children.

The kit is not indicated for use in fetal diagnostic or pre-implantation testing. This kit is also not indicated for stand-alone diagnostic purposes.

X Prescription Use (Part 21 CFR 801 Subpart D)

AND/OR

Over-The-Counter Use (21 CFR 807 Subpart C)

(PLEASE DO NOT WRITE BELOW THIS LINE-CONTINUE ON ANOTHER PAGE IF NEEDED)

Concurrence of CDRH, Office of In Vitro Diagnostic Devices (OIVD)

Alewa Philip

Division Sign-Off

Office of In Vitro Diagnostic Device Evaluation and Safety

510(k) K083846

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